>input_sequence_83117
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--------------------------------------------------------------------ATGGGCGCGAGC
CTCCTGCAGGCGGTGGCGGCGCTGGTGAGCACGTGCACGCGGCGGCTGCAGCGCGCGGCGAAGAGGATGGGCAG------
------CGGCAGGCCGGCCGTGGCGCCGTGGAGGAAAGCCTTCTCGCTGCCGACGGGCAAGGGGAGGGCGTTGGGGCGGG
AGGAGGAGGAGGAGGGCGGGCTGTGGAGGAAGGAGATACTCATGGGGGAGCGCTGCCGGCCGCTCGAGTTCTCCGGGGTC
ATCTACTACGACGCCGACGGACACCGCCTCGCGCAGCCGCCCCGCTCGCCCATGCGCAGCCCGCTCCCGGCGTCCTTCAA
GCTCGCCGCCAACGCCGGCGTCCGCTAG----------------------------------------------------
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>chr7D_1_TraesCS7D01G229700
GAGCCGTAGTATCCTACTCCCTGTTTAAAAAATGGTA-ACAATCTGTGTGCTCAGGATAAAGAACATCACCTCCGACGGT
TTGTTCTGGATTTTTTTTTTGCCGCCGCAATTTGCAATGCTGCGCTAATGAATTTGCGCAATTTAGTCGGCTCATACAAA
ATCGAAAGCGATGGACGTTTAGCGATATGGCACTTGAAAGGGCACGCAGGTTTAGTTTATTCG---------GGGTCAAC
CAGGAAGAAATGTGGGAG---------------------------------AGGTAATCTTGTGAGGTTAATATGCCGCG
TGATCATCATCTTGACGCCTTCTCGCTCTTCACAAATCACAAGAGCCGTAAAC-TGGAGCTCAAGTACGTACGTACGTGA
ACGCA-GACCACATCAGGTGAAATGAATTATTGCGTTTTTTGTTTC-TCCCTGTCCAAATCCACTGACGGACGAGCCAGG
G-TTGCCATGCCAAAGGTCAGCCGCCATCTTCATCACCATCTTGCAGAAAATA---------------------------
TATGAAAAACTAAGATCATTACTCAGACATTACATTATTAGTTTATAGAGGGAGTAGTGATCTAAACACTTTTATATTAG
TTCACATAGGGAGTATGTAAGTATTGTAAATGTAGAATATTGCATCGGGTATAAAAGATCACAGAGGATACTGTGGATCA
CAGTAGGCGGGAACTCCATCGGAGAATATCAATCG-GACGCCGGGGATATGGTAGTGAATCTGGAGCTCTACCAGAAACT
TTCTCTTTCTCTTTT--GAGAGGAAGATGGCATTC---CATCCGTTTGGATTAGATCACGCCGATTAGTAGCAAAACTGA
ATTAAGTAGACAAATATCTTTCCAACCCACTTGTTTGACTTTCGCGCAGCGCCCGCCTCCACCACCCCCGAGCCCACCCC
GCCGCCTATATATGCCGCCAAACCCGACGGCCACCACCCCACAGCAGTAAACTCCGCTGCAGCACACACAAACCATAGAC
CAGGCAAGAAGCCAAGGAGCGTGAGACCGGCCG----------------------------GCCGGAGATGGGCGCGAGC
CTCCTGCAGGCGGTGGCGGCGCTGGTGAGCACGTGCACGCGGCGGCTGCAGCGCGCGGCGAAGAGGATGGGCAG------
------CGGCAGGCCGGCCGTGGCGCCGTGGAGGAAAGCCTTCTCGCTGCCGACGGGCAAGGGGAGGGCGTTGGGGCGGG
AGGAGGAGGAGGAGGGCGGGCTGTGGAGGAAGGAGATACTCATGGGGGAGCGCTGCCGGCCGCTCGAGTTCTCCGGGGTC
ATCTACTACGACGCCGACGGACACCGCCTCGCGCAGCCGCCCCGCTCGCCCATGCGCAGCCCGCTCCCGGCGTCCTTCAA
GCTCGCCGCCAACGCCGGCGTCCGCTAGCTAGCGTCAGTGCGGAGGCGCTCCTCCTCCTCCTCCTCGTCCTTCCTTGG--
----------GCCGAGCAGAGCGGAAAGATGGCGAAGCTTGCTCTGTTTTTTGTCCGGTGAGAGAGGCAGAGTATTCGTG
TATATGTTGGTTCTTCTTAGTCCCCTGTTTCTTTTTTATTTT--ATTAATGGTCTTGTAATG---ATAGGAATTATAAAC
TA---TACTTTCCTGCAAAATTTGGTGTTGTCTAAGCAAGCTTCTTTGATTGAAC-----------CTGCTTGTGGGAGT
TGATCGTCTAGGCAAGTTATTCTC-------------------------------------CTTTAGAAATCTTCATGAT
TTATGCGCTCGGTTTTTTTTTGACCAAAATGATTTATGTGCTAGATTGATCAGCGCAGCGTGAATGGTAAGACTAATATT
TTGGCTTTAAT--TACCTATAAGCCAGGTCACATGAGTCCACACACCTATGTGTTCAACGAACCGTACCGTAAATATGGC
ACCGTTTCCTTGTGTGCTCATTTCGTTCTGCCTGTTATATGCCTCTCTTTTTACGGG-----ATAATAATTTGTAGTATT
