>input_sequence_83085
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----------------------------------------------ATGGAGGTCTCCAAGATCAAGATGCCAGGCTTGT
GCTTGCTGCTGCTCATGCCACTCCTGTTGCTTCCTGGTGAGCCTTCCCTGAAATAGTTATCTGAAGAATATAACGGTTTC
TCGGTGTTCTATTCTTTGTTTGATGCTGCTAAGCAAAATGGTGTCCTTGTTTTGACTGCAGGATCTGAAGCAGGCGATTA
TTGCAAGTGGTTCAGCAAGACCTACACTACTTTTCACTGTGCGGACAACCCATGCGCTGAGCACTGCCGCAACGAGGGCT
TCCCTCGTGGGTGGTGTGAGTTCGTCGCCTTAGAACCTCTCGCCTTAGTCTGCTTCTGCAGGAAACCCTGCTGA------
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>chr5A_1_TraesCS5A01G046500
GTTGGTGATGGCGAAGCCCTAGGCGTCATCTCCTTGTTGAAGGAATCATCGAGGTCATTCCGCTACCTCCAGGAGAAACC
CTTGATCAGTCGACCGGATGATGATGGCTCTCATGTATCGTTCCCCCCTTGGGGGCGTCATTCTTGGAGGTGTTCATCGG
CTCGAGGGACCAGTGGACGGTTTCAGTGGTGGAGCAGCGTTGCATCTGACGCATCGACGACGTGGAGTCTCAGCGGCGTA
GCACAACAGGGTCTTGGCGACGAATGCGTGATAATAGACTTGCGTAGGGAGGTGGCGTCGTTAGCCGGCGTGGCGGCGTC
GACGGCA-GCCTGGCAAGGTCAATGCATTGATACCAATTCTGAAGATGGATCGGCGAAAGATGGTGGTGGCAGCCTCTGG
AGCGTGCTTATGCGGTGCCCACTGAGAGCCCACTGGACTGGTTTATCACCCGCTGTTGGGCAGATTGGTGTGAGGTATGG
GCAGGCGGCCCTGATCATGTGCACCACCTTCATCAGGTTGGTAGGAGTAGCGACGGATGTTGCCAGCAGTGTTGTCA---
GGAAGGTGGCTTCAGACTAATTGTTGTATTACTTTGTAAGGCTTTGTTGGATAATTAATAAAA--AATGGTTGTGTGCAT
CGCTGCATGCAGAGGCCGGTGGTTATCCTTCTTTTTGGAAAAAAAAATGGGTCAGCTCTATCTAGACCAAAAATTCCAGC
ATCTGCCAATGTATACAAAACCGAGCTGCATCATCCCTATGTTTGTTTTCATCCATAAAAGTCTCAAGATTGCTATGAAC
TTTGAAGGTGCAACACATGATTACATTATCCAGAAAGAAATGCATCTTCAAGATATAATTGCATCATACTCTCTGTTTTC
TACATAGTTTTTTTATATGGTCTGGCCATCCATGACTATAAGAAGAGAAGGCACTAACCTATTTGAATCTGTACCGTCTC
CTCTCCCCTAGCTTCATTTCTCCCTTGGATGTTTATTCTTGAAGACATGGAGGTCTCCAAGATCAAGATGCCAGGCTTGT
GCTTGCTGCTGCTCATGCCACTCCTGTTGCTTCCTGGTGAGCCTTCCCTGAAATAGTTATCTGAAGAATATAACGGTTTC
TCGGTGTTCTATTCTTTGTTTGATGCTGCTAAGCAAAATGGTGTCCTTGTTTTGACTGCAGGATCTGAAGCAGGCGATTA
TTGCAAGTGGTTCAGCAAGACCTACACTACTTTTCACTGTGCGGACAACCCATGCGCTGAGCACTGCCGCAACGAGGGCT
TCCCTCGTGGGTGGTGTGAGTTCGTCGCCTTAGAACCTCTCGCCTTAGTCTGCTTCTGCAGGAAACCCTGCTGATGATGC
TTGTGAAGTAATAATACTGTTGTGTGTTTATAAGGAAGTGTACATGTG-AACTTCTATGTCGTATTTGCCGTGAAGAGCA
GAT---------------------CAGTATAATAAAGGTGAAGTTGCAATAGTCTGCCTCCCTTTTGGGTTCATCCTGAT
GAGCAGGAATCATATTAAGCTCTTGATGGTCCTCTCTGCTGATGAAATCTTTTATTGGTGTGAATAAGTAGAGACTGATG
CCTTTGTCTCTTGTATTATTGGAATCAAAACAGAGCATGCTACAAATGCAGAGATATGGACATAGCTGCTGTGACATGAT
TATGTCTACTCGATTGTTTGTATGTGAATCCATCTCTAGTGTTACTTGAACATCCAAAGACCAATCTCCAGTAGACACAA
ACATTAAAAGTATTTCAATCTGGTTATAACTATCT---------------------------------------------
--------------------------------------------------ATTATGCAGTGAGATCATACCATAGTGTCT
TCCTTCACCTGGAACTGTTGGTGATTAGCACTTCACCCCCTA--------------------------------------
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-------------------------------------------------------------------------ATATTCT
