>input_sequence_83130
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------------------------------------------------------------ATGAAATTTGAGCCTAGTCC
AAAAGATCTTGCAATCCTGCTAGCAAATAGGAGCTTCTGCTTGTTGCGCCTGGGAAGAGGAAAAGATGCTCTCTCTGATG
CTGATGCGTGCACAATGGTTAGACCTCGTTGGCCGAAAGGCTACTACCGAAAAGGCGCGGCTTTAATGTTGCAGGAGGTA
ACAAAAATTAGGAACATAATAGTAACACCCAATCTTTCATAGCCATGGTCGGAATTGATCAGCTGCTTGGTGTCTATTTA
CAGGACTATGAAAAGGCATCCGAGGCTTTTGAAGATGGCTTGAAGCTGGATCCTACAAATGCTGATATAGCAAATGCTTT
AAGGTAA-------------------------------------------------------------------------
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------------
>chr2D_1_TraesCS2D01G117300
CAGTTCCATAATA------TATCATTTACCATTAATAGCTGTCATCAAATTCTTGTACAGTTCTGACTATGCTTGCTGAT
GATATTCATATATAATAACAGAAAATGTTATGCACATGTTATGAAGCCATTGCTAACTTCTAAATGCAACTTCTTGTCTC
TGTTTTTTGTACATATTT-TTCTGACGAAAAATATTTTGAGATCAGGATAAAAATAAGTGTGAAAAGAGAAGAGCTGAGC
TGAAATTACAAGCTACAGAGGCTTTTAATAGGAAGGAATATCTGATAGCAGGAGAACTATATACTTGTGTAAGTCACTCA
GCTGCATCGTGATTGCTTTTAGGCTGTTAGAACTTAGAATTGCTGAACTTAAAGCTGGCTGCAACACCATAGCTCTGTTA
ACACCTTACAGAAGTTGCTTTTGATGCTA---------------------------------------------------
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--------------------------------------------------------------------------CCTTAA
TTTGGTATTTATTTTAATGAGAGTTTCTTACTCCATATTCATTGAGCTTGGAAAAACTGTTATGTACAGATAAGCAAAAG
CAAAATGCAAAAAACATAGAAAAATTACAGAACAAAAGACAGCAGAGATTTTTATGTCAAAACTTTGGTGGTACTTGTGA
TTTGTGACCAAGTTTTCCTGCACTGTTTATGGTGGGAAGTTAGGTTAGCTAGATTGGCTAGGCCTTCTTCTTCTCTCTGA
ATGTTCTTTTAATGTCGCGCTTTCTCCTTAAT---------------------------------ATGTGAAGTTTTCGG
TATTTAGTTTGGGCTCA------CCTTTTCTTAAATACAAATGTTGCAAAATCAATTAAGTTAGAACATACTCCCTCCGT
CCCAAAATAAGTGACTCAACTTTGTACTAACTTTAGTGGGACGGAGGGAGTACATTTTAAATTTGAACTAAAACATTCAG
ATGTTTTCTCTCTCCGAGTTTGTAGCTAGCAATGCTGAGTAGTTTAAATCTCGTGGGTAATTTTTTTTTAATATTGG---
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------TGTATGCATCACTACCATGTTACATCAACCACCTCTGCGGTTGGTATGCAGGCAATGAAATTTGAGCCTAGTCC
AAAAGATCTTGCAATCCTGCTAGCAAATAGGAGCTTCTGCTTGTTGCGCCTGGGAAGAGGAAAAGATGCTCTCTCTGATG
CTGATGCGTGCACAATGGTTAGACCTCGTTGGCCGAAAGGCTACTACCGAAAAGGCGCGGCTTTAATGTTGCAGGAGGTA
ACAAAAATTAGGAACATAATAGTAACACCCAATCTTTCATAGCCATGGTCGGAATTGATCAGCTGCTTGGTGTCTATTTA
CAGGACTATGAAAAGGCATCCGAGGCTTTTGAAGATGGCTTGAAGCTGGATCCTACAAATGCTGATATAGCAAATGCTTT
AAGGTAACCGTTCCATATTTTCATTTTGCGTAGTATTATGCGGTAGTGGTCGGCAGTGTCTTCCGTAACTAATTCGGCCA