ACTCAAATATCACGGTTACAACCATTTTGGTGTCTTGCCCATGTCATGACATGGGTTTTTAAGAACGGTATGTAGCCATT
AGAAGCGATTTTAAGAACCTGTGTATATCGAAACCTACTTCATAAAACTTAGCCAAAAAGACATGTAAGTTCTGCAAAAT
ATGACAAAAGATCACGCACACACCCC----------CACACAATAATTA-------------------------ATAAAT
GAGAAAATTAAGATGTACTCCCTCCGTTTCAAAATTCCTGTCTTAAATTTGTCTAAATACGGACGTATCAAGTCACGTTT
TAGTATTAGATACATCCGTATCTAGACAAATTTAAGACAAGAATTTTGGGACGGAGGGAGTATCATTTTCAAAAAGAAAA
CCACCCAGGTCAGAAATTGTCATATTAC-TCAA-----------------------------------------------
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-------------------------AAATTGCATGTGTAAGTTTCAACTCAATATGTAGACGAATGTATTTCTTTGATTT
TTTTTGTCACA
>chr7B_1
GAGCCGTAGTATCCTACCCCCTATTTAAAAAATGGCAGACAATTTGCGTGCTCAGGAAAAAGAACATCACCTCTGACGGC
TGATCCTGGATTCTTTTGGTGCCGCCGCAATTTGCAATGCTACGCTGATCGACTTGCGCGTTTTAGTCGGCTCACACAAA
ATCGAAAGTGATGGGCGTTTAGCGATATGGTACGTGAAAGGGCACGTAGGTTAAATTACTTCG---------GGGTCAAC
CAGGAAGAAATGCGGGAG---------------------------------AGGTTATCTTGTGAGGTTA--ATGCCGCG
TGATCATCGTCTTGACGCCTTCTCGCTCTTCACAAATCACAAGAGCCGTAAAC-TGGAGCTCGG----GTGCGTACGTGA
ACGCA-GACGA-ATCAGGTGAAATGAATTATTGCGTTTTATG-TTC-TCCCTGTCCACATCCACTGACGGACGAGCCA-G
G-TTGCCATGCCAAAGGTCAGCCGCCATCTTCATCACCGTATTGCAGAAAATA---------------------------
TATGGAAAACTAAGATCATTAGTCAGACATTACATAATTAGTAGTGCATAAGTATTTCAAGC------------------
-------------------------------GTAGAATATTGCATCGGGTATACAAGATCACAGAGGATACTGTGGATCA
CAGTACACGGAAACTCCATGGAAGAATATCAATTTAGACTCCTGGGATGTGGTGGTGAATCTGGAGCTCGAGCAGAAAGT
TTCAATTTCTCTTGC--GAGAGGAAGGAAGATGGATAGCATCCCGTTGGATTAGATCACGCCGATTAGCAGCAA------
--TAAGTAGACAAATCTCTTTCCAACCCACTTGTTTGACTTCCGCGCGGCGCCACCACCACCCAGACCCGAGGCCCCCCC
GCCGCCTATATATGCCGCCAAACCCGACGGCCACCACCCCAGAGCAGTAAACTCCGCTACAGCACACACAAACCAGAGAC
CACACAGGCAGCCAAGGAACGTGAGATCGGCCG----------------------------GACGGAGATGGGCGCGAGC
CTCCTGCAGGCGGTGGCGGCGCTGGTGAGCACGTGCACGCGGCGGCTGCAGCGGGCGGCGAGGAGGATGGGCGCCGGCAA
CGGCAACGGCAAGCCGGCCGTGGCGCCGTGGAGGAAGGCCTTCTCGCTGCCGACGGGCAAGGGGAAGGCGGCGGGGCGGG
A---GGAGGAAGAGGGCGGGCTGTGGAGGAAGGAGATACTCATGGGCGAGCGCTGCCAGCCGCTGGAGTTCTCCGGGGTC
ATCTACTACGACGCCGACGGACACCGCCTCGCGCAGCCGCCCCGGTCGCCCATGCGCAGCCCGCTCCCGGCGTCCTTTAA
GCTCGCTGCCAACGCCGGCGTCTGCTAGCCAGCGTCCGTGCGGAGGCA---CTCCTCCTCCTCCTCGTCCTTCCTTGGGC
CGCGGCTTGAGCCGAGCAGAGCGGAAAGATGGCGAAGCTTGCTCTGTGTTTTGTCCGGTGAGAGAGGCAGAGTATTCGTG
TATATGTTGCTTCTTCTTAGTGCTCTGTTTGCTTTTCTTTTTTCATTAATGGTCTTGTAATG---ATAGGAATTATAAAC
TA---TACTTTCCTGCAAAATTTGGTGTTGTCTGAGCAA--------------AC-----------CTGCTTGTGGGAGT
TGATCATCTAGGCAAGTTATTCTC-------------------------------------CTTTAGAAATCCTCATGAT
TTATGTGCTAGATTTTTTTTTGACCAAAATGATTTATGTGCTAGATTGATCAGCGCAGCGTGAATGTTAAGACTA---TT
TTCGCTTTAATTCTACCTATAAGCCAGGTCACATGAGTCCAAACGCCTATTTGTTCAACGAACCGTGCCGTAAATATTGC
