>input_sequence_83137
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-------------------------------------------------------ATGGGTGTGTCCCCAGAAGGGAGGA
GGCTCCGTGAGGAGGT-GGGCAGCGAGGTTGCTCACCTTCAGTCGGGGACCCCGACGATGGCCGGTGGGATCAGAGGTAG
GCGGCAGCGCCGACACCTGGATCCACGGCTTTCTCGTCTTCAGTCGGGGACCCTGGCGGCGGCGGGCGCGACCTAATTAC
AGGAGGCGTCGCTTGGTATAATCCACGGCCGGCGGCGGCGCCCAGGACCAAGGTGGATCGGGCCAGAGGTGGTGTTACAT
GGCGGCGGTTAGAAGAAGGTGGGGCGATTGTGGGGGCCTGGTGTGGCGGCAGGAGGAACGTGGTGGGTGGTGGCGGGGAG
TGA-----------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G206400
GAACTTCTGAATAGCATTTTACAAGCTTGAGGCCATCAGGTTTCAGTGCCCGAACATTTAGTTATCTGAGCTCTGAAGAA
TAATACTCCGGTTATAGCGGAACTTCTCTCATTCATCCATGCGTTATGTTGTAGAACATTTTTTTTTGCCCCGGATAGGG
ACTACGGCGTGCGGTCCTGGCAACAGTAGGCCATGGCGGTGTGTGGTGGCATGATGCGTCGCGGTGGCGTGTGTTGACGG
T-----GACCAGACCAGGAGCGGTTGCGGTTCGATGGATGGACAGGTCCCTGCATGGTTAATTTCCAGTAACAAAACAGC
CTGCATGACCCGTTGCCATGAGAGAAAACTTCTTCTTACTAATGCCAAAGCAATTTTTATGCAAAACAAAACATTTCCAA
AAATAGCAAAGCTGTAGAAGTGGTAAAATTACTTCAGAAACTATCACAATTGTACCAATAAAGCGGTGTCAAGTGTATTT
TCTTAAAAGCTTGAGCTATTGGAGCTCGTGGATGAGGTTGTGGTGTCTTCTAGGAAGC-AAGCAAAAA--AGCCTGAAAC
TAGCACACATGCAAGCAACTTGATTGATGAACAGTATCACATGTGCGTACTGCTAGCTAGCCAAGAAATCGATTAAGCTA
CTTGGCTTCTTGGTTAAGGCTTGACTTTGCACATACCCGTTGCTCCGTGGTGGTTTGATCAAGCGTTCCAAAATCAACAC
TCGTGTAGGCGGAGCCCGTAGAGGCAACTTTCCGGAGCTGAAGTAGTCGGAGCAGTCCATGTTGGCGACTGGGTGCAGTC
-----CGGCGGCCGAGCGCACGGCGGTGAGCAGGAGGGAGGAC-GGGGGCAGTTCTTTAGGGCAGAGGAGGTGATGCAGG
GGGCGGTGAGGTGTGGAG-TTTGGCTGATATCCCTGGATGGCTGGGCTTTCGGCGCTGAAGCGGTGAACATCTGAGAGCT
CCGTGTGGTTGAACGGCCGGAGCTAGTCGTGGTGAACAGCCTGAGCGCCACGGCGATGGGTGTGTCCCCAGAAGGGAGGA
GGCTCCGTGAGGAGGT-GGGCAGCGAGGTTGCTCACCTTCAGTCGGGGACCCCGACGATGGCCGGTGGGATCAGAGGTAG
GCGGCAGCGCCGACACCTGGATCCACGGCTTTCTCGTCTTCAGTCGGGGACCCTGGCGGCGGCGGGCGCGACCTAATTAC
AGGAGGCGTCGCTTGGTATAATCCACGGCCGGCGGCGGCGCCCAGGACCAAGGTGGATCGGGCCAGAGGTGGTGTTACAT
GGCGGCGGTTAGAAGAAGGTGGGGCGATTGTGGGGGCCTGGTGTGGCGGCAGGAGGAACGTGGTGGGTGGTGGCGGGGAG
TGATGTTGGGGCGGCGCAGGGTGGGCGGCGCGGTGGCGGCGGCGTCGTTGGGGCGGGGTGCGGGCGGCGCGGGGCAGGCT
CAGGCTTTTTTAAATGGGTCCAGGAAAACCTCATCGGACGCTGAAAGCAAATCAGTCCAAAAGATCATTAAAA--GTGAA
GGATAAGGAGGGCGGTGGCCGTTGTATCAGAAGTTGAAAGCATACTAGTAGTACTATTGCACGGAAAAACCAGAGAAGAT
GTATTTATCCACTATCAGCATCCGGATCATGGCAGGCGCTGTCTCCGCTGTCGCGTCGAGCTGCTGTGGTTCAAGCCGCC
GCCCGCGACTTAGTTCTGAGTCTCCCAGCCTCACATCAAAGTGTTCAGCTGATTTCTATTGTGGGGATATCAAGA-TTTT
