>input_sequence_83125
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--ATGGCGTCCCCTCGCCGCATGGCCACCGCGCCT---GCCG------------TCCTCCTCGTCCTGCTCCTCCTCGTC
GCCACGGGTA-----CGTCCGGCAAGCTTCCTCCCTCCCACCGATCGAGCTGCTGTAAACTGTAATTAATCATAGGCGCT
TAATTACTTT-TTGTGGTGGTTGCATT----GCAGAGATGGGGACGGTGAAGGTGGCGGAGGCCCGGACGTGCGAGTCGC
AGAGCCACAATTTCAAGGGCGCCTGCTTCAGCGACACCAACTGCGCCAGCGTGTGCCACACCGAGAACTTCCCCCGCGGG
CAGTGCCACCAGCACCACGTCGAGCGCAAGTGCTACTGCGAGCGGGACTGCTGA--------------------------
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>chr1A_1_TraesCS1A01G014000
AAATATAGAATGTGCATGAAAAAA-GTTGACACCAAAAAAATATATTTGAAAAAAATGTTAATCATGTATTTGAAAAAAT
GTTCAACGGGTACACAAAAATGTTTCATGTATCGGAATGAAAGGTTAAACGTGTATAAAAAATGTGAAAGCTCCGGATCC
GGTATGGGAGCATCACGGACCTAAGTATGATTGGTTGCTCTTTTTGTATGGAACTGGAACA-TTTTTTCAAACATATTTT
TTTGGTGTCAACTTTTCTTCATACAAATTCTATATTTTTTGTATAGATAAGAAACA-TTTTTATACACACATTTAACAAT
TTTTAATCATGTATTTGAAAAAATGTCAACTTTTCAAACATATTTTTCAAACATATTTGTTTGGTGTCAACTTTTTTTCA
TACACATTATATATTTTTTGTATAAATAAGGAACATTTTTTATACACACATTTAACAATTTTTAAATCCATGCTTAACAC
TTTTTGAAAT----------------------------------------------------------------------
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--------------------------CAGTCGGCCCACAGTGGGCCGACAGGACGCAATCAGCCCACAGTGGGCCGACAG
GGGCCAGTCGGCCAGCTGTAGGCCGACTGGACTCCAATCGGCCTGCTGTGGGCCGACTAGGCCCAGTCGGCCTGCAGCGG
GCCGACGCTGTATTATTTTTGAATTTTTTT-ATCCAGCATAATATTTATGAAAATTAATTAAAA-ATGTATTATTTAAAA
AAATAGCTAGATATAGATATAAATATAATATAGATAGATACAT-------------------------------------
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----------------------------------------------------------------------ATAGATATA-
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----------------------------------GATATAGT-------------ATAGATAGATA----------TAGA
TATAAAGA----TATAAAGATAGAGATGAAGACTATGAACTATGGACATGGACTTTTTCCATTCTAGTCAGGGATATTTT
TAGGGCTTTCTGGCTAGGGCTTGAGAAGCTCACAAGGGACGCCCGAGCTATATCTATATCTCGCT----TATAACAAGAT
GGTAGCTCCCCTCATCAGCAGCAGCAGTAGAGAGCTTTGATTTGACACTCA--------AAGAGAGCAAGTGCAGAAGAG
AGATGGCGTCCCCTCGCCGCATGGCCACCGCGCCT---GCCG------------TCCTCCTCGTCCTGCTCCTCCTCGTC
GCCACGGGTA-----CGTCCGGCAAGCTTCCTCCCTCCCACCGATCGAGCTGCTGTAAACTGTAATTAATCATAGGCGCT
TAATTACTTT-TTGTGGTGGTTGCATT----GCAGAGATGGGGACGGTGAAGGTGGCGGAGGCCCGGACGTGCGAGTCGC
AGAGCCACAATTTCAAGGGCGCCTGCTTCAGCGACACCAACTGCGCCAGCGTGTGCCACACCGAGAACTTCCCCCGCGGG
CAGTGCCACCAGCACCACGTCGAGCGCAAGTGCTACTGCGAGCGGGACTGCTGAGCTTAGGA------------------