ACCGTTTCCTTGTGTGCTCATTTCGTTCTGCCTGTTATATGCCTCTCTCTTTTTGCGGGATAATAATAATTTGTAGTCTT
ACTCAAGTATCACGGTTACAATCATTTTGGTGTCTCACCCATGTCATGACATGGGTTTTTAAGAACGGTATGTAGCCATT
AGAAGGGATTTTAAGAACCTGTGTACATCGGAACCTACTTCATAAAACTTAGCCAAAAAGACATGCAAGTTCTGCAAAAT
ACGACAAAAGATCACACACACACACACACACACACACACACAATAATTA-------------------------ATAAAT
GAGAAACTTAAGATGTA---------------------------------------------------------------
--------------------------------------------------------------TCATTTTCAAAAAGAAAA
CCATCCAGGTCAGAAATGGTCATATTACTTAACGAGTTAAATACACTACAGGTGCCCTAACTTGTCCGGCGCGATCAGTT
TGGTGCCTAAACTTGAAAAATACACAAAAGTGGTGGAGTAACTTGTCTAGGCATTCAAATACGGTGCCTCTAGAGGTATG
CCGCCGTATCAAGTGCCCGTGGGGCATGTCAGCGTGTCGCTTGGCCACATGTCCGTGGCTGCGGGCGTGTTGTGAACTGT
GCGTGTAGTTTTTTTACAGAAATGCCCCTGGATTTTAGTTAATTCTTGGAAAAAATCGTTACGCATGCTGGACGCAAGCT
GTTTTTTTTATGGAAACGCGTTTGTACTTTAATTAATTCTCACAAAAATATAAACACAAGCTGGCATGAAGAGAATTCAA
ACCACAGACATCCTGGTTGCCTAACAAACAAGTGGACCGAGAGGCCACACTTTGGTTTACATTTAACTGCTAGCTAGCAA
CTTATATGCACGATTCCGCGTATTGCTTTGCACATATTTTTTGAGTGAAGTTTCTGTTTAATTTTCATGATACATAAATT
TTCCTATATGGAAAAATAAAATAATTATCAATCTGCAATTATTGTTTATTTTATATCTTTACTCTATTTTCATTATTGTG
TACCTTGAAGAGATAAACATGAAATTTTTCTAAAATTTATGTGGACATAAAAAGTTGAACGTATATGAAAAATTATTGTG
TAAATTTATGCATCTTCATTGAGGACCATAAGCACGAACAATTACTGTGTATCTTCATTCTACTTTTAAAATACACAATT
ATTGAAAATTGAAAATATTGTATTTTAAAAACTGTTCAACGTGTATTAAATATTATTGTGTGACAATAATAAATTCCAGA
AATGTACTAACATGAGCGTGTTTGTAGAAATTTAAGAATAATATTACACAATATTTTTTAATAGGCATTCAATATTTTCA
GAAAACACGGTGAACATTTTTTAAAATAATATGAAAATGAAAAATGAACATGAACGTGAACGTGTCTTTCAAAATGTGCT
CACCATGTTTTTAATAACTTTCAACTCTTTAATTCCACATCAATTTTAGAGTTTGTGTTTATCTCTTGAAAGTACACTAT
AATGGAAATAGAATAGAGATACAAATAAACAAAATTATATATTGATAATTATTTTTATTTTTTCACATGGAAAATTTTAC
GTATCATGAAAACTAAACAGAAACATCACTCGAAGAAAGACAAGATAGTAACTTGGAATAAATAAAAAGAAAATTACTCC
AGTAGAAGCATATGCAGAGCGATACGTGCAATCATCTATATAAACTGCTTGCTGATAATTAAGCGCAAACCAGACCGTGG
CCGCCTGGTCCGCTCGATTGTCAGGCAACGACATATCCCATGTTCGAAGTCCCTGTACGCTGACTTCCTGGTATTTTTTG
CGAGTATTAATTAAAATCAAGGGGTATTTTTTGCGAGAAGTAATTAAAATCCAGGGGCATTCCTGTAAAAAAACAACATG
CATAGCTCACAACGCGCGTAGGCAACCACTGACATGTGGCCCCGCGACAGACTGGAATGCCACGCGGGCACTCGATACGG
CGGCATACATCCAGAGGCACCGTATTTGAACATCCAGACAAGTTACGACATCACTTTTGTGTATTTTTCAAGTTTAGGCA
CTAAATTGACCGCATCGGATAAGGTAGGGCACCTGTAGTGTATTTAACTCTTACTTAAACATTGCATGTGCAAGTTTCAA
CTCAATATGTAGACGAAATTACTTCAAATTGCATGTGTAAGTTTCAACTCAATATGTAGACGAATG--------------
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>chr7A_99
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-------------------TGCCGCCGCAATGTGCAATGCTACGCTAATGGATTTGCGCATTTTAGTCGGCTCACACAAA
ATCGAAAGCGACAGGCGTTTAGCGATATGGCACTTGAAAGGGCACGAAGATTTGTTTAATTAATTCGGGGCAGGGTCAAC
CAGGAAGAAATGCGGGAGTTGTCAAAAAAACAAGAGGAAGAAATGCGGGAGAGGTTATCTTGCAGGGTTA--ATGCCGCG
