>input_sequence_83140
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---------------------ATGAGCTCCGGCGGCTGTTCGACGTGCCTGGAGACCGTCTTCGCCGCCGTCCTCCCGCC
GCTCGGCGTCTTCTTCCGGTACGGCTGGTGCAGCGTAAGCACCGCTACTCCTTTCTGATCCACTTAGCTCCACACCAGTC
TTGCCTGAGTCCGTCGTAATGATTGATTTGCTGAATTTTGTGCCGCTGATGCGTGCCTAAACATGTGCAGCCGGAGTTCT
TCATCTCGCTGCCGCTGACGTTGCTCGGCTACGTCCCCGGCATCATCTACTCCCTCTATGTCATCCTGAAGGCGCCGCCG
GAGCTGCCGAGCATCGACGGCGACCGCCCCTACTACATCCTCGCCTGA--------------------------------
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---------------------------------------------------
>chr7D_1_TraesCS7D01G491500
CATGGGAACAAAAA----AAAATCCTGAACACTTTTTGAATTTACAGAACAAAAAATTAAAATCAAGGACAATTTGTAAA
ATACTAAACAAA-TTTGAAAATGTGAACAGTTTTTAATAAAATGAAAAAATGGAATCATTTTTGAAAATTTGAATACA--
AAACGTTCTTGAGTTTTAGAAC---TTTTTTAAAATGAAGTAAACAATTTTTGAACTTCTGAACATTCATTGAAATTTGT
GAACCAAATTTGAAAAAGG--AATATTTTTTTGTATTTCTATAGATTTGTTAAAAAATAAAAAGGAAAAGGAAATAAAA-
---AAACAAAGAAAATAAAGAACGAAAAAGGAAAGAAAACTGAACAAAGTATAGAAAAAAAGGAAAATAACG---AAAAA
AACAGAGAAAGACATAAAACCGGTTGACGAATCTTCCCTTACCTTCTAGAAGGTTTCTAACACAAGAAAAATACCGACTA
GAACCTCGTAGAACCTTCCCAAACCCGCCCAGTACTGTAGCACATAC----CTAATAATTGGGCCGGGCCATGTTGATGG
CTGGTCGCTCCCTTCTGTGTGAAGTGTCTGACAATCTGCCGCAT--TGCGGCAGATAGGACTTTCCGATTCATCGGCATC
TCCGGCCAATAA--------------------------------------------------------------------
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-----------------------------------------AAAAAACAGCTACTCCTT----TCAAAATCCGCATCTAG
ACAAATCTAAGAAAAAACTTTTTGGGCCGGAGGTAATATTTACGAGGAAGTGGAATATTCTTGGCCATAAATTCGCACAC
AGCTACCTGCGGTCGCCGTGGCGGCAAGGAACGGTCCCTCCGGTCAGTCTGCGACACCAAGAGGCTCACGGGTAATCGGC
ATATTCTTCCCACAGCCATCGTCCGGTTCCGCATCATTCCCGTCGGCATCGGTATTTGCTTGCTGGCGGCTGCCACCTCT
GGTTTAAAAGCTCCGACGACTTTGCTAAACTGAACCGAGCTTGCTTCTG---CCGCCAGAGTTAGTTTTGTAAAGCCTGG
GCAAGGGCAGGGCCGGGTAGGATGAGCTCCGGCGGCTGTTCGACGTGCCTGGAGACCGTCTTCGCCGCCGTCCTCCCGCC
GCTCGGCGTCTTCTTCCGGTACGGCTGGTGCAGCGTAAGCACCGCTACTCCTTTCTGATCCACTTAGCTCCACACCAGTC
TTGCCTGAGTCCGTCGTAATGATTGATTTGCTGAATTTTGTGCCGCTGATGCGTGCCTAAACATGTGCAGCCGGAGTTCT
TCATCTCGCTGCCGCTGACGTTGCTCGGCTACGTCCCCGGCATCATCTACTCCCTCTATGTCATCCTGAAGGCGCCGCCG
GAGCTGCCGAGCATCGACGGCGACCGCCCCTACTACATCCTCGCCTGAGAAGCTCCTTCGAGCATAGCGTACGTACATGC
TACTGTAGTTTAGCTCGCTCGCTGCATACTGTGTCGCCATTGGTTGAATTGGAGATGATTTGTAATTAAGCTGTGTGTTA
GTGTGTGGACGTAGCCAGTGCTTTGAGGAATTAGCCACTGTTCTTTCTTTCTTGATTGGATTGGTGATGTGCTGTATAAT