---------------------------------TGACCAGAAAT-AAAGTAG-----CTCCATCGGTTTTTCCTCTTCAT
CTTCATGCATGCA--------TTCATGCATGTTGTTTAGGTGACGATCGATCCTGGCTCCGACGTGTTTGCGGCTTCAAT
TAGTTTGTGCGGTTAATGTATACTAGTAATGATGCATGCCACTGATGCATGTGGCTTCTCTGTGTTGTGATCTGTCTTGT
TTCTATATGTTGTGTTGTGTTGGAATCAGT-------CAGTTAGTTGGCTTGTCTCTTTTTTCCAAAAGGACCAGATCTA
CTACGCTAAAGATTCACCGGATTCCATACAAAGCACCTCTAAAATAATA--ATAAATATATCAAGTTCCATGGACACCG-
AATCGAATGACCATTGCTGCCGCTAGAACGGGACCACTAGTAGAAAACAGGGCTTTCGTTCAGACCAGATAAGCCCATTA
GTCCTGGTTCAATCACGAACCGGGACTAATGTGAGCATTGGTCCCGGTTCGTGCGCTAAAGGCATTAGTCCCGGTTCAAA
TGAGCATTTTAGTCCCGGTTTGAGACACGAACCGGGACTAAAGGGTGTGATGCCCTTTAGTCCCGGTTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTTTGTAAAAACCAAAAGAAAATGATAAAAACTTTAAAAATT
AAAATCCTTCGAGATGTAGTTATGTTACTACATCTACTAGTTAGGAAAATTTAAAAACATAAATTTGGACATGTTTTGCA
AAAAGTGTA
>chr1D_1
AAATATAGAATGTGTATGAAAAAAAGTTGACACC-AAAAAATATGTTTGAAAAAAATGTTAAACATGTATTTGAAAAAAT
GTTCAACGAGTACACAAAAATGTTTCATGTATTGGAATGAAAGGTTAAACGTGTATAAAAAATGTTCCAGCTCCGGATCC
GGTATGGGAGCATCACGGACCTAAGTATGATTGGTTGCTCTTTTTGTATGGAATTGGAACATTTTTTTCAAACATATTTT
TTTGGTGTCAACTTTT-TTCATACACATTCTATATTTTTTGAATAGATAAGAAACATTTTTTATACACACATTTAACAAT
TTTTAATCATGTATTTGGAAAAATGTCAACTTTTCAAACATATTTTTCAAACATATTTTTTTGGTGTCAAATTTTTTTCA
TACACATTCTATATTTTTTGTATAAATAAGGAACATTTTTTATACACACATTTAACAATTTTTAAATACATGCTTAACAC
TTTTTAAAACATATTTTTTATGTCAACTTTTTTGCATATATATTGTACATTTTTTGTATACATCAGGAACATTTTTTTAT
ACACGTTTAACATTTTTTAATTACATGATTAACATTTTTTAAACATATATTTTTTATGCCTACTTTTTTTGCAAAAACAA
TTAGCCCACAGCGAGTCAATTAGCTTCAATCGGCCCACAGTGGGCCGACAGGACGCAATCAGCCCACAGTGGGCCGGCAG
GGGCCAGTCGGCCAGCTGTAGGCCGACTGGAATCCAATCGGCCTGCTGTGGGCCGACTAGGCCCAGTCGGCCTGCAGCGG
GACGACGGTGTATTATTTTTGAAATTTTTTTATCCAGCGTAATATTTATGAAAATTAATTAAAA-ATGTATTATTAAAAA
AATAGC--------------------------------------------------------------------------
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>chr1B_217
AACAT---------------------------------------------------------------------------
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-----------------------------------------ATTTTTCAAACATAATTTTTTGGTATCAATTTTTTTCCA
TACACATTCTATATTTTTTATATGAATAAGGAACATTTTTTATACACACATTTAACAATTTTTAAATACATGCTTAACAC
TTTTCAAAACATATTTTTTATGTCAACATTTTTGCATATATGTTGTACATTTTTTGTATACATCAGGAACA-TTTTTTAT
ACACGTTTAACATTTTTTAATTACATGATTAACATTTTTTAAACATATATTTTTTTATGC--------------------
----------------CAATTAGCTCCAGTCGGCCCACAGTGGGCCGACAGGACGCAATCAGCCCACAGTGGGCCGACAG
