>input_sequence_83163
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------ATGGTCGTCCCTCCACCAGACAGGGC
CGCTAGGATCGTCGGTTTTCTCAAGCCCTACCTTTTGAGGATGCATTTCTCGAACAAGTATGTAACTGCCCAGGTCATCC
ATACCCCAACAGCAACCGTCGCGTGTTCTGCAAGCTCGCAGGAGAAGCTGCTGAGACCGAACTTGGAGTCGACCCGCGAC
GTATCTGCCGCCGCAAAGATTGGGAAGTTGCTGGGGGAGCGCCTGCTGCTCAAGGGGATACCTGCCGTGTCCATCCACAT
GAAGAGAGAGCAGAAGTACCACGGGAAAGTCAAGGCTGTTATAGATTCTGTCAGAGAATCTGGTGTCAAGCTGTTGTGA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr3A_1_TraesCS3A01G175500
CAATATTTTGCCTAGCCAACATTTTTGTATCTCTTGGCTTGGACCAATGTTCAGGCTATCGGTAACTGGTACCATATCAG
TTGGGTGCTGAGTAGGGATTAATGGGCGAATAGGCCATTTTTACTGAATTTATCGGTAACCCATTTATCGGGAGGTATAA
CTAGGGCCATATCTATATATCCTAGGCTATACAGCGACGTGCAATGTACTGAGTGTCTAAATACGCAATCCTAGGCTACA
TAGCAACAAGGAAAATTGTTGCCTTGATGTTCTAATGATGTTGCAGCTGATCTGGAAGTTTATAAACCTGAACATTGAAA
AGTAGGAAGGGAATGGCCTAGTTTTGGGCTAAAAACTGCCTAGTAGTTAATTAGCCCAGCCAATAATTCGGCCTGACAGC
TGATAAATCGGCTTGTCAGACAAATTAACTGGACCTACCAGTTAATGGCTCGAATAGCACGTTCTCGTATCT-GAGGGGT
CCGAATAACAGTTAACTAC-----TCTACAGTTAACTG------ACCGGTATTTGGAGCAGTGGCTTGGACTCAAACCAA
ACACACCTAAGGTGCAACTGTGCAAATCAAGATTCTTACCTATTAGCTATTGTGTATGAGCAAAAAGGTTGTGCGAGTTT
CCTGGTATAGCTCCTTGTCACAATGGTTCAAACACTGGAGCTAAGTACTAGATTCAGTATCAGGTTATCTACTTAGCAGG
CAACTTTACTTGGATTTTGCACCTGCTATTGATTTCATTCTCTTTCTTTTAAGATCGTCAATTTATCATGCACTGCCGCT
CCCTGTCTACACCAGTGGCAAGAATTTGTTTTATGAATTGTTTAGCAATTGCATTAATACTGTATTCCTCAGTGTGTTCT
GATATCCTGATTTTTAACATCGACCGCTGATAATTTAAAACTGGTTTATAGATTGGGT--AATTGAAATGTATTCACATT
GTCAATTGACTAATACGTGCTGCTTGTTACCTTGCTACAGAGAAACCAGTAACAATGGTCGTCCCTCCACCAGACAGGGC
CGCTAGGATCGTCGGTTTTCTCAAGCCCTACCTTTTGAGGATGCATTTCTCGAACAAGTATGTAACTGCCCAGGTCATCC
ATACCCCAACAGCAACCGTCGCGTGTTCTGCAAGCTCGCAGGAGAAGCTGCTGAGACCGAACTTGGAGTCGACCCGCGAC
GTATCTGCCGCCGCAAAGATTGGGAAGTTGCTGGGGGAGCGCCTGCTGCTCAAGGGGATACCTGCCGTGTCCATCCACAT
GAAGAGAGAGCAGAAGTACCACGGGAAAGTCAAGGCTGTTATAGATTCTGTCAGAGAATCTGGTGTCAAGCTGTTGTGAT
GGTGAAAACATAGAGCTCGGCTTAGCATTTGCGCAGTCTTGAGCTGCATTTCTGATTTTTGGACTGATT----GCAACTT
TTGTGTTCATGAATTTGGCAATGAACGAACGTTTGTCCGGGA-CTCCA-GGTCAATAAAAGGACTCTGTTGTAGGAGCTC
GACCTGATAATCTGCAGTAGCACTTTTTA---TTTGAAACAAATCTGCTGTAGCACTTGATGACTTGAGGATCAACAGCC
TGTTATGTTTCTCCTCTCCGAAATGCAACGGAGATTATTGGGCTGGAGATATTCTGGACTTGCTTGCCTGTGATGCTAAA
TTTGCTATTCAAGACTGTTTG----------------------------------ATGGAGCATGGTGTGACTTCTTTTG
CGTGTGGATTAATGCGTGATCGCGACTGCCGAGTGTATCTTGCCGTTAAGCTTTC---------TCAGCTATCCATAGCG
