>input_sequence_83197
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--------------------------------------------------------------------ATGGCCACCGTG
ATGTTGTCCTGTGACGCTGCTCCAAAAGGTTAAAGATCCTTTCTTTCCTATTTTATATATACCTGATATTTTCCTTGCAG
CTATGCTTGTA--GCTGATAGCACGCATCAACAATGACCGACGAATGAACTCATATTGTATTTAACATGCTAATTCATTT
AATATATATTTTTAGAATCATGCCATGGGCTTGAAGATGGATGCGACGAACCGAAGTGCAAGGAATATTGTGTGCTCACT
TGTTACACCAAGGGATCTCATTGT---AGGGCTGAAGATTGTTGTTGTTTGATTGCTGCCAAGCCCATGGTGGACGTGCT
CCGTCGTCATGATTGA----------------------------------------------------------------
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>chr2A_1_TraesCS2A01G588800
CTCCCTCTTCTTCTTGCTTGTCCTTCCCCCAAGACAGGAAATGTATTCCCGCTCTGGTCCTTGGCTGCCATCACTCCTGA
GGGGCGGGAATCCCTCTAGATTGGACCTCTCTCCGTTTTCTTCTTTGCTTCGCACTCTTATTTTCTGGCCGAACAACGTT
TTTTAAATATCCGGAGATCCATAACTCTGATCGGGCTGAAATTTTAACACAAAATTTTCCTGATATAAGCTTCCTTGCGG
CCGAACGACACCTCCAACACGAATTTTGACACGACTTTTCGACTCATAGCTGGAGTACTTGACTAGATATAGGGCAGATA
GAACAGACGCGCCTTATAGCGTGAGTCAATTTATTCCATTTTTTGGCGCATCCAGTCTACCTATCCAATATCCAGTCAAG
ATCTGAACACTTGTCGCTTGAGAAAAGATCTGAGACCGGTTTTTTTCTTTCTGGATTGGATATTTTTTTTATGTGATAGA
TATTTTGATCTTGACTGGATATTGGAAAGATAGACAAGACGCACCGGAAAAGCGAACTAATCAATGCACGCTATAAACTC
AGTAAGGCGATAAGTATGCAGGTCCACTGAATGTATGCAGAAATCAATCTATTCACTCCAAGAGAAA--CTTTTTTATGT
GACAGGCCTTCAAAT-TTAGCTGCATATTGGATAGATATACCGGCGC---CAAAAAAGGAAACAAATTAATTCACACA-A
TAAATGCAGTGAGACGATAAGTATGCACGTCTATTCGAGG-ATATGCACTAATCAATCTATTAATTCCATCCCAAAATTA
GGATGGTATTTAAATACCACAATTAATAAAACTCAAGATCAATTTGCCTGCTCGGCCCTATATAAATGATAGCAAGCTGA
GTTGCTCGTCAACACATT--------------AAACGATAGAAAGAAGAGAGGACATCATTAC------ATAGCTAGCAT
TGTATCTTGTGATGGCGATTAGTAGGAGAAATGCAAGCTTTGTATGCGTGGTAGCTGTCATGTTGGTGATGGCCACCGTG
ATGTTGTCCTGTGACGCTGCTCCAAAAGGTTAAAGATCCTTTCTTTCCTATTTTATATATACCTGATATTTTCCTTGCAG
CTATGCTTGTA--GCTGATAGCACGCATCAACAATGACCGACGAATGAACTCATATTGTATTTAACATGCTAATTCATTT
AATATATATTTTTAGAATCATGCCATGGGCTTGAAGATGGATGCGACGAACCGAAGTGCAAGGAATATTGTGTGCTCACT
TGTTACACCAAGGGATCTCATTGT---AGGGCTGAAGATTGTTGTTGTTTGATTGCTGCCAAGCCCATGGTGGACGTGCT
CCGTCGTCATGATTGAGCGGTTACGAACGTTATTTTTATTTATTACATATATGACAAAAGGTTCCGTGCGTTGCAATGGA
TA-AAAATAAATAAACTCTAAACAAAAACATTTAGCATCTCCTATCACCATTGCAGAAAGTGAGCCATCAATGGGCAACC
TGGGCGAGCATTTGGGACAACTCCTCCTTTTATCTCCTTCCATAAATGCTCCCGAATTTCTTCAAATGATGCACTTGGTC
ATGACTCTAGAACCTTGGCTGCACAGATCATGCGTTACCTATCCTCCAACTCAACTCATTTCATGACAAGAAGTGGTAGA
AAGATATAAAATATGCTTAGGTTCCACTTGATTCTTAAGTACCTCTCTGGCATCACAGACAAATGGGCTCTCTAACTCTG
AAAGCATGTCAAGAAGTTAAGTGTTATAAAGCTCCAAAGTGCATCTTGAACATAATACCAATTAAATCTAATCTAAGCTT
TGTTGTCGTGTGTGTGCACTTGCAGAACTGTACTTATCAACGAACCAAAATATATAACATGCAAGGAGACTTGCATTGTT
ATCAGATGCAATGGAAATGGACATATATACATATATTGCTATGTGTTTGATCAACCTCAAAAAATATTATTACTTTTGAA
GCCGTGTGTTGCAATGGGGCATAATGAACCAAACACTAGTGTAGAAAATCCTAGTAGCGGCGTTCGTGAAACGTCGTTAT
TGGCGCGGAAGGGCGATGGCGCTAGTATTAAGCGGCTGATAAGGCTCACTAGCAGCGCCGGCATCCAACGTCGAGAGAAA
CATCCTATACTTCCCTCGCCACGATGACGCTAGTCTAGACAAAATGTTGACCATGTATATGAAAAATTTATATATAAAAA
TATACAATGTGTGTGAGAAAAGTTGATCATCTATTTAAACAAAATGTTAATTAAGCTTTTGAAACAGAAATGCTGACCAT
GTATCAAAAAATGTTAAAATTGTATTTTAAAAACAATAAATGTGTATAGAAAAAATG
>chr2A_443
TTTTCT--------------------------------------------------------------------------
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-----------------------------------------------TTTCTGGATCAGATATTTTTATTGTGAGG--GA
TCTTTAGATTTAGACCGAATATTGGATAGATAGACCGGACACGCCAAACAATGAAACAAATAAATTCATACTATTAAATC
AGTGAGGTGATAAGTATGCAGGTCTACACAAGCATAGGATAAAATAAACCATTAATTCCAACATGAACTCTTTCTTATGT
GACAGATCTTCAGATCTTGACTGTATACTGGATATATATGCCGGACGCAACCAAAAAGGGAATAAATCAATTTATCAGTA
