>input_sequence_83149
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----------------------------------------ATGGCGGACAGGGAGGCCCCACCTGGGTCCGGAATCGGGG
CGAAGCGGAGATGCAGGGACGCCGGCGCCGCGGCGGGCCTACCCGACCCGGCCGCAGCCGCTGGCGGCGGCAACAGGCTC
CTGGCCGGGTACCTCGCGCACGAATTCCTTGCGCGTGGCACGGTCCTGGGTGAAAGGCGCGCGCCCGGCGGGCAAGACAC
GGGCTCGGAGGCGAGTCAGGGCCGGGGGCAGGCCGCGCGGTACGAGGCCGTGGCAGCGCTGGTGCAGGTCGGCGGCGCCT
ACGTTCCCGGGGTGGTGAACCCCGCGCAGCTCGCCGCG-----------------------CCGCGGGGAAGGCGCACAT
GTGTGTAA------------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G169300
GAGCCATTACATCGACGCAGAAGCAAAAGTAGCAAAAAAGGAGCCAAAGGATCAACTACTAAAGCAGTACCATCTACATC
TACAACTATGAACATCTACTAACCTCTTGTGCACAACCCAGGAATCTTCTTCCACTGTCAACAGACTCAAAGGCAACCAA
CTTCTCACACACTGATTGGTGCTCACATCTAACAGGTAGATGTGCAGCAAGGCCTCTCCAATCGGAGCAGTCAATGGTGC
GAGGAGCCTAAAACCAAATCTGGTCAAAAATCCCCAATTTTCGCCTAACCCTAAATGCCAGATGCTGGTGGAGAGGATCT
CACCGGACTGCTTACGGAGTCGCCACCCGACGAGGAGGAGTTGGATCCGTCATCACTCCATGAAACCATGGCGGCTTGCT
TGGCGGCGGCGGCTTGCTGGACGGCAGCGAGGAGGAGCGCTGTGAGCAGAGAGCAAGAACAGAGAGGGGGTGGGCAACGA
GTAGTGCGGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAGTGCGGGTTGATTCGAAGGAAAGGCGTTTTTTTTGT
TTTGCAAAAACACGCGCACTGACCAGCTTGGACCCGAGCAGTCCATTTGTCGCGCTGTGGTTGGTCCAAGACCAAAGTTG
CATATATGATACAATTTGTATGATTGGATAGGTACACTTTACAAATTGTAGGACTAAATCATTACATCCTGAGCAAGTTC
TAGGACCTCAGTGCTTTTACCTCTCCGCTGCCTGTCCTCACAGAACACAGCCCTGTATGTCACCCACCCCATCATCCTAA
AAAGAAAAAAAGGAAAAAAAAAGTCACACACCCCATCGAGATGGCGGACAGGGAGGCCCCACCTGGGTCCGGAATCGGGG
CGAAGCGGAGATGCAGGGACGCCGGCGCCGCGGCGGGCCTACCCGACCCGGCCGCAGCCGCTGGCGGCGGCAACAGGCTC
CTGGCCGGGTACCTCGCGCACGAATTCCTTGCGCGTGGCACGGTCCTGGGTGAAAGGCGCGCGCCCGGCGGGCAAGACAC
GGGCTCGGAGGCGAGTCAGGGCCGGGGGCAGGCCGCGCGGTACGAGGCCGTGGCAGCGCTGGTGCAGGTCGGCGGCGCCT
ACGTTCCCGGGGTGGTGAACCCCGCGCAGCTCGCCGCG-----------------------CCGCGGGGAAGGCGCACAT
GTGTGTAAGTGTAGCTAAGTCCCTGCTGATCATCCGGAGTCCCATTAGTTGGAGCATATGCTGACGATGTAGGTTGGATG
AGCTTGAGATCTGTACAGCTATGTTCTCAATGATACCATACG-----------------------GTAATATTGCCTTGC
TGTGGTTGGTTCTACTAGACACTACTATGTTCTACTAGTAGTGTCTGATCATGTTGGTGTTCATCGACTACTGCATTAAT
TTTTCTTCT---CATCTAGTGATTCCCTAGAACTGAATCTAGGAAAAT-TAGTGCCACTTGCCTGTTGTAAGTTTCCC--
AGGTGCTTAATTCTTAGTTGAGGAAAGCTACAACAAGTACCTT-------------------------------------
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-----------TGCATTGGAGACTTTAGTTGCTTAGCTCTTTAATGTGCTTAGCACCTCATCTTAGCACTAGTGCATTGG
AGGAGGT--------------------------------------------------------------CTTACGCCAAA
AACTATTGCATCAAGCAGACAATCTGAAAACCTGGGATAGGTCATAGGTGATCCTCTATCCATCCACAACTGAGCACAGT
AAT---AACCAGATAAATGTATTTGATGGATGTAACCAGTGATTACATCTTGAGCATGCTGTTCTGCATACAAAGGGCAC
ACA---TGTTCTACCCTCGCTGCGTGGGAACTGCGGTGCGCCGTAGCCCGTGCCGCTCCATGACCCTTCTCATCGCGAGG
GCAGCCGCATCACCAGCCTGCACAGTCCCTGTCGCCATGATGGCCGCAAACTCCTGCTTTATCTCCTCCTGTGCTCGGCT
CTTCGCCCCTCCGAGGGGGTCTGAAGCTGCTGCCGCTGGCAGAGTCACCTTGGCCACCGTCGCTGCTGGAGCAGCAGGTT
GCACGGCTGGCGGGGTGACCATCCTAGTGCCCTCGTCCACTGTCTGGAGCTCAATGCTATTTAGGGAGGTCTCTGTCTGC
