>input_sequence_83181
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------ATGGCGTCC
AACACTCTGCACGGCCGGCTGGTGACTCCTCTTGCTGTCGTGGTTGTCGGGAGGTTCGCCTCCCTCTTCTCAGCCTGTGC
CATGCTCGCCGGCACGCCCTTCTCTCACACACATCTCAGTGGCCGCCGTGGTCGGGAGCGTCAAAAATTGAGGGCAACCC
AGTCTGGGATTATACCGTCCTCCATGGCCAACAACGCCACAGCAGCCCGGCCGTCTAGTTGCGCTTCTTCCCGCGCTATA
CCCCGGTGCACCAGCACAGCGACCCGCTGTTCGCCGCGGCCTTCCCGTCGACTTGGGGCAGCGGGGCGTTCGACCAGGGG
TGGCGGCGC----------------------------GGGTTGA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr6A_1_TraesCS6A01G191300
ACCGGCAGGGGAAAGAAGCTGAG-------GGGAGAGGATAGGCACGATGTTGGGAGCAGGGAGATGGGGGATGACCAGC
GCGGCAGCATAGTAGGAGATGGGGCGGTGACGTATCGGGAGAGAAGACCGTCGAGAGAGGACGAAGGAGACACTACACAC
ATCCGGTGCGCTCGAT-TCCTTTTTGGATG-ACCTGTGCTCGCACGAGGTCATCCAACGGTCCCCAGCCGGTCGCTCGAT
GATGCGAACTCCGACGAGAGTGTGCAACTCTGCGATCGTACTTGACCTACTACCCGACGAGAGTGTGCAACCCTGTGGTC
CTACGTGTGCGACTATGTCGCCGCGCGTGTGCAACTCTCACAGGCGTGCGTGAGTTACTATGCTGACAAGAGTATGCAGC
TCCATGCCG-CGCTGTGCGACTATGATGATGAGAGTATGCAACCCTGTGGTTGTGCATGTGCGACTGTGCTGACGAAAGT
GTACAACTCTGCAGCCGCGTGTGTGCGACTATGCCGCGAGAGTGTGCAACTTCGGCAGCTGCCCTACCCAACTACGCGGC
AGTCAATGTGCAACTCCAAAAGCATGGTTGTGCAACTTTACACGGTTTTCCGACAACCGTAGAATATTAAAATGTTCAAA
AA-CTTAAGCTGAATATTTGATATACCCACAGATCCATATCAACAACCACAAAACATGAACTGCGTCAAGGGAAGAAACA
TGCTTTAGTACAAGAGTATTCTCTTCATAGTCTGAATTCTCTTTTT----TTTAACACCTCATAATCTGAATTCTTGGTT
GTGCAGGAACTGTAATCCACTGAAACTACCTA-GTGTTGGAAGTTGGGCATTTCGATGATCACCACGTTGAGCCGTTAGC
GGGTTCGTGTAATCAAGAAACCCAGAAATCAGGCATAGAAGATCCCTTTGCCTCCATCACTAACCCCCTCTCTGTATTAG
TATCTTTGCAAAGCTCCAAAGCACGATATATGAAACTGACGCATATAATG---------------GCGTCCATGGCGTCC
AACACTCTGCACGGCCGGCTGGTGACTCCTCTTGCTGTCGTGGTTGTCGGGAGGTTCGCCTCCCTCTTCTCAGCCTGTGC
CATGCTCGCCGGCACGCCCTTCTCTCACACACATCTCAGTGGCCGCCGTGGTCGGGAGCGTCAAAAATTGAGGGCAACCC
AGTCTGGGATTATACCGTCCTCCATGGCCAACAACGCCACAGCAGCCCGGCCGTCTAGTTGCGCTTCTTCCCGCGCTATA
CCCCGGTGCACCAGCACAGCGACCCGCTGTTCGCCGCGGCCTTCCCGTCGACTTGGGGCAGCGGGGCGTTCGACCAGGGG
TGGCGGCGC----------------------------GGGTTGATCTACAGCAGCGGAGGATGCGGTGGACCAGCGGCAG
GAACGGCTAGGCAGAGGGTGCGCCGGCGACTACGCCGACT----------GCCATGGCGCCATGGTTGCTCGCGAGAGAG
GGGAAATCAGGGATGGGTTG---------------------GTCGTTCGGGCCGCAGTGGGTCTTGTCGCAGAGCGGCGA
GCAGCCAGGCACGCGTGAGGATACGGGCAAAATCGAGCGGACAGGAGCCAGCCGCTCGTTTTGCCCAAATAATGCGTAAG
CACTTTTTAGATTTTAGGATAAATGAATGCGGAGGAAGGAATGCGGTCATTTTTTTGTCGTGCAAAAATACAACCGATCA
AAGCAGTTGGAACGTCGTCTGGTGGTTCCAAGAGTCACGGCAATCCCCGCAAAAAAAAGTCACGGCAATCAGATGCCTTG
GGAGTTTTTTTCCGATAAACTTCTTCCCCCTTATTCATTTATAAGTAAAGTAGCATCGTTTTGGTATTAATTAGAGCTAG
CCATTGGACGCAATATATGCGTACCGTGGAGACATTGTATGTTCAATGTGACTCTGTGCACATGGTCATGGTATGGCACG
TTCCACTAGATGAGGTATGAGTCACGGCTCTTCCTATTTTGACTTTTAACAAAATAAATAAAGGGTATCTGATTATGGCG