TAGCACCATGTGCCTACGAAGATTCTTCTTGATTTTTT------CTATTATCTTGGAGAGCACGTTGATATTTTTCTGGC
AAACTGTTTGCTGGCAGTAGTACATGCTAAACCTCAAGATCGTATTGTATTATTTTTAGAAGATACTAGTACCTTTTTGA
GGGATTATTAGTATTGATGATCGTTTCTTTTAGGAGATGCTAATCTTGAAGGTAGTATAATTGCATTTGCGGTG------
-TTCATTGTCATGTCCCTGGCAAGAAACAGTATTAAGAAGATACATGGTGTGTGACTTTGTGTGCATGACTCTTTTTTCC
CCCTCCACATCTATATATAGGAGTATACTGCTCCCTCCGTAAAGAAATATAACAGCGTTTAGATTCCTTTACAGAGGAAG
TACTGATTCCTTTACAGAGGAAGTACTATATAGCTAAAATTAAATCAATTTTTCTTTTGCAACATAAAAGAGTTTTATTG
CTTACTTAAGCAGGCATACAGTCACGATACAACGTGTTCATTAGGAAAACATGAGTGTAATTAAGCCATAAACATCTTCT
TCTAACACTTGTCGCCTGCGTCGC
>chr3B_1
CAATATTTTGGCTAGCCAACTTTTTCGTATCTCTTGGCTTGGACCAATGTTCAGGCTATCGGTAACTGGTACCATATCAG
TTGGGTGCTGAGTAGGGATTAATGGGCGAATAGGCCA-TTTTACTGAATTTATCGGTAACGCATTTATCGGGAGGT-TAA
CTAGGGCCATATCTATATATCCTAGGCTATACAGCAACATGCAATGTACTGAGTGTCTAAATACGCAATCCTAGGCTACA
TAGCAATAAGGAAAATTGTGGCCTTGATGTTCTAATGATGCTGCAGCTGATCTGGAAGTTCATAAACCTGAACACTGAAA
AGTAGGAAGGGAATAGCCCAGTTTTGGGCTAAAAAATGCCTAGTAGTTAATTCGCCCAGCCAATAATTCGGCCCGACAGC
TGATAAATCGGCTTGTCAGACAAATGAACTGGACCTACCAGTTAATGGCTCGAATAGCACGTTCTCGTATCGGGAGGGGT
CTGAATAACAGTTAACTAC-----TCGACAGTTAACTG------ACCGATATTTGGAACAGTGGCTTGGACTCAAACCAA
ACACACCTAAGGTGCAACTGTGCAAATCAAGATTCTTACCTATTAGCTATTGTGTATGAGCAAAAAGGTTATGTGAGTTT
CCTGGTATAGCTCCTTGTCACAATGGTTCAAACACTGTAGCTAAGTACTAGATTCAGTATCAGGTTATCTACTTAGCAGG
CAACTTTACTTGGATTTTGCGCCCGCTATTGATTTTCTTCTCTTTCTTTTAAGATCGTCAATTTACCATGCACTGTCGCT
CCCTGTCTATACCAG----------------TATGAATTGTTCAACAATTGCATTAATACTGTATTCCTCAGTGCGTTCT
G-TATCCTGATTTTTAACATCGACCGCTGATAATTCAAAACTGGTTTGTAGATTGGGT-AAATTGAAATGTATTCACGTT
GTCAATTGACTAGTACGTGCTGCTTGTTACCTTGCTACAGAGAAACCAGTGAGAATGGTCGTCCCTCCACCAGACAGGGC
CGCTAGGATCGTCGGTTTTCTCAAGCCCTACCTTTTGAGGATGCATTTCTCGAACAAGTATGTAACCGCCCAGGTCATCC
ATACCCCAACAGCAACCGTCGCGTGTTCTGCAAGCTCGCAGGAGAAGCTGCTGAGACCGAACTTGGAGTCGACCCGTGAC
GTCTCTGCCGCGGCAAAGATTGGGAAGCTGCTGGGCGAGCGCCTGCTGCTCAAAGGGATACCTGCCGTGTCCATCCACAT
GAAGAGAGAGCAGAAGTACCACGGGAAAGTCAAGGCCGTTATTGATTCCGTCAGAGAATCTGGTGTGAAGCTGTTGTGAT
GGTGAAAACGTAGAGCTCGTCTTAGCATTTGCGCAGTCTTGAGCTGTATTTCTGATGTTTGGACTGATTCACAGCAACTT
CTCTGTTCATGAATTTGGCGCTAAACGAACGTTTGTCCGGGA-CTCCA-GGTCAATAAAGGGACTCTGTTGTAGGAGCTC
GAACTGATAATCTGCAGTAGCACTTTTTATTTTTTGAAACAAATCTGCAGTAGCACTTGATGACTCGAGGATAAACAGCC
TGTTATGTTTCTCCTCTCCGAAATGTAACGGAGATTATTGGGCTGGAGATATTCCGGACTTGGTTGCCTGTGATGCTAAA
TTTGGTATTCAAGACTGTTTAATGGAGCGGATGCTCAAAAAAAAAATACTGTTTAATGGAGCATGGTGTGACTTCTTTTG