GGGCCAGTCGGCCAGCTGTAGGCCGACTGGAATCCAATCGGCCTGCTATGGGCTGACTAGGCCTAGTCGGCCTGCAGCGG
GCCGACGGTGTATTATTTTTGAA-TTTTTTTATCCGGCGTAATATTTATGAAAATTAATAAAAATATGTATTATTTAAAA
AAATAGCAAGATATAG----------------------------------------------------------------
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>chr1D_702
ATAGA---------------------------------------------------------------------------
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----------------------------------------TAGATATAGATATAAATATAATATAGATAGATAGATATA-
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----------------------------------AATATAGT-------------ATAGATAGATAGATAGATAGATAGA
TATAAAGA----CATAAAGATAGAGATAGAGACTATGGACT------ATGGACGTTTTCCCTTCTAGTCAAGGAATTTTT
TAGGGCTTTCTTGCTAGGGCTTGAAAAGCTACGAAGGGACGCGGGAGCTATATCTATATCTCGCTTATATATAACGAGAT
GGTAGCTCCCCTCATCATCAGCAGCAG---AGAGCTCTGATTTGGGACTCGGGTGAAGCAAGAGAGCAAGTACAGAAGAG
AGATGGCATCCCCTCGCCGCATCGCCGCCGCGCCC---GCCGCCGCGCCCGCCACCCTCCTCATCCTGCTCCTCCTCGTC
GCCACGGGTA-----TGTCCGGCGAGCTTCCTCCCTCCCAGCGATCGAGCAGTTGTAAATTGTAATTAATCACCGGCGCT
TGATTACTTT-T-GTGGTGGTTGCATT----GCAGAGATGGGGACGACGAAGGTGGCGGAGGCCCGGACGTGCGAGTCGC
AGAGCCACAATTTCAAGGGCGCTTGCTTCAGCGACACCAACTGCGCCAGCGTGTGCCGCACCGAGAACTTCCCCCGCGGG
CAGTGCCACCAGCACCACCTCGAGCGCAAGTGCTACTGCGAGCGGGACTGCTGAGCTTAGGA------------------
---------------------------------TGACCAGAAAT-AAAGTAG-----CTCCATCGGTTTTGCCTCTTCAT
CTTCATGCATGCA--------TCCATGCATGTTGTTTAGGTGAAGATTGGTCCTGGCTCCGGCGTGTTTGCGGCTTCAAT
TAGTCTGTGAGGTTAATGTATACTAATAACGATGCATGCCACTGATGCATGTGGCTTCTCTGTGTTGTGAT--GCGTTGT
GTT------------------GGATTCAGTCAGTTTGCAGTTAGTTGGCTTGTCTTTTTCTTCAAAAAGAT-TAGTTCTA
TTACGATATAGATTCACCGGATTCTGTACAAAGCACCTCTAAAATAATA--AAAATTACATCAAAGTCCATGGACCATCA
AATCGAACGATCGTTGCTGCCGCTAGAA----------------------------------------------------
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>chr1B_737
AAGAGAGCAAGTGCAGAAGAAAAATGGCGTCCCCTCGTCGTCGCATGGCGGCCGCGCCCGCCGCCGCCCTCCTCATCCTG
CTCCTCCTCGTCGCCACGGGTGCGTCCGCCGAGCTTCCTCCCTCCCTCCCTCCCTCCCTCCCAGCGATGGAGCATCTGTA
AGCTGTAATTATTCACCGGCGCTTAATTTACTCTCTGTGGTGGCCGCATTGCAGAGATGGGGACGGCGGAGGCCCGGACG
TGCGAGTCGCAGAGCCACAGGTTCAAGGGCGCCTGCTTCAGCGACAGCAACTGCGCCAGCGTGTGCCGCACCGAGAACTT
CCCCCGCGGCCAGTGCAACACGCACTACGTCGAGCGCAAGTGCTACTGCGAGCGGGACTGCTGAGCTAATTCCGTCGGCG
GATGGACGCTTGTTCGTTCGTGTGTTAGGATGACGAGAAATAAAAGTTGTGTTGCCTCTTCATCTGCATGCATGCGTGTA
TCTAGGTGAAGATCGGTCCGGGATGCATGTGGCTTCTCTGTGTTGTGTGTTGTGTTGTGTTGGATTCAGTTAGTGTTGGC
TTATGAGACCGGCTTTTCTACCATGCACGGGACGTACCGTGCATAGCTGAGCACTTAATACTTTTGGGTGGGATCCATGT