GTCGCTGCTGCTGGAGCAGCTGGTTTTGCCGGAGGCGGGATGATGCCACCATCACTGTTGACCATTTCATCAGCCCCGGT
TTCATTGGCGGTGACTGATCTTGACTCTATCTG
>chr1A_900
CCTTC---------------------------------------------------------------------------
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-------------------------CGCTGCCCGTCCTCACAGAACGGCTTCC----TGTCACACACCCCATCATCCTAA
AAAAAAAGG------AAAAAAAGTCAAACACCCCATCGAGATGGCGGACAGGGAGGCCCCACCTGGGTCCGGGTCCGGGA
GGAAGCGGAGATGCAGGGACGCCGGCGCCGCGGCGGGCCTACCTGACCCGGCCGCCGCCGCTGGCGGCGGCAACAGGCTC
CTGGCCGGGTACCTCGCTCACGAATTCCTTGCGTGCGGCACGGTCCTGGGTGAAAGGCGTGCGCCCGGCGGGCCGGACAC
GGGTTCCGAGGCGAGTCAGGGCCGGGGGCAGGCCGCGCGCTACGAGGCCGTGGCAGCGCTGGTGCAGGTGGGCGGCGCCT
GCGTTCCCGGGGTGGTGAACCCCTCGCAGCTCGCCGCGTGGGCGACGACACGGTGAGGAGGCCGCGGGGAAGGCGTACAT
GTATGTAAGTGTAGCTAAATCCCTGCCGATCATCCGGAGTCTCATTAGTTAGAGCTTATGCTGACGATATAGGTTGGATG
AGCTTGAGATCTGTACAGCTATGTTCTCAGTGATACCATACGGTTGGAGTACTACATATATGGTAGTAATATTGCCTTGC
TGTGGTTGGTTCTACTA--------------------GTAGTGTCTGATCATGTTGGTGTTCATCGACTACTGCATTGAT
TTTTCTTCT---GATCTAGTGATTCCCGAGGACTGAATCTAGGAAAAT-TAGTGCCACTTGCCTGTTGTAAGTTTCCTAT
AGGTGCGTAATTCTTAGTTGAGGAAAGGCTACTCTTAGGCTGGTCATAGTGGAGAGTAACTTAGACTAGTAACATACATA
TGTTACTAGTCTATGTTACTACCTTCATAGTGGGTAGTGTCATAGGTGTGGTAACATAGTTGCCTTTATTTATTACTTTG
TAGACTCATTATGCATTGGAAACCGCTATGTGATGGTAACATATTATGTTACTCTATTTGCCTCTCTCCTCATTAACTAC
TTGCCACATCACTAATTTTGCTTATGTGGCATCTATGTTACTACCTATGTTACTCCCACTATGACCAGCCTTAGGCCAAA
AACTATTGCAGCAAGCA--CAATCTGAAAACCTCGGATAGGTCATAGGTGATCCCCTATCCATCCACAACTGAGCACAGT
AAT---AACCAGATAAATGTATATGATGGATGTAACCAATGATTACATCTTGAGCATGCGGTTCAGCATACAAAGGGCAC
ACA---TGTTCTACCCTCGCTGCGTGGGAACTGTGGTGCGCCGCAGCCCGTGCCGCTCCATGACCCTTCTCATCGCAAGG
GCAGCCGCATCACCAGCCTGCACAGTCCCTGTCGCCATGATGGCCACAAACTCCTGCTTTAGCTCCTCCTGTGCTCGCCT
CTTCGCCTCTCCGAGGGGGTCTGAAGCTGCTGCCGCTGGCAGAGTCACCTTGGCCACCGTCGCTGCTGGAGCAGCAGGTT
GCACGGCTGGCGGGGTGACCATCCTAGTGCCCTCGTCCACTGTATGGAGCTCAATGCTATTTATGGAGGTCTCTGTCTGC
GTCGCTGCTGCTGGAGCAGCTGGTTTTGCCGGAGGCGGGATGATGCCACCATCACTGTCAACCATTTCATCAGCGCCAGT
TTCATTGGCGGTGACTGATCTTGACTCTATCTG
>chr1D_983
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----------------------GTCACACACCCCATCGAGATGGCGGACAGGGAGGCCCCACCTGGGTCCGGAATCGGGA
GGAAGCGGAGATGCAGGGACGCCGGCGCCGCGGCAGGCCTACCCGACCCGGCCGCCGCCGCTGGCGGCGGCAACAGGCTC
CTGGCCGGGTACCTCGCGCACGAATTCCTTGCGTGCGGCACGGTCCTGGGTGAAAGGCGGGCGCCCGGCGGGCCGGACAC
GGGCTCCGAGGCGAGTCAGGGCCGAGGGCAGGCCGCGCGGTACGAGGCCGTGGCAGCGCTGGTGCAGGTCGGCGGCGCCT
GCGTTCCCGGGGTGGTGAACCCCGCGCAGCTCGCCGCGTGGGCGACGACACGGTGAGGAGGCCGCGGGGAAGGCGTACAT
GTATGTAAGTGTAGCTAAGTCCCTGCTGATCATCTGGAGTCTCATTAGTTAGAGCTTATGCTGACGATGTAGGTTGGATG
AGCATGAGATCTGTACATCTATGTTCTCAACGATGCCATA-------------------------------------TGG
TGTGGTTGGTTCTACTA--------------------CTAGTGTCTGATCATGCTGGTGTTCATCTACTAGTGCATTGGT
TTTTCTTCTTCTGATCCAGTGATTCGCTAGGACTAAATCTAGGAAACACTAGTACCAGTTGCC---TGTAAGTTTCCTAT
AGGCGCTTAATTCTTAGTTGAGGAATGCTAGCATTGCTGCAC--------------------------------------