CTCTTAGAAGGTGATTAAGAGGGACCATCTTAAATTCTCGCTTATTTCTTAAATTCTCTCTTATTCTGGTCAATACTTTC
TTAGAAGGTAATTAAAAGGGACCATCTTAAAATCTCTCTCATTCTGCTCAAATGAGGAGTGTGTGACT--GAGAGGAGTA
TAAGCTGTCCCCGTATCTTTTCAGCATGTGGGCTTTAAATGGTCCATATATTTTCAGTAAATTCCCAGCAGATTGCTTTC
CAATGCACAGCACAACATTTTGGATTACCAAGCAGCAGGTAAATGCATCCTAAGGTCTCATCCTCCATGGCTGGCTATAA
GAAGAGACGCCAATCACCAGTTTGGATCTGCGCCTTCTCCTAGCCCCTTCCTTCCTTCCCTCCCCCCTTCATTCCTTCAT
TCCTTGGAGACATGGCGATGGCGGCGCCCAAGCTCATGGTGCCAGGCCTGTGCCTGCTTCTGCTGATCATGCCGCTCCTC
TTGCTCCCTGGTAAGCCTTGCCTG
>chr5B_58
TTCCC----------------------------------------------------------TACCTTCAGGGGAAACC
CTTGATCAGTCGATCGGATGATAGTGGCGCTGATGTGTCGTTCCCCCCTTGGGGCA-TCATTCTTGGAGGTGTTCATCTG
CTTGAGGGACCAGTGGATGGTTTCAGCGGTGGAGCAGCGTTGCATGTGATGCATCGACGATGTGGAGTCTCGGAGGCATG
GCGCGGCAGGGTCTTGGCGATGGATGTGTGATGATGGACCCGCATAGGGAGGTGGCGTTGTCTGGTGTCGTGGCAACGTC
GACGGTAGGCCTGGCAAGGTCAATGCATTGATACCAATTATGAAGATGGATCGGCGGAAGATGGTGGCGGCAGCCTCTGG
AGCATGCCCATGCGGTGCCCGCTGATAGTCCACTAGACATTTAGATGATCGGTG----------TTGGTGTGAGGTCTTG
GCAGGCGGCTCCGATCATGTGCACATCCTTCGTCAAGTTGGTAGGAGTAGCGACAAATGTTAC------------CA---
GGAAGATGGCTTCAGACTAATTGATGTATTATTTTGTAAGGCTTTGTTGAATAATTAATAAAA--AATGGTTGTATGCAT
CACTCGATATAGAGGTCGGGGGTTATCCTCCTTT-----AAAAAAAATAGGTCAGCTCTATCTAGACCAAAAATTTCAGC
ATCCGCCAATGTATACAACACCGAGCCGCGTCATCCCTATGTTTGTTTTCATCCATAAAAGTCTCAAGATTGCTTTGAAC
TTTGAAGGTGCAAGACATCATTTCATTATCCAGATAGAAATGCATCTTCAAGATATAATTGCATCATACTCGCTATTTTC
GACATAGTTTTTTTATATGGTCTGGCCATCCATGACTATAAGACAAGGAGACACTAACCTATTTGGATCTTCACCGTATC
CTCTCCGCTAGCTTCATTTCTCCCTTGGGTGTTAATTCCTGATGACATGGAGGTCTCCAAGATCAAGATGCCAGGCTTGT
GCTTGCTGCTGCTCATGC--------------------------------------------------------------
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>chr5D_464
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----------------------------------------------------------------TTGGTGTGAGGTCTAG
GCAGGCGACTCCGATCATGTGCACCTCCTTCATCAAGTTGATAGGAGTAGCGACAAATGTTGC------------CAGAA
GGACGGTGGCTCCAGACTAATTGATGCATTACTTTGTAAGGCTTTGTTGAATAATTAATAAAAGAAATGGTTGTATGCAT
CGCTCGATGCAGAGGCCAGGGGTTATCCTCCTTTTCT---AAAAAAATGGGTCAGCTCTATCTAGACCAAAAATTTCAGC
ATCTGCCAATGTATACAACACAGAGCTGCATCATCCCTATGTTTGTATTCATCCGTAAAAGTCTCAAGGTTGCTTTGAAC
TTTGAAGATGCAACACACCATTGCATTATCCAGATAGAAATGCATCTTCAAGATATAATTGCATCATACTCTCTGTTTTG
TACATAGTATTTTTATATGGTCTGGCCATCCATGACTATAAGAAGAGAAGGCACTAACCTATTTGAATCCGCACCGTCTC
CTCTCCGCTAGCTTCCTTTCTACCTTGGGTGTTTATTCTTGAAGACATGGAGGTCTCCAAGATCAAGATGCCAGGCTTGT
GCTTGCTGCTGCTCATGCCACTCCTGTTGCTTCCTGGTAAGCTT------------TTACCTGAAGAATATAACGGTCTA
TCAGTGTTCTATTCTTT----GATGCTGCTAAGCAAAATGTTGTCCTTATTTTGACTGCAGGATCTGAATCTGGCGATTA
TTGCAAGGTGTTGAGCAAGACCTACACTACTTTTCACTGCACGGACAATCCATGCGCTGAGCACTGCCGCAATGAGGGCT