CACTTTTTCCACGGAGATGTTTGATATATTTTTAATTCTCTATACTGTCATATCCATTGGGTGTTGTGTCAGAAATGCTA
CACATATTTCTATTTTTTTTACAGATATGTGTGCACTATTCAACTACGTACGTACTCTCCTTCCACAAACATGTGCATTG
CAATATAAAGATACTAAAATATTCAAATGTTTATCATAATGTTTTATTATTTTTTTAAAGGAAAAACAACCATATGTACT
ATTTTACCGTGGTTTATCTGTTCGAGATCGTATCATAAAGTTTCATTCAGTGTCAATACACTGAAAACTTATCAGGTTTT
TCGTGTTCTAGATTGCATTATTATGTTCCATAGAGTTTCATCATGTTCTGGAATATTATATTGCATTATTATGTTTCATA
GAGTTTCATCATGTTCTGAAATATGGACTTTAAAATCTCTCAAAATATATTCAACAGCGGTTTTGTTTCAAAGTCCTAAT
CGCAAGGAACTCAAATAGCAATTGTGTGATTCAAAAAATAAAATAGATTGAAGCTTTGGAATTATATGAAAAAATATGAA
TGGGCCAGGGATATAGAAGAGAGGTTGCTAACGTATGGCATATTTTGTGACTTGAGTGGGGACCAACATGCATGCATCTT
CAATAGATTGCACGGCTGAGCCATGGCACGGGTCTCCGGTGCAGGGTAGAATTTCTTTTTGGAAAAAGTCCATTTTAAAC
CCTTGAACTCGTAGAGAGGTTCGGTGAATCAAACCCTCAAGTCTAAATCTCTGTTGTTTGCACCCTAAACTATACAATCC
CGGGCTAAATCAAACCCTAACAAAAGTTAACCGGGATTTGTCTGGTGGGCCAGCACATTTGTTTTTTTGTTTGCTCAAAA
AAAGTTGGCTTTATTCCTTCTGTCGCACGCACAGGCGAAACTCCGACAGGGCCGGCCCATGAAAACTGGTGACCGTGCGG
ACCTTGAGCCTGTAACGCTAAATCCGACCGGGCCGGCCCATGAAAACTGGCGACCGTCAGCGGAGCGCTAAAAGGATCTG
GCGCAACAGATACCCTGGTACTACCAGTTCTGCTACCAACTGAATCTGTTTAATTAGCAACACAAAGCAATATATGCCTA
ACGAAAAGCTACACAAAACTTTAAGAATCAACACCAGATTCGAATATTTTTTTAAATTTCGAACGCAAAAAATGTTTTGA
TTCTTTTTGAGTGTTTATGAAAAGCGACCACATTTCAAATTTAAGAACACATTTAAGAAACTAAATTTGGAGAATTCAAA
CAAACTTTTGGAACATGCACATTTATTAAAACACCCGAACAAAATTAGGAAAACGAACATTCTTTAAAATTCGCACGCAA
TTTTGAAATGGGCTGAAAACGCGGACATTTTTAGAATTTTATGAAATATAGGAACATTTTTTAGAACTCCAGAACAAAAT
TAGAACACACCAACATTTTTGATTTTTGATTTTTGTTAAACTGAACCAATTTTTGAAATCACAAAGATTTTTTTTAAAAG
TTGTCAACATATAAAAAACATTATGAACAAATTTTCAAAATAAGGAACATTTTTTAAATTCCGTCTATCGACAACACAAT
GTCTCGGGTTCGAGCCAACCCTGCGGCTTATTTTTTTAACAGAAAAAAAACTAAAGCAGGCCTGCCCAGCAGGGAGCAGG
GTGTTCGTCTGCGTTTTAATGCAAAAATGAATAATTCCGACCATTGAACATTTTTGTAATATACAAAAAATATTTCTTAA
ATAAACATTGAGCATTTGTGTGATATACGCTAAACAATTTGTAAATACACAATGAACATTACTGTGATATACGCTGAACA
ATTTGAAAATATACAATGAACATTACTGTGAACGCTGAACAATTTGAAAAGGCACAAAAAAGAAGAAAGTAAAAATAAAC
AGAAGAAACACAGATTGTTCCTCGTATTAAAGTATTATTAATGAAAAAATGGCAATGAAACATTTCCTGATAATGTATTA
ATGGAAGAAGAAGGAAAAGAAAACGAAAGAAAAAGGCAGGAAGAACATGAAAGAACCAGAAAGAAAAAACCTAAAAGATA
AAATAAAACAAAAGGTCAACAAAAGAAATGAACGGAAAAATAAAGCAGTGAACGAGCAGCGCGGCCGCGAAATGGGCCGG
CCCACGCGCATGCGTAGCGCTGCTGCGGGCGGCAAATTGGTTCCGCCACCAATCCCGGCCATCCTTTGCAATCCCTGTTT
GGCAAACGATTCCAGGGTTTGATTTAGACCGGGATTGCATAGTTTAGGGTGCAAACGACGGGGATTTGGACTTGAGGGTT
TGATTCGCTGAACCTTTACGAGTTCAAGGTTTTAAGTGGATGGACTTTTTCCATTTCTTTTGTCGGTGGCGTGTCTCTTG