TAAATAGAACCGGTGTT-AAAAATGGAGCTACGGCAAACCTCTGCAACCGATGATTATCAGAGTATTATGTATACACCCG
ATGGGCTATATTATTGTTAGCTTATTGACGGGTATTACATATGGATCTTCCGACGTTCGGACAAATCAGGTGATATCCAT
CTAAATCTAGTTTCTTGGTATATATTG--TTTTTATCAAGGGAACAATTACTTTGGACCGTATATTTTGATATGCAGGAC
AATTATTCATTATAAACGTGGTTTATACCATGGGTATGGAGCACGCGCTGGCAACGTCCTGCCCGGTGTTCGTCCGTGCC
ACATTACATGGTGAATGGACGCGTGCAAGACGCTGCCCTTACGACCCTGTTTACATCAGCTTGCTGGGACCGCGGCTGTG
ATTGACTCGCCCGTCCGTACTGGCTTACAACGCCGTGACCGACTCATCTGCTCTTGCCGTCTCTGATACGGTGGACGTCT
TTACCATCCGTCTCTCGCGATTCGGTCTACATCAACACACCGGGCCGCACCTATCTGCATGAGCTGTTTATTGAGTATAA
AGCCAGTCACTGCTTGGGTAGCCCGGTTCTCTTTCAATAACTCTGGAGC
>chr5D_1
GAACTTCTGAATAGCGTTTTACAAGATTGAGGCCATCAAGTCTCAGTGCCCGAACATTTAGTTATCTGAGCTCTGAAGAA
TACTACTCCGGTTATAGCGGAACTTCTCTCATTCATCCATGCGTTATTTTGCAGAACA--TTTTTTTGCCCCAGCTAGGG
ACTACGGCGTGCGGTCCTGGCAACAGTAGGCCATGGCGGTGCGTGGTGGCATGACACGTCGCAGCGGCGTGTGTTGACGG
C-----GACCAGACCAGGCGCGGTTGCGGTTCGATGGATGGACAGATCCCTGCATGGTTCCTTGCCAGTAACAAAACAGC
CTGCATGACCCCTTGCCATCAGAGAAAACTTCTTCTTACTAATGCCAAAGCAATTGTTATGCAAAACAAAACATTTCCAA
AAATAGCAAAGCTATAGAAGTGGTAAAATTACTTCAGAAACTATCACAATTGTACCAATAAAGCTGTGTCAAGTGTATTT
TCTTAAAAGCTTGAGCTATTGGAACTTGTGGATGAGGTTGTGGTGTCTTCTCTGAATC-AAGCAAAAAATAGCCTGAAAC
TAGCACACATGCAAGCAACTTGATTGATGAACAGTATCACATGCGCGCACTGCTAGCTAGCCAAGAAATCGATTAAGCTA
CTTGGCTGCTTGGTTAAGGCTTAACTTTGCACATACCCGTTGCTCCGTGGTGGTTTGATCAAGCGTTCCAAAATCAACAC
TCGC-TAGGCGGAGCCCGTAGAGGCAATTTTCCGGAGCTGAAGTAGTCGGAGCAGTTCGTGTTGGCGACTGGGTGCAGTC
T-----GGCGGCCGAGCGCACGGCTGTGAGCAGGAAGGAGGAC-G-GGGCAGTTCTTCAGGGCAGAGGAGGTGATGCAGG
GGGCGGCGAGGTGTGGAG-TTTGGCTGATATCCCTGGATGGCTGGGCTTTGGGCGCTAAAGCGGTGAACATCCGAGAGCT
CCGTGTGGTTGAACGGCCGGAGCTGGTCGTGGCGAACGGCCTGAGCACCACGCCGATGGGTGTGTCCCCACAAGGGAGGA
GGCTCCGTGAGGAGGT-GGGCAGCGAGGTTGCTCACCTTCAGTCGGGGACCCCGGCGATGGCCGGTGGGATCAGAGGGAG
GCGGCAGCGCCTG-----GGATTCACGGCTTGCTCGTCTTCAGTCGGGGACCCCGGCGACGGCGGGTGCCATCTAAAGAC
AGGAGGCGTCGCTCGGTAT---CCACGGCCGGCGGCGGCGCACAGGACCAAGGTGGATCGGGGCAGAGGTGGTGTTCCAT
GGCGGCGGTTAGAAGAAGGTGGGGCGATTGTGGGGGCCTGGTGTGGCGGCAGGAGGAAGGTGGTGGGTGGTGGCGGGGAA
TGATGTTGGGGCCGCGCGGGGTGGGCGGCACGGTGG--------------------------------------------
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>chr4A_1
GAACTTCTGAATGTCGTTTTGCAAGCTTGAGGCCATCAGGTTTCAGTGCCCGGACATTTAGTTATCTGAGCTCTCAAGAA
TACTACTCCGGTTATAACGGAACTTCTCTCATTCATCCGTGCATTATTTTGCAGAACA--TTTTTTGCGCCG-GCTAGGG