TCCCTCGTGGGTGGTGTGAGTTCGTCTCCTTAGAACCTCTCGCCTTAGTCTGCTTCTGCAGGAAACCCTGCTGATGATGC
TTGTGAAGTAATAACACTGTTGTGTGTTTGTAAGGAAGTGTATATGTG-AACTTCTATGTCGTATTTGCCGTGACGAGCA
GATTAGCATAGAATTCACCTAAGTCAGTATAATAAAGGTGAAGTTGCAATAGTCTGCCTCCCTTTTGGGTTCATCCTGAT
GAGCAGGAGTCACATTAAGCTCTTGATGGTCCTCTCTGCTGATGAAACCTGTTCTTGGTCTGAATAAGGAGAGACTGATG
CCTTTGTCTCTTATGTTATTGGAATC--AACAGAGCATGCTACAAATGCAGAGGTATGGACATAGCTGCTGTGACATGAT
TATGTCTACTCGATTGTTTGTATGTGAATCCATCTCTAGTGTTACTTGAACATCCAAAGACCAATCTCCAGTAGACAAAA
ACATTAAAAGTATTTTGATCTGGTTATGATTATCT---------------------------------------------
--------------------------------------------------ATTGTACAGTGAGATCATGCCACACTGTTT
TCCTTCACCCGGTACAGC----GATTAGCTCTTCAACCCCTAATCTT---------------------------------
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>chr5B_1048
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-------------CATGCCACTCCTATTACTTCCTGGTGAGCCTTCCCTGAAATAATTATCTGAAGAATATAAAGGTTTC
TCAGTGTTCTATTCTTTGTTTGATGCTGCTAAGCAAAATGGTGTCCTTATTTTGACTGCAGGATCTGAAGCAGGCGATAC
ATGCAGGGTGTTGAGCAAGACATACACTACTTTCCACTGCGCGGACAATCCATGCCTCGAGCACTGCCACAAGGAGGGGT
TCCCTCGTGGGGAGTGTGAGTTCGTCGCCTTAGAACCTCTCGCGTTAGTCTGCTTCTGCAGGAAACCCTGCTGATGATGC
TTGTCAAGTAATAACACTGTTGTGTGTTTATAAGGAAGTGTATATGTCAAACTTGTATGTCGAATTTGCCGTGACGAGCA
GATCAGCATAGAATTCACCTAAGACAATGTAATAAAGGTGAAGTTGCAGTAGTGTGCCTCCCTTTTGGGTTCATCCTGAT
GAGCAGGAATCATATTAAGCTCTTGATGGTCCTCTCTGCTGATGAAATCTGTTCTTGGTCTGAATAAGGAGAGAC-----
---------------------------------------------------------------AGCTGCTGTGACATGAT
TACGTCTACTGGAGTGTTTGCATGTGAATCCATCTCTAG---TACTTGAACATTCAAAGACCAATCTCCAGT---CATAA
ACATTAAAAGTATTTCGATCTGGTTATAATTATCTACTCCCTCCATCTCAAAATAAGTGTCTCAAGCTTAGTACAACTTT
GTATTAGAGCTAGTACAAAGTTAAGACAGTTATTTTGGGACGTAGGGAGTATTATACAGTGAGATCATGCCACGCTGTTT
TACTCCACCCGGTGCAGC----GATTAGCACTTCATCCCCTAATCTTTGTGTGAGGCATGGAGCAGTAAAGGGAAAATCA
GGAGGATATGTATCCATGAAGTGGACAACAGAAAAAAAAAGCACAGTAACAAAATAATAGCACAATAGTGTTCTAACTAA
ATTGTTGTATAAATAAGAAAAACAGAAAACTGTACAAGTTCTGGCCGCTCTGAATAATAATATTGATAACAACAACAATA
ATAATAATACTTGAATTTATTAATATTATGAACACATTCGAGTACACCACAGCATTAATTTCTTAACCCAGACTTAATTA
CATCGTCTTGTTCTTCGTTTACAGACCATCCATGCCTATGACAAGAGATCACTTACACTTTACTCCGCATTTCTTTTTGC
TAATCTTTACTCCGCATATTAGGTTTAAATTTATCAACATTTACAATACCAAATAAATATATTATGAAAATATATTCCAT
AATAGATCTAATTATATTGATTTGGTATCATGAATGGTATTTTTCTACGAAAAATGTATTTGGCAACCGTGTGGCAGATT
GCGAAACTGCCACACGCATCCAGCGCCGTCAGTTTCCTCCCGATCTCCTTCCTTTCCCGCATGTCCTCTTGATTTCTTTC
CTTTCTCGCACGCCTCCCGATCTCCTTCCTTCCCCGCACGACCTCCCCCGATTTCTTTCCTTTCCCGCACGCCCTCCCCG
ATTTTATCGGGCACACCCGCTCGTGCCTTCCTAATTTTTGTAATCGTCAATTATGGCCCACGCGCCTTCCCGATTTTCAG
CAAAAATAATGCTTGGACTAGGATTTGATCTCCGTTCTGCAGGTAATCAACAGATGGAGCTAACCACCTCACCTATGACA
CTCATTGTTGAGCAAGCTAAGGGAAATACTGTTTTTGACATGTTCGTGGTAACTTTGATCATTGGGAATAAATTTGTTGA