TTTTTACATAAGGATCGGATCTATTATGATAAAGATTCACTGGATTCCGTACAAAGCACCTCTAAAATAATAATAAAATA
TATCAAGGTCCACGGACCCCGAACGACCGTTGCTCCCGTTAGGACGAGACGATGTGTCCCTGTCTTTGCGTCATAGCCGG
CCAGACCTTGTCAACGATCTTGTCAACGGGAAGTCTTCATACAAGTGTCCCTAATTATCATCACCATGTTGCCGTCGTTG
ATTGCCTAGACAAATCTACTTCGCTTGTCTATTAAGGGAGCAAAAAATTTCTTTTTTATTTTATTTTATAAGGTGGAAGT
TTAGGGCTAAACCTATTTAATTGTAGTATTTGTTTCGTCTTCACGTGTTCTTAGTATTGAAAATGGAAAGGGAAAAAAAC
GAGATGTTTCTTGAGAAATGCCAGGGGGCTAGAGAATGCAATTTATTCGGGCCGTCTTCTCTCCTTTTGTTATTTACTAG
GACAATGTCTGTAGGGTTTTCTTTTGGGATAAAGGGAGTTTTATTTTTATGTAATAGTGTTACAGTCAAGAGGCCACAAA
TTCTTAGTACAAGGTGGAGTCGAGACCAACCACACAGCAGTTGTACTCTCGGTACGGCTATATTTGGCCAGCCGATCTGC
AACTCGAAGAATTTTCTAAGGATAAAACTCCCTAATACACATTAACTCTTTGATCTACGAAGACTTTTCTGAGGATAAAA
CTCCCTATTGCACGTTAACTCTTTGATCTGTGAAGAATTTTCTGAGGATAAGACTCCCTAATACACATTAACTCTTTGAT
CACCCGAACCAAAGAACCCTACACAGAAGGCTCCAGTCCACTGTTCGACAAGCAAGATAGTGCTTCACACGAGTCTGACT
GAACGATAACCGGAAGTATAAATAATGCCAGTAGGTTACAATGGATATAAATAATCTATTATGTCAGATCGTCATTTACC
TGTCTATAATACAATTGTTTTTGTAGGGGAGGCTATTAATACAATTGTGTAAATAAATTTTTGGGGTGTAAATAATCCAT
TATGTTAAATTGTGATTTACCTATATATATTAAGACAATTATGTAATAAATGTTTATCAAATCTTCTTCGTGATTTACCT
TATTGTGATAACAAGTTTTGTAAGTAAACTAAAATTAAATCTCAAGATGATATGCCGGCTCAGTCTTTCGAAGGTGCTCA
TAGGGATAGGGCGTGCGTGTGTGCGTTCATAGAGGTGAGTGTATGCGCGTGTATATGACCGCTTGTGTCTGTACTGATGC
TCAAAAAAAATTAAATTGGTTCAGAAGATAAATAAA-TTAAAATGATTAATTATCATATGGGGAGGTTAGACGAGGGGGG
TCAGGAAAAGAAAAATGAAACAT-GACACCTTTAGATAGATAGATATAGATATAAATATAATATAGATAGATAGATATAG
ATTATACCTGGCCATCTGTCGGGTCGGGCCGGTCTTCGGGCCAGGCCTACCAAAGCCCGACAC-AATAAACCTAGGCCCG
AGCTCGGCCCATCAGTCAAAAAACCCAGCAGGCCTCGGGCCACGGGCCGGTCCTCTTCCTTAAACGGTGAATATGCCAGG
ACCGAGCCCGG----------CTGCCGGGCCTAAAAATCAGGCCCAACCCCAGCCCGTGGACAAGGTCGGGTCGGGCCGT
CCGGGTCGGGTTGCCCATGGCCAAGTATAATATAGATATAGT-------------ATAGATAGATAGATAAATAGATAGA
CATATAGACAGATATAAAGATAAAGATAGAGATTATGGACT------ATGGACTTTTTCCCTTCTAGTCAAGGATTATTT
TAGGGCTTTCTAGCTAGGGCTTGAGAAGCTCCCAAGGGACACGGGAGCTATATCTATATCTCACT----TATAACGAGAT
GGTAGCTCCCCTCATCATCAGCAGCAGTAGAGAGCTCTGATTTGACACTCGGGTGAAGCAAGAGAGCAAGTGCGGAAGAG
AGATGGCGTCCCCTCGCCGCATGTCCGCG---------------GCGCCCGCCGCCCTCCTCATCCTGCTCCTCCTCGTC
GCCATGGGTA-----CGTCCGGCGAGTTTC-TCCCTTCCATCGATCAAGCAGCTGTAAACTGTAATTAATCACCGGCACT
TAATTACTTTTT-GTGGTGGTTGCATT----GTAGAGATGGGGACGATGAAGGTGGCAGAAGCACGGACATGCCAGTCAA
AGAGCCACAAATTCAAGGGCGGCTGCTTCAGCGACAGCAACTGCACCAGCATGTGCCACACCGAGAACTTCCCCCGCGGG
CAATGCCACCAGCATTACGTCGAGCCCAAGTGCTACTGCGAGCGGGATTGCTGAGCTTAGGA------------------