ACTACGGCGTGCGGCCCTAGCAGCAGTAGGCCATGGTGGTGCATGCTGGCATGACACGTCGCAGCGGCGTGTGTTGACGG
CCAGGTGACCAGACCAGGTGCGGTTGCGGTTCGGTGGATGGACAGGTCCCTGCATGGTTCCTTGCCAGTAACAAAACAGC
CTGCATGACCGCTTGCCACCAGAGAAAACTTCTTCTTACTAATGTCAAATTAATTGATATGCAAAACAAAACATTGCCAA
AA-TAGCATAGCTACAGAGGTGATAAAATCACTTCAGAAAATATCACAATTGTACC-ATAAAGCTGCGTCAAGTGTATTT
TCTTAAAAGCTTGAGCTATTGGAACTCGTGGATGAGGTTGTGGTGTCTTCTCTGAAGCAAAGCAAAAAATAGCCTGAAAC
TAGCACACATACAAGCAACTTGATTGATGAACAGTATCACATGCGTGTACTGCTAGCAAGCCAAGAAATCGATTAAGCTA
CTTGGCTGCTTGTTTAAGGCTGGCCTTTGCACAAACTCGTTGCTCCATGGTGGTTTGAGCAAGTGTTCCAAAATCAACAC
TCGCGTAGGCGGAGCCCGTGGAGCCAACTTTCCGGAGCTAAAGTAGTCGGAGCAGTCCGTGTTGGCGACTGGGTGCAGTC
CGTGCCGGCGGCCGGGTGCACAGCGGTGAGCAGGAGGGAGGTT---GGGCACATCTTTAGGGCGGAGGAGGTGATGCTGG
GG-CGGCGAGCTGGGGAGTTTTGGCGGAGATCCTCGGATGGCTGGAGTTTGGGCGCTGAAGCGGTGAACATCCGAGAGCT
CTA--TGGTGGAACGGCCTGAGCTGGTCGTGGTGAACGGCCTGAGCGCCACGGTGATGGGTGTGTCCCCACAAGGGAGGA
GGCTCCGTGAGGAGGTGGGGTAGCGAGGTTGCTCACCTTTAGTCGGGGACCCCGGTGGCGGCCGGCGGGATCAGAGGTAG
GAGACGGTGCCTG-----GGATGCACGGCTTGCTCGTCTTCACTCGGGGACCCCTGCGGCGGAGGTCGCGATCCAAAGAC
AGGAGGCGTCGCCCGGGAT---CCACGGCCGACGGCGGCGCACAGGACCAAGGTGGATCGGGGCAGAGGTGGTGTTCCAT
GGCGGCGGTTAGAAGAAGGTGGGGCGATTGTGGGAGCCTAGTGTGGCGGCGGGAGGAAGGTGGTGGGTTGTGGCGAGGAA
GGATGTTGTGGCCCCGCGGGGTGGGCGGTGGGCGGCGG------------------------------------------
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>chr1B_324
CC------------------------------------------------------------------------------
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-----------CTTGCCATTAGATAAAACTTCTTCTTACTAATGCCAAAGCAATTGTTATG--AAAAAAAACACTTCCAA
AAATAGCAAAGCTATGGAAGTGGTAAAATTACTTCAAAAACTATCACAATTGTACCAATAAAGCTATGTCAAGTGTATTT
TCTTAAAAGCTTGAGCTATTGGAACTCGTGGATGAGGTTGTGGTGTCTTCTTGGAAGC-AAGCAAAAAATAGCCTAAAAC
TAGCACACATGCAAGCAATTTGATTGATGAACAGTATCACATGCGCGTACTAGTAGCTAGCTAAGAAATTGATTAAGCTA
CTTGGCTGCTTGGTTAAGTCTTAACTTTGCACATACCCGTTGCTACATGGTGGTTTGATCAAGTGTTCCAAAATCAACAC
TTGCGTAGGAGGAGCCCGTAGAGGCAACTTTCCGGAGCTGAAGTAGTCGGAGCAGTCCGTGTTGGTGACTAGGTGCAGTC
-----CGGCGGCCGAGCGCACGGTGGTGAGTACGAGGGAGGACGG-GGGCAGTTCTTCAGGGTGGAGAAGGTGATGTAGG
GGGCGGCGAGGTGTGGAG-TTTGGCTGATATCCATGGATGGCTGGGCTTTGGGCGCTGAAGCGGTGAACATCCGAGAGAT
CCGTGTGGTTGAACGGCCGGAGCTGGTCGTGGTGAACGTCCTGAGTGCCACGGCGATGGGTGTGTCCCCACAAGGGAGGA
GGCTCCATGGGGAGGT-GGGCAGCGAGGTTGCTCACCTTCCGTCGTGGACCCCAGCGATGGCCGGTGGGATCAGAGGTAG