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------T--------------------------------------------------------------CGTAGGCCAAA
ATATGTTGCAGCAAACAGACAATCTG-----------------ATAGGTGATCCTCTATCCATCCACAACTGAGCACAGT
AATAATAACCAGATAAATGTACTTGATGAATGCAATCAGCAATTACATCTTGAGCACCCTGTTCTGCATACAAAGGACAC
ACACTTTGTTCTACCTTTGTTGCGTGGGAACTGCGGCGCGCCGCAGCCCATGCCGCTCCATGACCCTTCTCATCGCGAGG
GCAGCCGCATCACCAGCCTGCACAGTCCCTGTCGCCATGATGGCCGCAAACTCCTGCTTTAGCTCCTCCTGTGCTCGGCT
CTTCGCCTCTCCGAGGGGATCTGAAGCTGCTGCCGCTGGCAGAGTCACCTTGGCCACCGTCGCTGCTGGAGCAGCTGGTT
GCACGGCTGGCGGGGTGACCATCCTAGTGCCCTCGTCCACTGTCTGGAGCTCAATGCTATTTAGGGAAGGCTCTGTCTGC
GTCGCTGCGGCTGGAGCAGCTGGTTCTGCAGGAGGCGGGATGATGCCACCATCACTGTCAACCATTTCATCAGCGCCAGT
TTCATTGGCGGTGACTGATCTTGATTCTATCTG
>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------S-------------SSSSS--SSSS------S----------------
---S---SSSSSSSS----------------------------------------------------------------S
S------------------------------------------------------S------------------------
---------------------------------S-S-----------------------S-------------SS-----
------S-------------------------------------------------------------------------
S--------------------------------------------------------------------------S----
--S--------------------------------------S--------S----S------------------------
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-----------------SSSSSSSSSSSSSSSSSSSS----------------------------------------S--
------------S-----------------S----------------------------------------------S--
------------------------------SS--SSS-S-SSS-------------------------------------
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--------------------S--SSSSS-SSSS-S-SSSSS--S-S--S-SSS-SSS-SSS--SSSSS--SS-SS-S-SS
SS-SSS-------------------------------------------------------------------S------
----------S----------------------S----------------------------------------------
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-------------------------------------------S------------------------------------
-------------------------------------------------------------S------------------
-------S------------------------------------------------------------------------
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----------------------------------------------------------SS--------------S--S--
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>forward_120
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--------------------AACCTCTTGTGCACAACCCA----------------------------------------
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>reverse_1911
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----------------------------------------------------------------------AGTGCATTGG
AGGAGGTCTT----------------------------------------------------------------------
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