---------------------------------TGACCAGAAAT-AAAGTGG-----CTCCATCGGTTTTGCATCTTCAT
CTTCATGCATGCA--------TCCATTCATGTTGTTTAGGTGAAGATAGGGCCTGGCTCCGGCGTGTTTGCGGCTTCAAT
T---------------TGTATACTAATAACGATGCATGC--CTGATGCATGTGGCTTCTCTGTGTTGTGAT--GTGTTGT
GTTTCTATGTGGTGTTGTGTTGGATTCAATCAATCTGCAGTTAGTTGGCTTGGCTTTTTTTTCAAAAGGAT-CAGATCTA
TTACGATATAGATTCACCAGA-TCCGTACAAAGCACCCATAAAATAATAATAAAAATATATCAAAGTCCATGGACCATCA
AATCGAACGACTGTTGTTGTCGCTAGAATGAGACAAC-------------------------------------------
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>chr7B_737
TGGCT---------------------------------------------------------------------------
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-----------------------------------------------------------------------TGTCTCTTG
TTTTTACATAAGGATCGGATCTATTATGATAAAGATTCACTGGATTCCGTACAAAGCACCTCTAAAATAATAATAAAATA
TATCAAGGTCCACAGA-CCCGAACGACCGTTGCTGCCGCTAGGACGAGACGACGTGTCCCTGTCTTTGCGTCATAGCCAG
CCTGACCTTGTCAACGATCTTGTCAACGGGAAGTCTTCATACAAGTGTCCCTAAATATCATCGCCATGTAGCCATCGTTG
ATTGCCTAGACAAATCTACTTCGCTTGTCTATTAAGGGAGCAAAAAGTTCTCTTTTTATTTAATTTTATAAGGTGGAAGT
TTAGGACCAAACCAATTTAATTGTAGTATTTGTTTCGTCTTCACGTGTTCTTAGTAACGAAAATGGAAA-GGAAAAAAAC
GAGATGTTTCTTGAGAAATGCCAGGGGGCTAGAGAATGCAATGTATTCGGGCCGTCTTCTCTCCTTTTGTTATTTACTAG
GACAATGTCTGTAGGTTTAT-TTTTGGGATAAAGGGAGTTTTGTTTCTGTGTAATAGTGTTACAGTCAAGAGGCCACAAA
TTCTTAGTACAAGGTGGAGCCCAGACCAACCGCACAGTAGTTGTACTCTCGGTACGGCTATATTTGGCCAGCCGATCTGC
AACTCGAAGAATTTCTGAGA-ATAAAACTCCCTAATGCACATTAACTCTTTGATCTACGAAGAATTTTCTGAGGATAAAA
CTCCCAACCGCACCTTAACTCTTTGATCTACGAAGAATTGTCTAAGGATAAAACTCCCTAATGCACATTAACTCTTTGAT
CACCCGAGCCAAAGAACCGTACGCAGAAGGTTCCAGTCCACTGTTTGACAAGCAAGATAGTGCTTCCCACGAGTCTGACT
GAACGATAACCGGAAGTATAAATAATGCCAGTAGGTTACAATGAATATAAATAATCTATTATGATAGACCATGATTTACC
TGTCTATAATACAACTGTTTTCTTAGGGGAGGCTATTAATACAATTGTGTAAATAAATTTTTGGGTTATAAATAATCCAT
TACGTTAAATTGTGATTTGCCTATATATATTAAGACAATTATGTAATAAATGTTTATCAAATCTTCTTCGTGATTTACCT
TATTTTGATAAGAAGTTTTGTAAGTAAACT--------------------------------------------------
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------AAAATTAAATTGGTTCAGAAGATAAATAAAATTAAAATGATTAATTATCATACGGGGAGGTTAGACGAA-GGGG
TCAGGAAAAGAAAAATGAAACATTGACACCTTTAGATAGATAGATATAGATATAAGTATAATATAGATAGATAGATATAG
ATTATACCAGGCCATCTGTCGGGTCG-----------------GGCCTACCAAAGCCCGATGCAAAAAAACCTAGGCCCG
AGCCCGGCCCATCAGTCAAAAAGCCCGGCGGGTCTCAGGCCACGGGTCGGGCCTCTTCCTTAAACGATGAATATGTCAGG
CCCGAGCCCGGCCTGGCCTGACTGTCGGGCCTAAAAATCAAGCCCAAGCCCAGCCCGTGGGCAAGGTCGGGTCGGGCCGT