GCGGCGGCGCCTG-----GAATCCATGACTTGCTCGTCTTCAGTCGGGGACCCCGGCGGCGGCGGGCGCGATCTAAAGAC
AGCAGGCGTCGCTCGGTAT---CCACGGTC-GCGGCAGCACACAGGACCAAGGTGGATCGGGGTAGAGGTGGTTTTCCAT
GGCGGCGGTTAGAAGAAGGTGGAACGATTGTGGGGGCCTGGTGTGGCGGCAGGAGGAAGGTGGTGGGTGGTGGCGGGGAA
TGATGTTGGGGC--------------------------------------------------------------------
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>chr6D_1466
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-----------------------------------------TGAAAGCAAATCAGTCCAAAAGCTCATTAAAAAAGTGAA
GGATAAGGAGGGCGGTGGCCGTTGTATCAGAAGTTAAAAG----CTACAAGTACTATTGCATGGAAAAGCAAGAGGAGAT
GTATTTATCCACTATCAGCATCTGGGTCATGCCAGGCGCTGCCTCCGCCGTCACGTCAAGCTGCTGTGGCTCAAGCCGCC
GCCCGCGACTCAGCTC-GAGTCTCCCAGCCTCACGTCAAAGTGTTCAGCTGATTGCTATCGTGGGGATATCAAGA-TTTT
TAAATAGAACTGGTGTT-AAAAAAGGAGCTACGGCAA-CCTCTGCAATAGCTGATCATCAGAGTATTATGTATACACCCG
ATGGACTATACTATTGTCAGTTTATTGACGGATATTACATACGGATCTTCCGACGTCCGGACAAATCAAGTGATATCCAT
CTAAATCTATTTTCTTGGTATATACTGTTTTTTTATCAAGGGAACAATTACTTTGGTCCGTATATTTTGATATGCAGGAC
AATTATTCATTACAAACGTGGTTTATACCATGGGTACGGAGCACGCGC----AATGTCCTGCCCGTTGTTCGTCCGTGCC
ACATTACACGGTGAATGGACGCGTGCAAGACGCCGCCCTTACGGCCCGGTTTACATCAACTTGCCGGGACCGCGCCTGCG
ATTGACTCGCTCGTCTGTACTGGCTTACAACGCCGTGACCGACTCATCTGCTCTTGCCGCCTCTGATACGGTGGACGTCT
TTACCGTCCGTCTCTCGTCATCCGGTCTACATCAACACACCGTGCCGCACGTGTGTGCACAAGCTGCTTAATGAG-----
-------------------------------------------------
>chr3D_1567
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----------------------------------------------------------------AAAAGCCAGAGGAGAT
GTATTTATACACTATCAGCATTCGGATCATGCCAGGCGCTGCCTCCGCCGTCGCGTCAAGCTGTTGTGGTTCAAACCGCC
GCCCGCGACTCAGCTCTGAGTCTCCCAGCCTCATGTCAAAGTGTTCAGTTGATTGCTATTGTGGGGATATCAAGA-TTTT
TAAATGGAACTGGTGTT-AAAAAAGGAGCTACGGCAAACCTCTGCAACCACTTATCATCAGAGTATTATGTATACACCCT
ATGGGCTATACTATTGTTAGCTTATTGACGGATATTACATATGGATCTTCCAACGTCCGGACAAATCAGGTGATATCCAT
CTAAATTTAGTTTCTTGGTATATATTG--TTTTTATCAAGGGAACAATTACTTTGGACCGTATATTTTGATATGCAGGAC
AATTATTCATTATAAACGTGGTTTATACCATGGGTACGGAGCACGCGCTGGCAACGTCCTGCCCGATGTTCGTCCGTGCC
ACGTTACACGGTCAATGGACGCGTGCAAGACGCCGCCCTTACGGCCCGGTTTACATCAGCTTGCCGGGACCGCGACTGCG
TTTGACTCACCCGTCCGAACTGGCTTACAACGCCATGGCCGACTCATCTATCTGTGCCAGCTCTGATGCTGTGGTCGTCT
TTACTGTCCGTCTCTCGCGGCCTGGTCTACATCAACGTACCGGGCCGCACCTGTCTGCATGAGCTGTTTATTGAGTATG-
AGCAAGTCACAGCTTGGGTAGCCCAGTTTTCTTTCAACAA---------
>chr5B_1572