TTAGATCTGGATGACCGAATTTGTTTCGGCCAATGAATCCTGGTAAAAAACCTGAAAAGACAGCATTGACAGAATTTGCG
AGTTCTGAATGTTGATCGTTGATCATGATCGTAATTTGCTATTGCTTATGAGTTATCATGCTTATTGTTGTTGTGTTTCT
TGCTGTCATTTGGCGTGAATCTATGCAGTGTAATACTGTCGAAATGCCTACAGAAATGGTACTGTAGTAAAAATTTGTAC
TGAAATCCCATCCAAATTTGCTGCTGTCTGCCACTTTCATATTGTTCGGTCACGACAGGAAAACTGACAGATTTTCCGGG
TAACAGAATTACCGGTCACTCAAATATGACCAAAGGCAGTTAGTTTGTTCATCTAATCTGGATGGCCGAGTTATAAAAAG
ATCGAAATAATAATACTGGATTTTCTGTCATGACCGAATGTCCAGCCCTTTATACTACACGCAGTCCTGCCTGCTTGATT
GGTTTGAGAATCACGTGGATTCAGTCCCCTTTTTT----AAAAAAAAACTTGGATTCAGTCATTTTTGCGTCT-------
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--------------------------------ATCGGAATTCAGAGTTACAATTGCGGCTGTCTTTCTGAAAACTCGAGA
TACATCTACATAGGGAAGAGGATCCAATTATCC-TGTTGCTATGTCCATGCTTTTGTTATACTATTTGCTC-TCTGGGAA
GCGTAGTAGTGCAGAAATCTCACGCATCAAAATGTTGTTGTTGTTGCAGGGAAGCCCGGGAGGCACTGAAGAACAACGGC
TGTGCTGAAAAGTGACGAGGGCTTCGTTCTTATGCAGTCTGTCGTGCCTGCAGAAGTTCAGGACCTGTTTTGAACTAGCT
TTTGTATGGTCTTGGCGTTCGGTAATGTCCGAAAATTCAGTCTTTTCATTTCGGTCTTTTATATGATTCGGCCATAGATT
TGACGCCCGGGT
>chr2B_1
CAGTTCCATTATATATTACTACTATTTACCATTAATAGGTGTCATCAAATTCTTGTACAGTTCTGACTATGCTCTCTAAT
GATATCCGTATATAATAACAGAAAATGTTATGCACATGTTATGAAGTCATTGCTAATGTCTAAATGCAACTTCTTGCCTC
TTTTTTGTAAATGT-TTTTTTCTGACCAACAATATTTTGTGATCAGGATAAAAATAAGTGTGAAAAGAGAAGAGCTGAGC
TGAAATTACAAGCTACAGAGGCTTTTAATAGGAAGGAATATCTGATAGCAGGAGAACTATATACTTGTGTAAGTCACTCA
GCTGCTT--------------------------------------------------GCTGCAACACCATAGCTCTGTCA
ACACCTTACAGAAGTTACTTTTGATGCTA---------------------------------------------------
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--------------------------------------------------------------------------CCTTAA
TTTGGTATTTATTTTCATGAGAGTTTCCTACCCCATATTCATTGAACTTGGAAAAAATATTATGTACAGATAAGCAAAAG
CAAAATGCGAAAAACATTGAAAGATTATAGAACAAAAA----------------------------------ACTTCTGA
CTTGTGACCAAGTTTTCCTGCACTGTTTATGGTGGGAAGTTAGGTTAGCTAGATTGGCTAGGCCTTCTTTTTCTCTCTGA
ATGTTATTTTAATGTTGTGCTTTCTCCTTAATAAAAAATGGTGTGCTTTCGAAAGTGTTACTAAAATGTGAACTTTTCAG
TATTTAGTTTAGCCCCA------CTCAC------ATACAAATGTTTCAAAAAAAATTAAGTTAGAATTT-----------
---------------------------------------------------------------------------TTCAG
ATGTTTTCTCTCTCTGAGTTTGTAGCTAGCAATGCTTAGTAGTTTAAATCTCATGGGTGATTTTTTTT-AATATTGG---
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------TGTATGCATCACTACCATGTTACATCAACCACCTCTGCGGTTGGTATCCAGGCAATGAAATTCGAGCCTAGTCC