CAGGGCCGGGTTGCCCATGGCCAAGTATAATATAGATATAGATATAGTATAGTAGATAGATAGATAGATAGATAGATAGA
TAGAT------------------AGATAGAGACTATGGACT------ATGGACTTTTTCCCTTCTAGTCAAGGATT-TTT
TACGGCTTTCTAGCTAGGGCTTGAGAAGCTCCCAAGGAACGCAGGACCTATATCTATATCTCACT----TATAACGAGAT
GGTAGCTCCCC---TCATCAGCAGCAGCAGAGAGCTCTGATTTGACACTCGGGTGAAGCAAGAGAGCAAGTGCAGAAGAG
AGATGGGGTCCCCTCGCCGCATGTCCGTCGCGCCC---ACCG------------CCCTCCTCATCCTACTCCTCCTCGTC
GCCACGGGTA-----CATCCGGCGAGCTTCCTCCCTTCCATCAATCGAGCAACTATAAACTGTAATTAATCACCGGCGCT
TAATTGCTTTGT-GTGGTGGTTGCATT----GCAGAGATGGGGACGATGAAGGTGGTGGAGGCCCGGACGTGCCAGTCGA
GGAGCCACAAATTCAAGGGCGGCTGCTTCAGCGACAGCAATTGCGCCAACGTGTGCCACACCGAGAACTTCCCCCGCGGG
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>chr1A_934
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-------CCCCGCAGCAGCAGCAGCAGCAGAGAGCTCGGATTTGACACTCGGGTGAAGCAAAAGAGAAAGTGCAGAAGAG
AGATGGCGTCCCCTCGTCGCATGGCCGCCGCGCCCGCCGCCG------------CCCTCCTCATCGTGCTCCTCCTCGTC
GCCACAGGTG-----CGTCCGCCGAGCTTTCTTCCTTCCTCCCAGCGAGCATCTGTAATCTGTAATTGATCACCGGCGCT
GGCTTAATTACTTACCGTGGCTGCATT----GCAGAGATGGGGACGACGAAGACGGCGGAGGCCCGGACGTGCCAGTCGC
AGAGCCACAAGTTCAAGGGCGCCTGCTTCAGCGACACCAACTGCGACAGCGTGTGCCGCACCGAGAACTTCCCCCGCGGG
CAGTGCAACCAGCACCACGTCGAGCGCAAGTGCTACTGCGAGCGGGACTGCTGAGCTTAGGA------------------
---------------------------------TGGCCAGAAAT-AAAGTACTCCGACTCCATCGGTGTTGCCTCTTCAT
CTTCATGCATGCA--------TCCATGCATGCTGTTTAGGTGAAGATCGGTT----------------------------
-------TGCGGTTAATGTGTACTGG----------------TGATGCATGTGGCTTCTCCTTGTTGTGAACT-------
----------TGTGTTGTGTTGGATTCAGT-------CAGTTAGTTGGCTTGTCTCTTTTTTC-----------------
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>chr1D_983
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----------------------------------------------------------------AGCAAGAGCAG-AGAG
TGATGGCGTCCCCCCGTCCCATGGCCGCCGCGCCCGCCG---------------TCCTCCTCCTCGTCCTGCTCCTCGTC
GCCACAGGTACGTTACGTCCGCCGAGCTCCTTTCCTGCAAGCGAGCATAGATCTGTACTACTC---TACTCACCGGCACT
TACTTATTGTGG-GCTGTGGTTGCCTTGCAAGCAGAGATGGGGACGATGAAGACGGCGGAGGCCCGGACGTGCCAGTCGC
AGAGCCACAAGTTCAAGGGCGCCTGCTTCAGCGACACCAACTGCGCCAGCGTGTGCCGCACCGAGAAGTTCCCCCGCGGC
CAGTGCAACACGCACTACGTCGAGCGCAAGTGCTACTGCGAGCGGGACTGCTGAGCTTCCGCCTCCGTCGGCGCCTGTTC
GTTCGTGTCTTCCGTGCCGGTCGATCTTAGGATTGACCAGAAATAAAAGGAG-----CTCCATCGATGTTGCCTCTTCAT
CTGCATGCATGCACGCATGCATCCATGCATGTGGTTTGGGTGAAGATCGGTCGTGGCTCCGGCGTGTTTGCGGCTTCAAT
TAGTTTGTGCGGTTAATG--------------------------------------------------------------