CGTGTGGATTAATGCGTGATCGCGACTGCCGAGTGTATCTTGCCGTTAAGCTTTCTTCAGATGCTCAGCTATCCATAGCG
TAGCACCATGTGCCTATGAAGATTCTTCTCGATTTCTTCAAGTACTATTCTCTTGGAGAGCACGTTGATATTTTTCTGGC
AAACTATTTGCTGT---TAGTACATGCTTAGCCTCAGGATCGTATTTC-----TTTTAGAAGA---TAGTACTTTTTTGA
GGGATTCTTAGTATTGAT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr3D_329
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GGGAATGGCCCAGTTTTGGGCTAAAAAATGCCTAGCAGTTAATTGGCCCAGCCAATAATTCGGCCTGACAGC
TGATAAATCGGCTTGCCAGACAAATTAACTGGACCTACCAGTTAATGGCTCGAATAGCACGTTCTTGTATCGGGAGGGGT
CCGAATAACAGTTAACTGACCATATCGACAGTTAACTCACCGTCACCGATATTTGGAACAGTGGCTTGGACTCAAACCAA
ACACACCTAAGGTGCAGCTGTGCAAATCAAGATTCTTACCTATTAGCTATTGTGTATGAGCAAAAAGGTTATGCAAGTTT
CCTGGTATAGCTCCTTGTCACAATGGTTCAAACACTGGAGCTAAGTACTAGATTCAGTATCAGGTTATCTACTTAGCAGG
CAACTTTACTTGCGTTTTGCAACCGCTATTGATTTCATTCTCTTTCTTTTAAGATTGTCAATTTATCATGCACTGTCGCT
CCCTGTCTATACCAGGGGCAAGAATTTGTTTTATGAATTGTTTAGCAATTGCATTAATACTGCATTCCTCAGTGTGTTCT
G-TATCCTGATTTTTAACATCGACCGCTGATAATTTAAAACTGGTTTGTAGATTGGGT--AATTGAAATGTATTCACATT
GTCAATTGACTAATCCGTGCTGCTTGTTACCTTGCTACAGAGAAACCAGTGACAATGGTCGTCCCTCCACCAGACAGGGC
CGCTAGGATCGTCGGTTTTCTCAAGCCCTACCTTTTGAGGATGCATTTCTCGAACAAGTATGTAACCGCCCAGGTCATCC
ATACCCCAACAGCAACCGTCGCGTGTTCTGCAAGCTCGCAGGAGAAGCTGTTGAGACCGAACTTGGAGTCGACCCGCGAC
GTCTCTGCCGCGGCAAAGATTGGGAAGCTGCTGGGCGAGCGCCTGCTACTCAAGGGGATACCTGCCGTGTCCGTCCACAT
GAAGAGAGAGCAGAAGTACCACGGGAAAGTCAAGGCTGTTATAGATTCTGTCAGAGAATCTGGTGTCAAGCTGTTGTGAT
GGTGAAAACATAGAGCTCGGCTTAGCATTTGCGCAGTCTTGAGCTGTATTTCTGATGTTTGGACTGATTCACAGCAACTT
TTGTGTTCATGAATTTGGCACTAAACGAACGTTTGTCCGGGA-CTCCA-GGTCAATAAAGGGACTGTGTTGTAGGAGCTC
GACCTGATAATCTGCAGTAGCACTTTTTTTTTTTTGAAACAAATCTGCAGTAGCACTTGATGACTCGAGGATAAACAGCC
TGTTATGGTT-TCCTCTCCGAAATGTAACGGAGATTATTGGGCTGGAGATATTCCGGACTTGGTTGCCTGTGATGCTAAA
TTTGGTATTCAAGAC---------------------------------------------------TGTGACCTCTTTTG
CGTGTGGATTAATGCATGATCGCGACTG-CGAGTGTATCTTGCCGTTAAGCTTTCTTCAGATGCTCAGCTATCCATAGCG
AAGCACCATGTGCCTCAGAAGATTCTTCTTGATTTTTT------CTATTATCTTGGAGAGCACGTTGATATTTTTCTGGC
AAACTGTTTGCTGT---TAGTACATGCTAAACCTCAAGATCGTATTGTCTTGGGAG----------TAGTATTTTTTTGA
GGGATTCTTAGTATTGATGATCGTTTCTTTCAGGAGATGCTAATCTTTAAGGTAG--TAATTGCATTTGCGGTGTTCATT
CTTCATTGTCATGTCCCTGGCAAGAAACAGTATTAAGAAGACACACGGTGTGTGACTTTGTGTGCATGACATTTTTTTCC
TCTACATC-----TATATAGAAGTATACTACTCCCTCCGT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr3D_908
ACAGGGTTAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GATTGGGT-AATTGAAATGTTATTCACATT
GTCAATTGACTAATATGTGCTACTTGTTACCTTGCTACAGAGAAACCAGCGACAATGGTGATCCCTCCACCAGACAGGGC
AGCTAGAATCGTCGGTTTTCTCAAGCCCAACCTTTTGAGGATGGATTTCTCGAACAAGTTTGTGACCGCCCAGGTGATCC
ACACCCCAACAACAACCGTCCCGTGTTCTGCGAGCTCACGGGAGAAGCTGCTGAGATCGCACATGTAGTCGACCGGCGAC
GTCTCTGCCGCCGCAAAGATTGGAAAGTTGTTGGGCGAGCGCCTGCTGCTCAAGTAGATACCTGCCGTGTCCATCCACAT
GAAGAGAGAGCAGAAGTACCATGGGAAAGTCAAGGCTGTTGTAGATTCTGTCAGAGAAGCTGGTGTCAAGTTGTTGTGAT
GGTGAAAACATAGAGCTCGGCTTAGCATTTGCGCAGTCTT-AGCTGTATTTCTGATGTTTGGACTGATTCACAACCACTT
TTGTGTTTATGAATTCGACGCTAAACGAACGTT-GTCCAGGA-C-CCA-CGTTAATAAAAGGACTGTGTTGTCGGGACTC
AACCTGATAATTTGTTGTAGCACTT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr2A_908
ACGGGGTTAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GATTTGGTAAATTGAAATGTTATTCACATT
TTCAATTGACTAATATGTGCTGCTTGTTACATTGCTACAGAGAAACCAACAACAATGGTGATCCCTCCACCAGACAGAGC
AGCTAGAATCGTCGGTTTTCTCAAGCCGTGCCTTTTGAGGATGCAA-TCTCGAACAAGTATGTGACCGCACAGGTGATCC
ATACCCCAACAACAATCGTCGCGTGTTCTGCGAGCTCACAGGAGAAGCTGCTGAGACCGAACTTGGAGTCGACCCACGAC
GTCTCTGCCACCGCAAAGATTGGGAAGTTGCTGGGCAAGTGCCTGCTGCTCAAGGGGATACCTGCCGTATCCATCCACAT
GAAGAGAGAGCTGAAGTACCATGGGAAAGTCGAGGCTGTTATAGATTCTGTCTGAGAAGCTGCTGTCAAGCTGTTGTGAT
GGTGAAAACATAGAGCTCGGCTTAGCATTTGCGCAGTCTT-AGCTGTATTTCTATTGTTTGGACTGATTCATAGAAACTT
TTGTGTTTATGAATTCAACGCTAAACGAACGTT-GTCCAGTACC-CCAGGGTCAATAAAAGGACTGTGTTGTAGGGAATC
AACCTAATAATATGGTGTAGCAC---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr3A_914
------TTAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GATTTGGTAAATTGAAATGTTATTCACATT
GTCAATTGACTAATATGTGCTGCTTGTTACATTGCTACAGAGAAACCAACAACAATGGTGATCCCTCCACCAGACAGAGC
AGCTAGAATCGTCGGTTTTCTCAAGCCGTGCCTTTTGAGGATGCAA-TCTCGAACAAGTATGTGACCGCCCAAGTGATCC
ATACCCCAACAGCAATCGTCGCGTGTTCTGCGAGCTCACATGAGAAGCTGCTGAGACCGAACTTGGAGTCGACCCACGAC
GTCTCTGCCACCGCAAAGATTGGGAAGTTGCTGGGCAAGTGCCTGCTGCTCAAGGGGATACCTGCCGTGTCCATCCACAT
GAAGAGAGAGCTGAAGTACCATGGGAAAGTCAAGGCTGTTATAGATTCTGTTAGAGAAGCTGGTGTCAAGCTGTTGTGAT
GGTGAAAACATAGAGCTTGGCTTAGCATTTGCGTAGTCTT-AGCTGTATTTCTGTTGTTTGGACTGATTCATAGCAACTT
TTGTGTTTATGAATTCGACGCTAAACGAACGTT-GTCCAGTACC-CTAGGGTCAATAAAAGGACTGTGTTGTAGGGAATC
AGCCTAATAATATGGTGTAGCAC---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr3B_914
------TTAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GATTGGGT-AATTGAAATGTTATTCACATT