TAAAGATCTTGCAATCCTGCTAGCAAATAGGAGCTTCTGCTTGTTGCGCCTCGGAAGAGGAAAAGATGCTCTCTCTGATG
CTGATGCGTGCACAATGGTGAGACCTCGTTGGCCCAAAGGCTACTACCGAAAAGGCGCGGCTTTAATGTTGCAGGAGGTA
ACAAAAATTAGGAACACAATAGTAATACCGAATCTTTCGTAGCCATGGTCGGAATTGATCATCTGCTTGGTGTCTATTTA
CAGGACTATGAAAAGGCATCCGAGGCTTTTGAAGATGGCTTGAAGCTGGATCCTACAAATGTTGATATTGCAAATGCTTT
AAGGCAACCGTTCCATGTTTTGATTTTGCGTAGTATTATGCGTTAGTGGTGGGCAGGGTCTTCCGTAACTAATTCGGGCA
TTAGATCTGAATGACCGAG-TTGTTTCGGGCAATGAATCCTGGCACCCA-----AAAAGACAGCATTGACAGAATTTGCG
AGTTCTGAATGTTGAACGTTGGTCATGATCGTAATTTGCTATTGCTTATGAGTTATCATGCTTAA---TGTTGTGTTTCT
TGCTGCCATTTGACGTGAATCTATGCAGTGTAATACTGTCGAGAAGCCTACAGAAATGGTACTGTAGTAAAAATTTGCAC
TGAAATCCCATCCAAATTTGCTGCTGTCTGCCACTTTCATATTGTTCAGTCACGACCGAAAGACTGACAGAATTTCTGGG
TACCAGAATTACC---------AATATGACCAA-GGCAGTTAGTTTGTTCATCTAATCTGGATGGCCGAGTTATTAAAAG
GTCGAAATAACAATACTGGATTTTCTGTCATGAC-GAATGCCCAGCCCTTCATATTACACGCGGTCCCGCCTGCTTGATT
GGTTTGAGAATCACGTGGATTCAGTCCCTTATTTCT-AAAAAAAAAAACTTGGATTCAGTCATTTTTGCGTAT-------
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--------------------------------ATCGGAATTCAGAGTTACAATTGCGGCCGTGTTTCTGAAAATTCTAGA
TAAATCTACATAGGGAAGAGGGTCCAATTATTCATGTTGCTATGTGCATGCTTTTGTTACACTATTTGCTC-TCCGGGAA
ACGTAGTAGTGCAGAAATCTCACGCATGAAAATGTTGTTGTTGTTGCAGGGAAGCCCGGGAGGCACTGAAGAACAACGAT
TGTGCTGAGAAGTAACAAGGGCTTCGTTCTTATGCAGTCTGTCGTGCCTGGAGAAGTTCAGGACCTGTTTTGAACTAGCT
TTTCGTCGGTCTTGGCGTTCGGTAATGTCCGAAAATTCAGTCTTTTCATTTCGGTCTCCTATATGATTCGGCCATAGATT
TGATGCCCGGGT
>chr2A_1
CAGCTCCATAATG------TATTATTTACCATTGATAGCTGTCATCAAATTCTTGTACAGTTCTGACTATGCTTGCTAAT
GATATTCGTATATAATAACAGAAAATGTTATACACATGTTATGAAGTCATTGCTAATGTCTAAATGCAACTTCTTGTCTC
TGTTTTCTGTACATATTTGTTCTGACGAAAAATATTATGTGATCAGGATAAAAATAAGTGTGAAAAGAGAAGAGCTGAGC
TGAAATTACAAGCTACAGAGGCTTTTAATAGGAAGGAATATCTGATAGCAGGAAAACTATATACTTGTGTAAGTCACTCA
GCTGCATT-TGATTGCTTTTAGGATGTTAGAACTTAGAATTGCTGAACGTAAAGCTGGCTGCAACGCCATAGCTCTGTTA
ACACCTTACATAAGTTGCTTTTGATGCTTCTTAAGGGCGTGTTCAGGAGCCCTCCCGTTTCTCAACTCCACAACTCCAGG
TGTGGAGTGCAGCCGAACGATTCAATTCGTCGTTATGGGAGTAAGAAGCTGGCTACGAGCGAAGTGCAAAATCGGAGGAG
TGGCGGAGCTAGGAAAACCGAGCTCTTCTGAAATGTACTGTAGAAGCGAGAGTTGCATGGAATTACCCCCTCCTACCACC
GCCAAGTGACGCTAGGAGGTACCGGTTCGAGTGCATCCCGAAACAATCTATTCCCCTTCCGCTCGTTGCCATGGGAACCC
TGGCCGCCGCCGCCATGGGAACCGGCCGCCGCCGCCGCCATGGGAACCGGCCGCCGCCGCGGCTACCAGCTGGCCTTCGT
CCTCTATCGAACGCCGCCGCCATGACCCCAAGATCCTCTCCTGTAGCTGTAGCTCGTCGTTGCTCTCACCCCATGGCCAC
GACCCCGAGCTCCTCTTCCCAACGACTCCTCCACCCCGCGCCTCCTGCAGCTGCAGTTCGCCGCTGCTCTCACCGTATGG