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>SNPs
--------------S-------------------S---------------------------S-----------------
--------S-----------------------S----------------------------------S------------
-----------------------------------------------------S--------------------------
----------------S------------------------S--------------------------------------
----------------------------------------------------------S-----------S---------
--------S----------------------------------------------------------S------------
---------S----------------------------------------------------------------------
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-------------------------------S------------------------------------------------
-------S---------------S--------------------------------------------------------
-------S--------SSSSSSSS-S-SSS--SSSSS-SSSS--------------------------------------
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---------------------------SS--------S---SSSSSS-------------S---------S----S----
-----------S-------------------S----------SS-------------------------------S----
------------------------------------S-------------S-----------------------------
--------------------------S-------S---------------------------S-----------------
-----------------------S--------------------------S---------------------SS------
----------------------------------------------S---------------------------------
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----------------------------------------------------------------------S---------
----------------------S--------------------S-----S-----------S------------------
-----------------------------S---------------------------------------------S----
S-S-S-------------------S--------------------------------------S-----SSS--------
S----S--S----------------S--------------------------S-----------SS---------SSSS-
-------S----S---------------S-S---S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS
>forward_4997
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-----------------GCAGCAGCAGTAGAGAGCTT-------------------------------------------
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>reverse_6012
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-----------GTCCCGGTTTGAGACACGAA-------------------------------------------------
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