TAAAATTAGTTAGGAGATAAGTATGCATGTCTATTCAATTTATATGCATTAATCAATTCATTAATTCCACCCTAAATTTA
GGATGACATTTAATTATCAGG----ATAGAACTCAGGATCGATTAGCATGCTCTCCCCTATATAAATGCTAGCAAATCGA
GCTGCTCTTCAACACATTTGGTAGATCAAATCAAACGGTAAAAAGAAGAGAGAATATCAGTAC------ATAGCTAGCAT
TGTATCTTGTGATGGCGATTAGTAAGAAAAATGCAAGCTTTCTATGCTTAGGAGTCCTCATGTTGGTGATGGCGACTATT
ATGTTGTCATGTGATGCGGATCCAAAAGGTTA-GCATCCTTTAATTCCTATTGTGTATATACCTAAAA-TTTCCTTGCAA
CTATGCTTGTA--GCTAATAGCACGCATCGACAATGACCGATGAATGAACCCATATCA---TTAACATGGCAATTCAATT
AATGTTTTTGTGTAGAAAGGTGCTACGAGATTGAAGATGGATGTGATGAAACTAAGTGCATGGAAAATTGTGTGGGCACT
GGTCACACCAAGGGATTTCATTGTCGTGATGTCGGTGAATGTTGTTGTTTGATTTCTGCCAAGACGAATGTGGACGTCAT
CCATCGCCATGATTGAGCACCTAGAAGCGTAGTTTATCTGTATTAGATGTGTAGCAAAAGGGCCCATGCGTTGCAACGGG
TCCAAACTAAATAAATTGTAAACAGAAACATTTAGCTCCTCTCATAACCATTGCATAGACTGAGTCATCAA---------
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>chr2B_819
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--------------------------TAAAACTCAGGATGAATTTGCTTGCTAGGCCCTATATAAACGATAGCAAAACGA
GTTGCTCGTCAACACATTTGGAAGATCAGATCAAACGGCAGAAAGAATAGAGGATATCAGTATCAGTATATAGCTAGGAC
TGTATCTCGTGATGGCGATTAGTACAAGATATGCAAGCTTTGTATGCTTGGCAGCCCTCATGTTGGTAATGTCCACCGTG
ATGTTGTACTGTGAGGCTGATCGAAAAGGTAACGCATACTTTCTTTCCTATAGTGTATATACCAAATATTTTCCTTGCAG
CTAAGCTTGTATAGCTGATAGCA--CATCGACAATGACGGATGAATGAACC-ATATTGTATTTAAGATGGTATTTCATTT
ATTCTTTTTATGTAGAATCATGCTATGGGGTTGAAGATGGATGTGATGAACCGAAGTGCAAGGAATATTGTGTGCTCACT
GGTCACACCAAGGGATCTCATTGCCCGAGTGCTGAAGAATGTTGTTGTTTTAGTGCCGCCAAGCCAAATGTGAACGTCGT
CCGTCGTCGTGATTGAGCTCCTAAGAGCGTTGTTTTTCTTTATTAGATATATAGCAAAAGGGCCCGGGCTTTGAAATGGG
TAAGAAATAAATAAACATTAAACATAATCATTTAGCACCTCCCATCAGCATTGCAGAAAGTGAGTCATCAATGCGCCACC
TGGGCCGGGATTTGGG----------------------------------------------------------------
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>SNPs
S-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS---------S--S--S-SSS--
-S---S---S-S---S-S--------S--------SS---S-S--SS-S--SSS---S---S---S--SS----S--S--
---S---S----------------S--SS--SSSSS-S-S---SS--S-S---S-S-----S-SS--------S------
-----SS-----S-----SS---S---S------S----S----SSS----S-------S--S----S----S-SSSS--
----SSS---S--SS------------S--------S-SS--------S--------SS----------S--S---S---
-----SS------S--S--SSSSSS----------S-----------S---------------------------SSS--
-------------------------------------S----------------S----S--------------------
------------------------S----------------------S---S---SS-----------------------
--------------S----S------------SSS-----------------S-S---------S---------------
-----------------------------S-----------S--------S------------------S----------
---S-S-S-S-S-----------S-----S-------------S--S---------------------------------
S--S-------------------------S--------S--------------------------S-SS--------SS-
------------------SSS--S--S----S-----S-------S------SS-------SS----------------S
-----------------S------S------------S----S---------------------S--------S--S---
-----SS-S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_334
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--------------------------------------------------------------------------CAGATA
GAACAGACGCGCCT------------------------------------------------------------------
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>reverse_2047
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----------------------------------------------AATCCTAGTAGCGGCGTTCG--------------
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