CTGACCCTGAGCTCCACACCCCCGCCTTCTGGTCCTGGCCTGCGTGGGTCGTCGCCGGTGGTGGTCGGGTAAAGGAGGCG
GCGCCTTGGTGGTTGGTGACGAGGAGGAAGCAGGGGCGGTGGCGATTTTCAGCCCAAACGGGCTTACAGGCCACCCATTA
TCCCATCCGACTGGGCCACAATGAGCCTAAATGGGCTTCCGGCCTGGGACGGTCGATCGAGCGAAGAAGCTGCGCTGCCG
AAAAATCACTAATTAAAGAGTACTCGTTGCAAAGAACACTCCACTTTCCCAGGTCGCGACAAGTGGCGCACATGCAGCGC
GCCACTTGTCGCAATATGGGAGTTTTTTTGATTTTTCGTAGATCCGTTTATTCAAAACGTTTTATTTCTTAAACCGTGCG
TCTAAATCTCAAACCGTTTCACCATTGGATTCCTCGCGTCGAGATCTTCAAAACTAGATCCCATGTTGATAGGTTTTCAC
GAACTTTTTTTCCACAAAAAAATCGAACTGGGAGCACGGTTTTTTTCCTTTTCCGAAAGAGGCACGCCCGTGCCGCTCGC
GAAATCACAACCGTGCCTCTCGTGAAAGCAAAACCGTTACTTTCGTGGAAGGAAAAAAAAACAAAAAACGCGTTTTTTTC
GTTTCCGAGAGGCACGGCCGTGACTCTCGTGAAGGTACAACCGTGCCTTTCCCGAAAGCAAAATCGTGACTCTCGCGAAA
GAAAAAAATAGAAGACGCATATTTTTTTCCCTTTCCTAGAGGCACGGTCGCGACTTTCGCGAAATCACAACCGTGCCTCT
CGCGGAAGCAAAAGCGTGACTCTCACGAAAGAAAAAAAACAGAAAAGCGTTTTGTTTTTCCCTTTCCTAGAGGCACGGTC
GTGACTTTTGCGAAAGCACAACCGTGCCTCTCGCGGAAGCAAAACCGTGACTCTCACAAAAGAAAAAAAAACAGAAAACG
CGTTTTGTTTTTCCCTTTTCCGAGAGGCACGGCCGTGACTCTCGCAAAAGCACAACCGTGCCTCTCGCGGAAGCAAAACC
GTGACTCTCGCGAAAGAAAAAAAAATAGGAAACGCGTTTTTTTCGTTTCCGAAAGGCACGGCCGTAACTCTCGCTAAAGC
ACAACCGTGCCTCTCGCGGAAGAAAAACCGTGACTTTCGCGAAAGGAAAATAAAAGAAAACACGTTTTTTTCGTGCAAAA
AAAAATCAAAAATTTTGCTTGATCGAAAAGCTAAAAAAGACCGGGGGAAAACCAAAACGTCGAAAAAAACCCGAAAAAAT
TGTTTAAAAGGCCAAAAACGCGTGCGGAAAAATAAAAGAAAAATCTGAAGGAAGCGTTCAGAGCGCGACACGTGGCAAAT
GGCTAAGAGCGCGCCAAGTGGCGCTGATCATTGCGAGGCTCCCGAAGGAGCGCTCGTTAACTAGTTGCTCCCCAGGATTT
TTATCGAGAAGCTGGCTGCTGGTTTGGGGCTGTGGAGTTGAGGAGTTTGAGGTTGTGGAGGGCTCCCGAACACGCCTTAA
TTTGGTATTTATTTTCATGAGAGTTTCTTACTCCATATTCATTGAACTTGGAAAAACTGTTATGTGCAGATAAGCAAAAG
CAAAATGCAAAAAACATAGAAAAATTACAGAACAAAACACAGCGGAGATTTTTATGTCAAAGCTTTGGTGGTACTTGTGA
TTTGTGACCAAGTTTTTCTGCACTGTTTATGGTGGGAAGTTAGGTTAGTTAGATTGGATAGGCCTTCTTTTTCTCTCTGA
ATGTTCTTTTAATGTCACGCTTTCTCCTTAAT---------------------------------ATGTGAAGTTTTCGG
TATTTAGTTTGGGCCCACCTTTTCTCAC------ATACAAATGTTGCAAAATAAATTAAGTTAGAACATAC---------
-----------------------------------------------------ATTTTAAATTTGAACTAAAACATTCAG
ATGTTTTCTCTCTCTGAGTTTGTAGCTAGCAATGCTGAGTAGTTTAAATCTCGTTGGTAATTTTTTTT-AATATTGATGG
ATTGGAGTATTATCAAAGAACTAGCTGTGAACAGGGGTGCATAGAAGCTTGCTATCTTGGTGCCAGAGCCATGAGTTGGT
CGCGAGATCTTATGGGTTTCACCTCTAGCCTACCTCAACTTGTTTGGGACTAAAGGCTTTATTATTTTTGTTGTTGTTAT
TGTTGTTGTATGCATCACTACCATGTTACATCAACCACCTCTGCGGTTTGTATGCAGGCAATGAAATTCGATCCTAGTCC
AAAAGATCTTGCAATCCTGCTAGCAAATAGGAGCTTCTGCTTGTTGCGCCTGGGAAGAGGAAAAGATGCTCCCTCTGATG