TGTTTCGGCTGTGGATTAACGTACTCTCGATGCTAGAAATTAACAGCTAGTACT--------------------------
-----------------ATAGTTTGCAATGGATGGGTGTGAATCACGTTCTCAGTTTTAGATGCGTCGATATGTAAACAG
TTACTGAACTAGTGAATTTTGTTCCGGTCTCTATTTGAATCGACGAACTCTTGCGGGAGTTCAGGGTTCTGATCAGAGTT
AAAAGGTGACCTGGACAAGTAGTGTAATCCAATGCTGAGTCACATCAATTAATTATTAATTTTGAATGGCTTTAAGGGCA
AACTGGTGTACTATATCTTTTTGGGAGAGAGAGTGCTTTCAGACAATTTTGAGAAAAAGATTTATTCTCTTTGTCCCTAT
TTACTAGTGTCGATGTATTTCGAGATTCAATTTTAACGAACAAAAGGTGGTTTGTGTGTTACAAAATTATACTATCATTC
AATCCATATTTAGATCTGCCCACCTCCCCGCTCCCCCGCTCCCGTCGCCCCCTCGGCGACGGCGCACATCTCCCATGGCG
GATCCGTCCCCCTCGCCCATGCCGTCAACTGCGAGCCCTGCCTCGTACAGGGAGGCCCTGCATGCTTGCCTCGGCCCCGC
CGTCTAGGCACGTCACACAATCGAGTTTCGTGGATCCCTCGTGTCCGCGGCTCAGATCCGTCATCATTGTCCCTGATAAG
GTGGATGGGCGCATTGATGGCATTGATGAGGGCGATGGTGGTGGGTGGATGCAGGTGCATGGCAAGGACAAGTGCAAGAA
CCAGGAGCCCAAGCCCTGATCCCAGGAGGGGGACAACCGATTCGACGAGCT
>chr7B_1
CATGGGAACAAGAAATTGAATATCCCGAGCATTTTTTGAATCTACAGAACAAAACATTAAAATCAAGAACAATTTGAAAA
ATCCTAAACAAAATTTGAAAATGATCATAGTTTTTAATAGAATTAAAT-ATGGAATTAGTGTAAAAAATTTGAAAATTTC
AAATGTTTTCAAGTTTTAGAACAGTTTTTTTAAAATGAAGTAAACAATATTTGAACTTCTGGACATTTATTGAAATTTGT
GAACCAAATTTGAAAAAATGAAATAATTTTTTGTATTTCTAAATATTTGTT-AAAAATAAAAAGGAAAAGGAAAGAAACA
AAGAAACAAAGAAAATAAAAAACGAAAAAGGAAAGAAAACTGAAAGAAGTATGGAAAAACCAGGAAAGTAACATAAAAGA
AACAGAGAGAAACATAAAACTGGTTCACGAACCTTTCCTTACCTTCTAGAAGGTTCCTAACACGAGAAAAA--CCGACTG
GAACCTCACAGAACCTTTCCAAAACCGCCCTGCACTGTAGCACATACTTTGCTAATAATTGGGCCGGCCCATGTTGATTG
CTGGTCACTCCCCTCTGCGAAGTGTA---GACAGTCTGCCGCAAAATGCGGCAGATAGGATTTGCCGATACATCGGCATC
TCCGGCCAAACAAAAAACAGCGAAATCACTAGTTAAGGAGTATTCATTGTGAAGATCATTCCAATTTTTCAGGTTGTGAC
AAGTGGCGCGCTGCACGTGCGCCACTTATCGCAACCTGGGAATTTTCCCTTTTTTCGTAGATCCATTTATTCAAAACGTT
TTATCTCTTAAACCGTGCGTCCAAATCTCGAACCGCTTTCGCCGTTAGATTCCTCGCGTCGAGATCTTCAAAACTGGATC
CCATGTTGATAGTTTTTGACGATTTTTTTCACGAAAAAAACCAAAAAACTGGACGAAAAAACCGAACCGGGAGCACGGGT
TGTTCCCTTTCCGAAAGAGGCACGCCCGTGCCTCTGACGAAATCACAACCGTGCCTCTCGCGGAAGCAAAACCGTGACTC
TCGCAAAAATAAAATAAAATAGAAAACGCATTTTTTCCATTTTCGAGGAGGCACGACCGTGACTCTCGCGAAAGCACAAT
CGTGCCTTTCGCAGAAACAAAACCGTGACTCTCGCGAAAAAAAATGCGTTTTTTTCGTTTTCAAGAGGCACGGCCGTGAC
TCTCGCGAAAGCACAACCGTTTCTCTCGCGGAATAAAATTCGTGACTTTCGCGAAAGGAAAAAAAAACAAAAAACGCATT
TTTTTTCGTTTCCAAGATGCACGGCCGTGTCCCTCGCGAAAGCACAACCTTGCCTCTCACGGAAACAAAACCCTGACTCT
CGCGAAAGGAAAAAGAAAAAGAAAACACGTTTTTTTGCGCAATTTTTTTTTTTGAAAATTGTGTTTTGGTTGAAAAGCTA
GGGAAGACCGGTGGAAACCAAAACATTGAAAAATCAGGGGGAAAACCATTTAAAAAGACGAAAACGCGTGCGAAAAAACA