TGACAACCAGCATCATTAACTGGCATTTGTAAATACTCGTGATAATTTATATGATATATGTGCTTTTTTGAAGTTACATG
CATGAATAAAATGACTGTGGATTGCAAACCTCTTAGACTCACCTAAAATAACCCTAAAC--------AAAGACTCACCTA
AAATATGTGACGAACATGCTACTACATAAACTCATTATAAAGCAAAGTAGAACCAAACACATTTCAAATGTAGCTATTTC
TTTTGAACATATATGACACCATATACCATGCATAACTTGAGC-TTTTTCCATGCCTTATGAATGGTGCTTTCTTTTTTCA
TATAGAATTGCCTATAAATTCAGAGACAACATTAAAACTTCCTA
>chr6D_1
ACCGGCAAGGGAAAGAAGCTGAGGGTAGAAGGGAGAGGATGGGCACGATGTTGGGAGCAGGGAGATGGGGGATGACCAGC
GCGGCAGCATAGTAGGAGATGGGGGGGCGGCGTATCGGGAGAGAAGACCGTCGAGAGAGGAAGAAGGAGACGCTACACAG
ATCTGGTGCGCTCGGACTCCTTTTTGTCGGCACCTGTGCCCGCACGAGGTCATCCGACGGTCCCCAGCCGGCCGCTCGAT
GATGCGAACTCCGACGAGAGTGTGCAACTCCGCGATCGTGCGTGAACTACTTCTCGATGAGAGTGTGCAACCCCGTGGTC
CTACGTGTGCGACTATGTCACCGCGCGTGTGCAACTCTCGCATGCGTGCGTGAGTTACTATGCTGACAAGAGTATGCCGC
TCCACGGCCACGCTGTGCGACTATGATGATGAGAGTATGCAACCCTGTGGTCGTGCGTGTGCGACTGTGCTGACGAAAGT
GTGCAACTCTGCAGCCGCGCGTGTGCGACTATGCTGCGAGAGTGTGCAACTTCGGCAGCTGCCCTACCCAACTACGCGGC
AGTCAGTGTGCAACTCCAAAAGCATGGTTGTGCAACTTTGCACGGTTTTACGACAACCGCAGAATATTGAAATGTTCAAA
AA-TTTAAGCTGGATATTTGATATACCCACAGATCCATATCAACAACCACAAAACATGAACCACGTCAAGGGAAGAAACA
TGCTTTAGTACAAGAGTGTTCTCTTCATAGTCTGAATTCTCTTTTTCTTTTTGAACACCTCATAGTCTGAATTCTTGGTT
GTGCAGGAACTGTAATCCACTGAAACTACCTA-GTATTGGAAGTTGGGCATTCCGATGATCACCACGTTGAGCCGTTAGC
GGGTTCGTGTAATCAACAAACCCAGAAATCAGGCATAGAAAATCCCTTTGCCTCCGCCACTAACCCCCTCTCTGTATTAG
TATCTTTGCAAAGCT-------------TATGAAACTGACGCATATAATGGCGTCCATGGCGGCTGCGTCCATGGCGTCC
AACACTCTGCACGGCCGGCTGGTGACTCCTCCTGCCGTCGTGGTTGTCGGGAGGTTCGCCTCCCTCTTCTCAGCCTGCGC
CATGCTCGCCGGCACGCCCTTCTCTCACACACATCTCTGTGGCCGCCGTGGTCGGGAGCGTCAAAAATTGAGGGCAACCC
AGCCTGGGATTACACCGTCCTCCATGGCCAACAACGCCACAGCAGCCCGGCCGTCTAGCTGCGCTTCTTCCCGCGCTATA
CCCCGGTGCACCAGCACAGCGGCCCGCTGTTCGCCGCAGCCTTCCCGTCGACTTGGGGCAGCGGGGCGTTCGACCAGGGG
TGGCGGCGC----------------------------GGGTTGATCTGCAGCAGCGGAGGATGCGGTGGACCAGTGGCAG
GAACGGCTAGGCAGAGGGTGCGCCGGCGACTACGCCGACT----------GCCATGGTCGCTC----GCGCGAGAGAGAG
GGGAAATCAGGGGTGGGTTG---------------------GT---------------------TGTCGCGTAGTGGCGA
GC-GCTAGGCACGCGTGAGAATACGGGCAAGATCGAGCGGACAGGAGCCGGCCGTTCGTTCTGCCCAAATAATGCGTAAG
CACTTTTTAGATTTTAGAAAAAT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chrUn_601
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CGACAACCGCAGAATATTGAAATGTTCAAA
AAATTTAAGCTGAATATTTGATATACCCACATATCCATATCAACAACCGCAAAACTTGAACCACGTCAAGGGAAAAAACA
TGCTTTCGTACAAGAGTATTCTGTTCATAGTCTGATTT---------TTTTTGAACACCTCATAGTCTGAATTCTTGGTT
GTGCAGGAATTGTAATCCACTGAAACTACCTAAGTGTTGGAAGTTGGGCATTCTGATGATCACCACGTTGAGCCG-----
-GGTTCGTGTAATCAAGAAACCTAGAAATCAGGCATAG-AAATCCCTTTGCCTCCACCACTAACCCCCTCTCTGTAT---