GTCAATTGACTAATATGTGCTGCTTGTTACCTTGCTACAGAGAAACCAACGACAATGGTGATCCCTCCACCAGACAGAGC
AGCTAGAATCGTCAGTTTTCTTAAGTCCTACCTTTTGAGTATGCAA-TCTCGAACAAGTATGTGACCGCCCAGGTGATCC
ATACCCCAACAGAAACCGTCACGTGTTCTGCGAGCTCACAGGAGAAGCTGTTGAGACCGAACTTGGAGTCGACCCACGAC
GTCTCTGCCGCCGCAAAGATTGGGAAGTTGCTGGGCGTGTGCCTGCTGCTCAAGGGGATACATGCCGTGTCCATCCACAT
GAAGAGAGAGCAGAAGTACCATGGGAAAGTCAATGCTGTTATAGATTCTGTCAAAGAAGCTGGTGTCAAGCAGTTGTGAT
GGTGAAAACATAGAGCTCGGCTTAGCATTTGCGCAGTTTT-AGCTGTATTTCTGTTGTTTGGATTGATTCATAGCAACTT
TTGTGTTTATGAATTTGACGCTAAAAAAACGTT-GTCCAGTACC-CCA-GGTCAATAAAAGGACCGTGTTGTAGGGATTC
AGCCTAA--ATCTGTTGTAGCACTT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr2B_914
------TTAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GATTGGGT-AATTGAAATGTTATTCACATT
GTCAATTGACTAATATGTGCTACTTGTTACCTTGCTACAGAGAAACCAGCGACAATGGTGATCCCTCCACCAGACAGGGC
AGCTAGAATCGTCAGTTTTCTCAAGCCCAACCTTTTGAGGATGGATTTCTCGAACAAGTTTGTGACCGCCCAGGTGATCC
ACACCCCAACAACAACTGTCCCGTGTTCTGCGAGCTCACAGGAGAAGCTGCTGAGATCGCACATGTAGTCGACCGGCGAC
GTCTCTGCCGCCGCAAAGATTGGAAAGTTGTTGGGCGAGCACCTGCTGCTCAAGTAGATACCTGCCGTGTCCATCCACAT
GAAGAGAGAGCAGAAGTACCATGGGAAAGTCACGGCTGTTATAGATTCTGTCGGAGAAGCTGGTGTCAAGTTGTTGTGAT
GGTGAAAACATAGAGCTCGGCTTAGCATTTGCGCAGTCTT-CGCTGTATTTCTGATGTTTGGACTGATTCACAACCACTT
TTGTGTTTATGAATTCGGCGCTAAACAAACGCT-GTCCGGGA-C-CCA-CGTTAATAAAAGAACTGTGTTGTAGGGACTC
AGCCTGATAATATGTTGTAGCACTT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr7B_914
------TTAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GATTGGGT-AATTGAAATGTTATTCACATT
GTCAATTGACTAATATGTGCTACTTGTTACCTTACTACAGAGAAACCAGCGACAATGGTGATCCCTCCACCAGACAGGGC
AGCTAGAATTGTCAGTTTTCTCAAGCCCAACCTTTTGAGGATGGATTTCTCGAACAAGTTTGTGACCGCCCAGGTGATCC
ACACCCCAACAACAACCGTCCCGTGTTCTGCGAGCTCACAGGAGAAGCTGCTGAGATCGCACATGTAGTCGACCGGCGAC
GTCTCTGCCGCCGCAAAGATTGGAAAGTTGTTGGGCGAGCACGTGCTGCTCAAGTAGATACCTGCCGTGTCCATCCACAT
GAAGAGAGAACAGAAGTACCATGGGAAAGTCACGGCTGTTATAGATTCTGTCGGAGAAGCTGGTGTCAAGTTGTTGTGAT
GGTGAAAACATAGAGCTCGGCTTAGCATTTGCGCAGTCTT-CGCTGTATTTCTGATGTTTGGACTGATTCACAACCACTT
TTGTGTTTATGAATTCGGCGCTAAACAAACGTT-GTCCGGGA-C-CCA-CGTTAATAAAAGAACTGTGTTGTAGGGACTC
AGCCTGATAATCTGTTGTAGCACTT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr5B_914
------TTAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GATTTGGTAAATTGAAATGTTATTCACATT
TTCAATTGACTAATATGTGCTGCTTGTTACATTGCTACAGAGAAACCAACAACAATGGTGATCCCTCCACCAGACAGAGC
AGCTAGAATCGTCGGTTTTCTCAAGCCGTGCCTTTTGAGGATGCAA-TCTCGAACAAGTATGTGACCGCACAGGTGATCC