AAAAAAAAATCCGGAGGGAGCGCCCAGAGCGCAACACGTGGCGAATGGCTGAGAGCGCGCAAGTGACGTTGATCGTTGTG
AGGCTCCCGAAGGAGCGCTCGTTAGTTAATTAGTTGCTCCCAAAAAACCGCTATCCCTCCATCTCAAAATCTGCATCTAG
ATAAATCTAAGAAAAAACTATTTGAGCCTGAGGTAATATATACGAGGAAGTGGAATATT-----CCATAAATTCGCACAC
AGCTACGTGCGGCCGCCGTGACGGCAAGGAACGGTCCCTCCGGTCAGTCAGCGACCCCAAGAGGCTCGCGGGTAATCGGC
ATATTCTTCCCACAGCCATCGTCCGGTTCCGCATCATTCCCGTCGGCATCGGCATTTGCTTGCTAGCGGCTGCCTCCTCT
GGTTTAAA-GCTCGGAAGACTTTGCTGAACTGAACCGAGCTTGCTTCTG---CCGCCAGAGTTAGTTTTGCAAAGCCTGG
GCAGGGGCAGGGCCGGGCAGGATGAGCTCCGGCGGCTGTTCGACGTGCCTGGAGACCGTCTTCGCCGCCGTCCTCCCGCC
GCTCGGCGTCTTCTTCCGGTACGGCTGGTGCAGCGTAAGCACTGATGCTCCTTTCTGATCCACTTAACTCCACACCAGTT
TTGCCTGAGTACGTCGTAATGATTGATTTGCTGAACTTTGTGCTGCTGACGC------------GTGCAGTCGGAGTTCT
TCATCTCGCTGCCGCTGACCTTGCTCGGCTACGTTCCCGGTGTCATCTACTCCCTCTATGTCATCCTGAAGACGCCGCCG
GAGCTGCCGAGCATCGACGGCGACCGCCCCTACTACATCCTCGCCTGAGAAGCTCCTTCCAGCATAGCGTGCGTACATGC
TACTGTAGTTTAGCTCGCTCGCTGCATACTGTGTCGCCATTGGTTGAATTGGAGATGATTTGTAGTTAAGCTGTGTGTTA
CTTAGTGT--GTAGCCGTACCT---AGGAATTAGCCTCTGTTCTTTCTTTCTTGATTGGATTGGTGGTGTGCTGTATAAT
TGGTTCGGCTGTT----------------------GAAATTAACAGCTACACTCTCCGTCCCATAACGTATGACGTTTTT
TGACACTACTAAGACTAATAGTTTGCAATGGATGGGTGTGAATCACGTTCGATGTGTACAAAGTGAAAC-----AAATAG
TTATTGAACT--------TTGTTCCGGTCTCTATTTGAATCGACGAACTCTTGTGGGAGTTCCGG---------------
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>chr7A_690
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---------------------------CGGAGGGAGTATTTACGAGGAAGAGGAATATTCTGGGCCATAAATTCGCACAC
AGCTACCTGCGGTCGCCGTGACGGCAAGGAACGGCCCCTCCGGTCAGCCAGCGACACCAAGAGGCTCGCGGGTAATCGGC
ATATTCTTCCCACAGCCATCATCCGGTTCCGCATCATTCCCGTCGGCATCGGTATTTGCTTGCTGGCGGCTGCCTCCTCT
GGTTTAAA-GCTCCGACGACTTTGCTAAACCGAACTGCGCTTGCTTCTGCCGCCGCCAGAGTTAGTTTTGTAAAGCCTGG
GCAAGGGCAGGGCCGGGCAGGATGAGCTCCGGCGGCTGTTCGACGTGCCTGGAGAC-------GCCGCCGTCCTCCCGCC
GCCCGGCGTCTTCTTCCGGTACGGCTGGTGCAGCGTAAGCACTGCTACCCCTTTATGATCCACTTAACGCCACACTAGTC
TTGCCTGAGTACGTCGCAATGATTGATTTGCTGAACTTTGTGCTGCTGATGCGTGCCTAAACATGTGCAGCCGGAGTTCT
TCATCTCGCTGCCGCTAACGTTGCTCGGCTACGTCCCTGGCATCGTCTACTCCCTCTATGTCATCCTGAAGACGCCGCCG
GAGCTGCCGAGCATCGACGGCGACCGTCCCTACTACATCCTCGCCTGACAAGCTCCTTCGAGCATAGCGTGCGTACATGC
TACTGTAATTTA----GCTCGCTGCATACTGTGTCGCCATTGGTTGAATTGGAGATGGTTTGTAATTAAGCGGTGTGTTA
ATTAGTGT--GTAGCTAGTGGTTTGAGGAATTAGCCAATGTTCTTTCTTTCTCGATTGGATTGGTGCTGTGCTGT-----
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---------------------------------------------------
>SNPs