CCA-----------------------------------------------------------------------------
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-------------------------------------------------------------------------AGGAGAA
GTATTTATCCATTATCAGCATCCGGATCATGCCAGGCGCTGCCTCTGCTGTCGCGTCAAGCTGTTGTGGTTCAAGCCGCC
GCCCGCGACTCAGCTCTGATTCTCCCAGCCTCACGTCAAAGTGTTCAGCTGATTGCTATTGTGGGGATATCAAGACTTTT
TAAATAGAACTGGTGTT-AATAAAGGAGCTACGGCAAACCTCTGCAACCGCTGATCATTAGAGTATTATGTATACACCCG
ATCGGCTATACTATTGTTAGCTTCTTGACGGATATTACATATGGATCTTCCGACGTCCAGACAAATCAGGTGATATTCAT
CTAAATCAAGTTTCTTGGTATATATTG--TTTTTATCAAGGAAACAATTACTTTGGACCGTATATTTAGATATGCAGGAT
AATTATTCATTATAAACGTGCTTTATATCATAGGTACAGAGCATGCGCTGGCAACGTCCTGCCCGGTGTTCGTCTGTGCC
ACATTACCCGGTAAATAAATGCGTGCAAGACGCCGCCCTTACGGCCCGGTTTACATTAGCTTGCCGGGACCGCGCCTGTG
TTTGACTCGCCCGTCCAAACCGGCTTACAATGCCATGATCGACTCATTTGTCTGTGCCGCCTCTGATGTTGCGGTCGTCT
TTACCGTCCGTCTCTCGCGGCCTGGTCTACATCAACGTACCGGGCTGCACCTGTCTGCATGAGTTGTTTATTGAGTGTAA
GGCCAGTCACTTCTTGGGTAGCCCGGTTTTCCTCCAACAAATTGGA---
>chr7D_1573
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----------------------------------------------------------------------CAGAGGAGAT
GTATTTATCTACTATCAGCATCCGGATCATGCCAGGCGCTGCCTCCGCCGTCGCGTCAAGCTGCTGTGGTTCAAGCCGCC
GCCCACGACTCAGCTCTGAGTCTCCCAGCCTCACGTCAAAGTGTTCAGCTGATTGCTATTGTGGGGATATCAAGA-TTTT
TAA-TAGAACTGGTGTTAAAAAAAGGAGCTACGGCAAACCTCTGCAACCGCTGATCATCAGAGTATTATGTATACACCCG
ATGGGCTATACTATTGTTAGCTTATTGATGGATATTACATACGGATCTTCCGACGTCCGGACAAATCAGGTGATATCCAT
CTAAATCTAGTTTCTTGGTATATATTG--TTTTTATCAAGGGAACAATTACTTTGGACCGTATATTTTGATATGCATGAC
AATTATTCATTATAAACGTGGTTTATACCATGGGTACGGAGCACGCGCTGGCAACGTCCTGCCCGGTGTTCGTCCGTGCC
ACAGTACACGGTGAATGGACGCGTGCAAGACGCCGCCCTTACCGCCCGGTTTACATCAGCTTGCTGGGACCGCGCCTGCG
TTTGACTCGCCCGTCTGGACCGGTTTACAACGCCGCGGCCGACTCATCTGTCTGTGCCGCCTCTGATGCTGCGGTCATAT
TTTCCGTCCGTCTCTTGCGGCCTAGTCTACATCAACACGCCAGGCCGCACCTGTCTACATGAGCTGTTTATTGCGTATG-
AGCAAGTCACAGCTTGGGTAGCCCGGTTTTCTTTCAACAA---------
>SNPs
---------------S----------------------------------------------------------------
--S--------------------------------------------S---S------SS------------S-S-----
-----------------------------------------S------------SS------S-S---------------
S-----------------S----------------------------------------SS--S----------------
-----------S-------S-----------------------------------S------------------------