TATCTTTGCAAAGCTCCAAAGCACGATATATGAAACTGACGCATATAATGGCGTCCATGGCTGCTGCGTCCATAGCGTCC
AACACTCTGCACGGCCGGCTGGTGACTCCTCCTGCCGTCGTGGTTGTCGGGAGGTTCGCCTCCCTCTTCTCAGCCTGCGC
CATGCTCACCGTCATGCCCTTCTCTCTCACACATCTCAGTGCCCGCCGTGGTCGGGAGCGTCAAAAATTGAGGGCAACCC
AGCCCGGGATTACAACGTCCTCCATGACCAACAACCCCACAGCAGCCCTGCCATCTAGCTGCGCTTCTTCCCGCGCTATA
CCCCGGTGCACCAGCACAGCGGCCCGCTGTTCGCCGCGGCCTTCCCGTTGACTTGAGGCGGCGGGGCGTTCGACCAGGGG
TGGCGGCGCGGCCGACCTTGACCGGGGCGACCCGCGTGGGTTGATCTGCAGCAGCGGAGGATGCGGTGGACCAGC-GCAG
GAACGGCTAGGCAGAGGGTGCGTCGGCGACTACGCCGGCTGCCATG--GCGCCATGGTCGCTC----GCGCGAGAGAGAG
GGGAAATCAGGGGTGGGTTGGTTGTTCGGGCCGCACTGGGTGT---------------------TGTGGCTTAGCGGCGA
GC-GTCAGGCACGCGTGAGGATACGGGCGAGATCGAGCGGACAGGAGCCAGCTGTTCGTTCTGTGCAAATAGTGCGTAAG
CACTTTTTAGATTTTAGG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr2B_995
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GCGTCCATGGCGTCC
AACAGTGTGCACGGCCGGCTGGTGACTCCTCCTGCCGTCGTGGTTGTCGGGAGGTTCGCCTCCCTCTTCTCAGCCTGCGC
CATGCTCGTCGTCACGCCCTTCTCTCTCACACATCTCAGTGCCCGTCGTGGTCGGGAGCGTCAAAAATTGAGGGCAACCT
AGCCCGGGATTACAGCGTCCTCCATTGCCAACAACCCCACAGCAGCCCGGCCATCTAGCTGCGCTTCTTCCCGGGCTATA
CCCCGGTGCACCAGCACAGCGGCCCGCTGTTCGCCGCGGCCTTCCCGTTGACTTGGGGCGGCGGGGCGTTCGACCAGGGG
TGGCGGCGCGACCGACCTTGACCGGGGCGACCCGCGCGGGTTGATCTGCAGCAGTGGAGGATGCGGTGGACCAAC-ACAG
AAACGACTAGGCAGAGGGTGCGTCGGCGACTACGCTGACTGCCATGGCGCGCCATGGTCGCTC----GCGCGCGAGAGAG
GGGAAATCAGGGGTGGGTTGGTCATTCGGGCCGCAGTGGGTGT---------------------TGTCGCTTAGCGGCGA
GC-GCCAGGCACGCGTCAGGATACGGGCGAGATCGAGCGGACAGGAGGCAGCCGCTCGTTCTGTCCGAATAGTGCGTAAG
CACTTTTTAGATTTTAGG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr6D_1608
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GATAAGTGAATGCGGAAGAAGGAATTCGATCATTTTTTTGTCTTGCAAAAATTCAACCGATCA
AAGCAGTTGGAACGTCGTCCGGTGGTTCCAAGAGTCACGGCAATCAGACGCCTGTGGGAGTAATATACCAGAATTTGCTC
ATTTTCAGGTTTTTTGTTATTGTTTATCCATGGTA----------------------------GTATTAATTAGACCTAG
CCATTGGACGCAATATATGCGTACCGTGGAGACATTGTATGTTCAACGTGACTCTGTGCACATGGTCATGGTATGGCACG
TTCCACTAGATGAGGTATGAGTCACGGCTCTTCCTATTTTGCCTTTTAACAAAATAAATAAAGGGTATCTGATTATGGCG
TGACAACCGGCATCACTAACTGGCATTTGTAAATACTCTTTATACTTTACATGATATATGTGCTTTTTTGAAGTTACATG
CACGAACAAAATGACTGAGGATTGCAAACCTCTTAGACTCACCTAAAATAACCCTCAAAATAAGATAAAAGACTCACCTA
AAATATGTGACGAACATGCTACTACATAAACTCATTATAAAGCAAAGTAGAACCAAACACATTTCAAATGTAGCTAG---
--TTGAACATATATGACACCATACACCATGCATAACTTAAGCTTTTTTCCATGCCTTATGAATGGTGCTTTCTTTTTTCA
TATAGAATTGCCTATAAATTCAGAGACAACATTAAGACTTCCTA
>SNPs
-------S--------------------------------S---------------------------------------
------------------------S--S-S-------------------------------S---------S-------S