TGATGATCATCTTGACGCCTTCTCGCTCTTCACAAATCACAAGAGCCGTAAAATTGGAGCTCAAATGCGTACGTGAACAC
AGACCTGATCACATCAGATGAGATGAATTATTGCCTTTTTGG-TTTGTCCCTGTCCAAATCCGCTGACGGACGAGCCA-G
GGTTGCCATGCCAAAGGTCAGCCGTCATCTTCATCACCATATTGTATAGAAAAATATATGGAAAACATGATTCGTTTTTT
TATGGAAAACTAACATCATTGGTCAGACAT--------------------------------------------------
---------------------------------------------------------ATCATAGAGGATACTGTGGATCA
TGGTAGACGGAAACTCCATGGAAGAATATCAATCA-TACGCCGGCGATACGGCAGTGAATCTGGAGCTCCAGCAGAAACT
TTCTCTTTCTCTTGTGAGAGAGGAAGATGGCATTC---CATCCGTTTGGATTAGATCGCGCCGATTAGTAGCAAAATTGA
ATTAAGTAGACAAATCTCTTTCCAACCCACTTGTTTGACTTTCGCGCGGCGCCCGCCACCACCACCCCCGAGCCCACCCC
GCCGCCTATATATGCCGCCAAACCCGACGGCCACCACCCCAGAGCAGTAAACTCCGCTACAGCACACACAAACCAGAGAG
ACCACACCAGAAG---------GAGATCGGCCGCCCAGTTCAAAAAAAAAGGAGATCGGCCGCCGGAGATGGGCGCGAGC
CTCCTGCAGGCGGTGGCGGCGCTGGTGAGCACGTGCACGCGGCGGCTGCAGCGGGCGGCGAGGAGGATGGGCAG------
------CGGCAGGCCGGCCGTGGCGCCGTGGAGGAAGGCCTTCTCGCTGCCGACGGGCAAGGGGAAGGCCGCGGCGGGGC
C---GGAGGAGGAGGGCGGGCTGTGGAGGAAGGAGATACTCATGGGGGAGCGCTGCCAGCCGCTGGAGTTCTCCGGGGTC
ATCTACTACGACGCCGACGGACACCGCCTCGCGCAGCCGCCCCGCTCGCCCATGCGCAGCCCGCTCCCGGCGTCCTTCAA
GCTCGCCGCCAACGCCGGCGTCCGTTAGCTAGCGTCCGTGCGGAGGCG---CTCCTCCTCGTCGTCCTCCTTCCTTGG--
----------GCCGAGCAGAGTGGAAAGATGGCGAAGCTTGCTCTGTTTTTTGTCCGGTGAGAGAGGCAGAGTGTTCGTG
TATATGTTGCTTCTTCTTAGTGCTTTGTTTGTTTTTCGTTTTTAC----TGGTATTGTAATGGTAATAGGAATTATAAAC
TACAGTACTTTTCTGCAAAACTTGGTGTTGCCTATGCAATTTTCTTTGATTGCAAAACTAGGTGCTCTGCTTGTGGGAGT
TGATCAGCTAGGCAAATTATTCCATGGAGAATTCTTTTTTCTTCCAGACTACCCATATTTTCTTTAGAAATCCTCATGGT
TTGTGTGCTAGATTGAT--------------------------------------CAGCGTGAGTGGTAAGATTAATATT
TTCGCTTTAGTTCTACCTATCAGCCAGGTCACATGAGT--------CTATGTGTTCAACGAACCATACCGTAAATATTGT
ACCGTTTCCTCGTGTGCTCGCTTTGTTCGGCCTGTTTGG-----------------------------------------
-----------------------------------------TGTCATGACATAGGTTTTTTAGAACGATATTTAGCCATT
AGACCGGATTTTAAGAACCTGAGTACCTCGGAATCTACTTCATAAAGCTT-------------------------AAAAT
AGAACAATAGGTCACACACGCACGCACACACACACTAATATTTTTAAAACAATTCGACAATTCATGGCCAGAGTATAAAT
GAGAAACTTAAAAT------------------------------------------------------------------
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--ACCCAGGTCACAAATGGTCTTATTACTTCAA-----------------------------------------------
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-------------------------ACATTGCATGTGTAAGTTTCAACTCAATATATAGA--------------------
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>SNPs
-----------------S----S------------S-------S--S----------S---------------S-----S
-SS-S-------S----SS----------------------S--------S---------S-------------S-----
--------------S-------------------------------S-------S--S----------------------