ACCCGCCCCCCGGTAATTTCTGTAAATAGCACGATAACATTCACGCCATAGACCTGATAATTTAGATACAAACATCATGG
TAACTTTAACCATTGGGGAAGACAAATGTGAAAAGATACCCGATAATTTATGTGTAAATAGATGATAATATATGCAGCGC
ACATCTGATAACTAAGGTAGAAACACCATGGTAACTTTGACCGTATGGATTTTTTTTTGAAATGATACTCCGGCATCTAC
TGTGTAAATAGCACGGTAGGATACCTCCCTCCCCTGGCATTTTTATGTGTAAATAGCATGAAAACATATGCACTGCGATA
ACTAAACATCATGATAAGTTTTTGACCCGTGGGGGGAGGGGGATTTGCTAAAACATACCCCTGATAAATTTTGTGTAAAT
AGCATGATATTTTAAGCACTACAGGCTTGATAGGTTACCTAGAATCACCATGATAACTTTTTGTCCCGGGAAAAAGTTGT
TCAAAACATCCTCAATATTTTTTGTGTAAATAACATGATAATATAAGCACCGATAACCGATAACTTGCAATATAAACATG
ATGGTAACTTTTTTATCAAAGGAAACTAAGTTGTTAAAAACATACACTCGCCCCGCGCGTGGGCCTCTTGGATGAACAAA
ACGCATGGTGTGCCACGAGAAAGTCACATAATGTTTAGTGTCATGAGGGGCACACGTGCTATAGGCGTGATAAGTTACGC
AAAAACTTCGTGGTAATTTTTGACCTATGGAAAAAGCTACCGAGACACACCCAGGTTTTTAGGTGCAAGTACCATGATAA
TATACGAACTGTAGACCCGGTAACTCATGTACAATCCTTCATGATAACTTTGACCGGGGGGAGGTTGATGTACATATACC
CTGATAACTTATGTGTAAGTACCACAGTATTTTACACATCGAAGACCTTATAACTTGTGTACAAAACACAGTGGTAACTT
TGAAGGGATGTAGTTGTTGAAGCATAGATACCTGGTATATTCTATGTAAATAGCATGGTAAGTTATGCAACACAGGCCTG
ATAATTTGCATACAAATACCATGATAACTTTGTCCTGAGGAGAAATCATGTGGTAGACGTGAAGAAGTGACAATTTTCTC
AGGGGTGGGCGTCTGAGATGTGCGGGAGAAGCAGGTTTCTCGGGCGAGCCTACAGGGTCGTTTCAGAGTTGGCGAGGTCA
AAGGACAAGGAATCGTGTGGTACTTTAAAATGAAAAAAGTAGAGGTGTGGCAGTTTTGTTTATATGGCACACGTGTGCCA
AATATCACAGTCCATTTTTCTATAATCTTTATCAAATTTCATAAAATTTGACTCAAGGCAAATGTAAGATGCAAGGTAGA
AAAGAAACATCATCTGGTTTTCTCTGCGCTTACTATGCGGTGTTTCTTCTGGGAGATGTGGGGGTCTTCAAAGTGCTTAT
GCTTCCTCAAGTCCATCCATCCATCCACTGGTCAAATGAAGAGTCTGTGAGAGGAGCTGCCCCCCAGAAGTTGCGCAAAT
CAAAGAAATAAAAGACGGTGATACTAAACGTGTGTTCCAGATATATTAGTAGCACTTCACCCCCTAATCTTTGTTGGAGG
CATGCAGCAGTAAAGGGAAAATCAGGAAAAAAATGTATCCATGAAGTAGACAAGAGAAAGAAAAAAACATAGAAACAAAA
TGAAAGCAAAAAAGTGTTCTAATTAAATTGTTCTAAAAAGAAGAAAAACACAAAACTGCACAAGTTCTAGCCGCTCTGAA
TAATAATAATAATTGAATTATTAATATTATGAATACATTTGAGTACAACACATAATTAATTGCATAACCCAGACGTAACT
ACGTCATCTTCTTCATTTTCAGACAATCCATGGCCACGACAGGAGATCACTTATACCCCCTCTGTTTCTTTTTACTCGGC
ATAGTATTAGGTTTAAATTATCAACATTTGCAATACCAAAAAATACAGGAATGAGGAGTGTGTGAGAGGAGTAATATTCT
CTCTTAGAAGGTGATTAAGAGGGACCATCTTAA-------------------ATTCTCTCTTATTCTGGTCAATACTCTC
TTAGAAGGTAATCAAGAGGGACCATCTTAAAATCTCTCTTATTCTGCTCAAATGAGGAGTGTGTGACTGTGAGAGGAGTA
TAAGCTGTCCCCGTATCTTTTCTGCATGTGGGCTTTAAATGGTCCATATATTT-----------CCAGCAGATTGCTTTC
CAATGCACAGCACAACATTTTGGATTATGCAGCA----GTAAATGCATCGTAAGGTCTCATCCTCCATGGCTGGCTATAA
GAAGAGGCGGCACTCACCTGTTTGGATCTGCGCCTTCTCCTAGCCCCTTCCTTCCTTCCCTCCTCCCTTCATTCCTTCAT
TCCCTGGAGACATGGCGATGGGGGTGCCCAAGCTCATGGTGCCAGGCCTGTGCCTGCTGCTGCTGATCATGCCACTCCTC
TTGCTCCCTGGTAAGCCTTCCTG-
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----S------
-------------S--------SS----S--S----S-----------------SSS---------------------S-