-----------S--------S----S--S--S---------S------------S------------S--------S---
--S--------------------SSS-S-----------S---S---SS-------S-S-S-SS----------S-SS--
---S---S-SS-------------------------------------S------------S-----S------------
-----------------SS------S---------------S-S-------S----------------------S---S-
-------------------S------------------------SS------S------SSS-S---SS-SS------S-
--------S-S---------S----S-----S---S-------------------S-------S-------SS------S
-------SS--------S-----S------S-S----------------------------------S----------S-
------S-----S----S-SSSS--SSSS----S---------S----------------S--S-----S----------
---------SS---------------------------------------------------------------------
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------------------------------------------------S----SS---S------------S--------
-S-----------------S----S------------------------------------S------------------
--------------------S----------------------------S-----------------S------------
--------------------------------------------------------------------------S-----
--------S-----------------------------------------------------------------------
-----------------S--------------------------------------------------------------
------------------------------------------S-----------------------S-------------
----------S------------------------S-------S------------------------------------
-----------------------------------------------------------------------S--------
----------------------------------------------------------------------S---------
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S-SS---SSS--------------------------------------------------------S-------------
--S---------SSSSSSSSSSSSSSSSSSSSSSS--------------SSSSS--------------------------
--------------------------------------------------SSS--S-SSS-S-S-SSSSSSSSS---S--
---S------SSSSSSSS-----------------------------------S--------S--SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_583
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---GTCGCTCCCTTCTGTGTGAA---------------------------------------------------------
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>reverse_3288
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-------GGCGCATTGATGGCATTGAT-----------------------------------------------------
---------------------------------------------------