CTGATGCGTGCACAATGGTGAGACCTCGTTGGCCCAAAGGCTACTACCGAAAAGGCGCGGCTTTAATGTTGCAGGAGGTA
ACAAAAATTAGGAACATAATAGTAACACCAAATCTTTTGTAGCCATGG-CGGAATTGATCATCTGCTTGGTGTCTATTTA
CAGGACTATGAAAAGGCATCCGAGGCTTTTGAAGATGGCTTGAAGCTGGATCCTACAAATGTTGATATTGCAAAT-----
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>chr2A_1331
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----------------------------------------------------------------------CAAATGCTTT
AAGGTAAGCATTCCATGTTTTGATTTTGTGTAGTATTATGCGTTAGTGGTCGGCAGAGTCTTCCGTAACTAATTCGGACA
TTAGATCTGGATGACCAAATTTGTTTCGGCCAATGAATCCTGGTAAAAAAACCA-------AGCATTGACAGAATTTGCA
AGTTCTGAATGTTGAACGTTGATCATGATCGTAATTTGGTATTGCTTATGAGTTATCATGCTTAATGTTGTTGTGTTTCT
TGCTGCCATTTGACGTGAATATATGCAGTGTAATACTGTCAAAATACCTACAGAAATGGCACTGTAGTAAAAATTTGTAC
TGAAATCCCAGCCAAATTTGCTGCTGTCTGCCACTTTCATATTGTTCGGTCACGACCGAAAGACTGACAGAATTTCTGGG
TACCAGAATTACCGGTCACTCA-ATATGACC-AAGGGAGTTAGTTTGTTCATCTAATCTGGATGGCCGAGTTATAAAAAG
GTCGAAATAATAATACAGGATTTTCTGTCATGACCGAATGCCCAGCCATTTATACTACACGCAGTCCTGCCTGCTTGATT
GGTTTGAGAATCACGTGGATTCAGTCCATATTTTTAGAAGAAAAAAAACTTGGATTCAGTTATTTTTGCGTCTATCCGAA
AACACAACATTGACAGAATTTGTGAGTTCTGAATGTTGAATGTTGATCATGATCGTAAACTGCTATTGGTTATGACTTAT
TGTGCTTAAATGTTGTTGTGTTTCTTGCTGCCATTTGATGTGAATCTATGCAACGTAACACTGTCGAAATGCCTACCGAA
ATGCTAGTCAAAATTTCACTGACATCCCATCCAAATTTGCTGCTGTCTGCCACTCCATATTGCTTGGTCATGACCAAAAA
CTGACAGTATGTCTGGGTACCAGGAAACTTTGTTCATCAAATCTGGATGGTCGGCTTATAAAAAGATCAAAATAAAAGAC
AGGATTTTCGGTCATGACTGAACAGTCTCACCTGCTTGATTCGTTTGAGAATCACGTGGATTCAGTCCATATTTTTTTTT
TAAAAAACTTGGATTCAGTTATTTTTGCGTCCATCGGAATTCAGAGTTACAATTGCG-CCGTGTTTCTGAAAACCCGAGA
TACATCTACATAGGGAAGAGGATCCAATTA-TCATGTTCCTATGTGCATGCTTTTGTTATACTATTTGCTCGTCTGGGAA
ACGTAGTAGTGCAGAAATCTCACGCATCAAAATATTCTTGTTGTTGTAGGGAAGCCCGGGAGGCACTGAA---CAACGGC
TGTGCTGAAAAGTAACAAGGG--TCGTCCTTATGCAGTATGTCGTGCCTGCAGAAGTTCAGGACCTGTTTTGAACTAGCT
TTG-GTCGGTCTTGGCGTCCGGTTATGTCCGAAAATTCAGTCTTTTTGTTTCGGTCCTTTATATGATTCGGCCATAGATT
TGACGCCCGGG-
>SNPs
----------------------S------------------------------------------------------S--
-------S--------------------------------------S---------SS----------------------
------S--------------------------------S----------------------------------------
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-------SS--------------S------------------------S-------------------------------
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---------------S-----------------------------S----------------------------------
-------------------------------------S-----S-----------------S------------------
---------------------------------------------------------------------S----------
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--------------S---------SSSSSSSSSS------------------S------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
--------------S-----------------------------------------------------S-----------
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--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
-------------------S--------------S---------------------------------------------
-----------------------------S--------S----------------------S------------------
-------------------------------------------------------------S------S-----------
----------------S----S--------------------S-------------S--------------------S--
--------------------------------------------------S-SS--------------------------
---------------S------------------------------------------------S---------------
-----S------S-------------------------------------------------------------------
--------------------------------------------------------S-S--S---------S----S---
--S-----------------------------------------------------------------------------
S---------------------------------------S---------------------------------------
----------------------------S---------------------------------------------------
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-----------------------------------------------------------S--S-----------------
-------------------------------S-------------S----------------------------------
S-------------------------------------------------------------------------------
-------------S--S---------------------------------------------------------------
---SSSS-------------------------------------------------------------------------
------------
>forward_2884
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----------------------------------------------------------------AACATACTCCCTCCGT
CCCA----------------------------------------------------------------------------
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>reverse_4966
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-----ATGGTCTTGGCGTTCGGTAA-------------------------------------------------------
------------