ATACTCCAACAACAATCGTCGCGTGTTCTGCGAGCTCACAGGAGAAGCTGCTGAGATCGAACTTGGAGTCGACCCACGAC
GTCTCTGCCACCGCAAAGATTGGGAAGTTGCTGGGCAAGTGCCTGCTGCTCAAGGGGATACCTGCCGTATCCATCCACAT
GAAGAGAGAGCTGAAGTACCATGGGAAAGTCGAGGCTGTAATAGCTTCTGTCAGAGAAGCTGGTGTCAAGCTGTTGTGAT
GGTGAAAACATAGAGCTCGGCTTAGCATTTGCGCAGTCTT-AGCTGTATTTCTATTGTTTGGACTGATTCATAGCAACTT
TTGTGTTTATGAATTCAACGCTAAACGAACGTT-GTCCAGTACC-CCAGGGTCAATAAAAGGACTGTGTTGTAGGGAATC
AGCCTAATAATATGGTGTAGCAC---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>SNPs
----------S---------S----S------------------------------------------------------
-------------------------------------S----------------------S---------------S---
-----------------------------------S--S-----------------------------------------
------S------------S--------------------S-------------------S-------------S-----
------------------S----------------S----------------S---------------------------
-----------------------------------------------------------------------S--------
--------------------------S---------------------S--------S----------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
-----------------------S---------------------------------------------------S----
---------S-----S----------------------------------------------------------------
-S---------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
--S--------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------S-----------------------
--------------------S-S---------------------------------------------------------
------------------------------------------------S----------------S------S-------
-------------------------S----------------------------S-------S-----------------
----S---------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
-------------SSSS-------------------------------S--SS----------SSS------S-------
------S-----------------------S----------------S-------SS-----------------------
-----------------------------------------S---S------------------------SS--------
S-SS-SS-SSSSS-------S--------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_816
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------CGCT
CCCTGTCTACACCAGT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>reverse_1655
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TGGACTTGCTTGCCTGTGAT------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