--S--------------S--------S------------------S---S----------S----------S-S---S-S
--S-SS--------------S-S---S-----S--S---SS--S--------------S--SS-SS-S------SS----
-----S---------------------------------S----------------S----------S------------
---S---SS-----------S----S--S-----S---SSS-SS--S-S-S-SSSSSSSSSSSS------------S-S-
---------S-S-------------S---------S------------------SS-------SSSSSSSSSSSS-----
-----------------------S-------------------------S------------------------S-----
----SS-------------S---------S-----SSSS------------------------------------S----
------------------S-------------------------------------------------------S-----
------------------S---S-----------S---------------------------------------------
-----------------------------------------------------------------------S--------
------S---------------------S---------------------------------------------------
-------------------------------------------------------S------------------------
--S---------------------------------------------S-------------------------------
-------SS---S--------------------------S--------S-----------------------S-------
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--------------S---------------------------S-------------------------------S-----
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--------------------------------------------------S--S-----S--------S-----------
------------S-S-----------SS-------------------------S--------------------------
-----------------------------------------------------------------------------S--
----------------S------------S--------------------------------------------------
-------------------------------------------------------S------------S---S-S---S-
---------S--S--S-SSSSS-------------S--------------------------------------------
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---------------------------------SSSSSSSSSSSSSSSSSSS-------------------------S--
------------S--S-----------------------S----------------------------------------
----------------------S------------------------------SSSSSSSSSSS----------------
---------------------------SSS----SSSS-----------S------------------------------
------S--S--S-----S--------------------------------------------S----------------
---S-----------------S--S---------------------------------S--------------S------
-------------------S-SSS
>forward_74
------------------------------------------------------TCATTCCGCTACCTCCAGGA------
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>reverse_1941
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--------------------GTGATTAGCACTTCACCCCCT---------------------------------------
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