---S----------SS----------SSS----------S---------------S---------------S--------
------------------------------S--------S-S---S-----S-S---S---------------S------
-------------------S-------------------S--S----------------------------------S--
----S-S-S------------------------------------------S----S-----------------------
--S----------------S--------------S---------------------------------------------
-----S---------------------------------S---------S---------S--------S-----------
---S---------------------------------------------------------SS-----------------
----------------------------------------------------S-----------S---------------
----------------------------------------------------S---------------------------
----------------------------------------S---------------S-----------------------
--------------------------------------------------------------------------------
-------------------------------S---S-----------------------------------------S--
--------------------------------------------------------------------------------
--S---------S---------------------------------------------S---------------------
---------------------S----------------------------------------------------------
-----------------------------------------------S--------------------------------
---------------------------------------------------------SSS-SSSSSS--S----------
------------S------------------------------SSSSSSSSSSSSSSSSSSSSS------SS--------
--S---------------------------S-----------------------------S-------------------
----------------------S----------S--------S--S-------------S---------S----------
-------------------S-------------------------SSSSSSSSSSSSSSSS-SSSS-SSSSS--SSSS-S
SSSS-SSSS--SSSSSSS-S-SS--SS--S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S----
----------------------------------------------S---------------------------------
-----------------------------------------S--------------------------------------
--------S------S----------------------S-S---S----S------------------------------
--S---S----------S-------------------------------------S--S---------------------
----------------------------------------------------------------------------SSSS
SS---------------------S--------------S-----------------------------------------
-----------------------------------S--------
>forward_108
--------------------------------------------------------------------------------
--------ATAGTAGGAGATGGGGCGGT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>reverse_1967
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TGTGACTCTGTGCACATGGT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