------------S------------------------------------------S--------------SS--------
----------------------------------------------------------------S-S-------------
------------------------------------------S-----------------------------------S-
----------------------------------------S---------------------------------------
----S----------------S-------------S------SSSSSSSSS-SS-SSSS-S-SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------S--------------------------
------S---S--------S-S------------S----------------------------------S-S--------
-------------S--------------------------------------------------------------S---
---------------S-------------------------------S---------S----------------------
-----------------------------------------S----------------S----------------S----
--SS--S-----------S-------S-----------------------------------------------------
-----------------------------------------------------S-------S------------------
------------------------------------S----------------------------S----SS--------
-SSS-----------------------------------------------------S------S---------------
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------------------------------------S-----------SSS-----------------------------
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---------S-----------S-S------S-----SS------------------------------------------
---------------------------------------SS-----------S---------------------------
-----S------------------------------------------------------------------S-------
-----S---S-S--------------------------------------------------------------------
--S--------------------------------------S--S--------------------------------S--
------------------------------------------------S---SS-S---------------------S--
------S--------------S-------------SS-------------------------------------------
-----S-------------------S----S----------------------------------S--------------
-S-------------S-------S-S------------------------------------------------------
------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
-----------------S--------------------------------------------------------------
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------------------------------------------------------------------SSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_740
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CAGTAGGCGGGAACTCCATC------------------------------------------------------------
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>reverse_2446
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---------------------------------------------TTGGGACGGAGGGAGTATCA---------------
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