-------------S--------------------------------------------------S---------------
-----------------------S---------------------------S----------------------------
-------------------------------------------S------------------------------------
-------S------------------------------------------------------------------------
---S------------------------------------------------------S---------------------
---------------------------------------------S----------------------------------
------S-------------------------------------------S---------------------S-------
------------------------S------------S--------------------------------S---------
------------------------------------------------------S-------------------------
-----------SSSSSSS-------------S---------------------S-----------------S----SS--
-------------S-----SSS-------------------S--------------------S-------------S---
----------------------------------------------------------S--------------------S
------------S----S------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------S----------------
-----------------------------------S----SSSS---SS------------S------S------S----
-------------------------------S---------S---------------S----------------------
----------S--S--------------------S-------------------S-------------------------
----------S------------S--------------------------S----S------------------------
----------S--------------------S------------------------S-----------------------
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------------------------------------S-------------------------------------------
--------S------------------------S---------S---S--------------------------S-----
-----------------------------------------------------------S--------------------
-----S---------------S------------------------------S---------------------------
----------------------------S--------S--S-SS-SSSS
>forward_998
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------------------GGAGCTAGTCGTGGTGAACA------------------------------------------
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>reverse_2114
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---------------------------------TGCCCTTACGACCCTGTTTAC--------------------------
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