>input_sequence_83076
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----------------------------------------------------------------------------ATGG
GGAAGGAGTTCGGGAGCATGGAGGAGTTCTGGGGGTTCTACCTGGGCCAGCACTCGAAGCCGGCGACGCGGCGCTGGCAC
TTCGCCGGCACGCTCGCCTCGCTGGTGTGCGCGCTGCTGGCGGCCGCCACCGGCCGCGCCGCGCTCCTGGTGGCCTGCCC
TGTGCTCGGCTACGGCATGGCCTGGTACAGCCACTTCTTCGTGGAGGGCAACCGGCCGGCCACCTTCGGTCACCCCGTCT
GGTCCTTCCTCTGCGACTACCGCATGTTCGCCCTCATCCTCACCGGCCGCATCGACGCCGAGCTCGCCCGCCTCCGCGTC
CACCC---------GCGCCTCGCCTCCGACTGA-----------------------------------------------
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>chr4A_1_TraesCS4A01G091600
AACGAGACCAGGAAGGGATGGGAAGATGGCAGGTCTGGTCCCTGTTTTGTACGTGAGCTCGTGATAGCAATGAACCTTGT
GACATACTACTCTGAAGAGGTGGGTGGAGCAA-------ATGGGCCTAAGAATGAAACGCTGGTTAGTTTTGATGCTGTC
CTGTGGAAGCAAGGACATATCCAACCCTCTCCGTGTGTGTGTTTGTACGGTGCGGCGGTATTGTTGCTGGTCTCTGTGTG
CTGATTTTGTTTGCTATACATACGGCTAGGCCATTCAATTCATTGTTTACATGGGTGGATAGGAATTTGGGACACTCCAT
TCCATCTTGCATGCGCCGTTCTGCCCCACCGGTTATGCTTGGAAGGTTTCGGTTACACCCCGTGCCCAGTTCTTCCATCG
GCTGTGCAATACATCCCATTGTAATTGTATAACTATTTAGCTGTGAAGAGGCTGTTGTAAACTGTAGGCTCAATTTTTT-
-TTTTTACCCCACGATTCTTTTGGTATTGTGTATCG--TATGGTGTGAACTGTGTGATTCAGTAGCAAGTAGTAGTGCTG
TATTTTTTTTATGGTTTGTGTAAATTTTTGTTTTCCGGTGTATCTAGGATACATGAAAATATACCATAGTGAAAACAACA
GGCACCTGATATTTTACTCATTTTTGCCTTCCCTA--------------TGTTCTGATCAGTTAGTTGTTGGCAATAGTT
TGGCTGATACTACGTGAGTGCTCACGTCTGCAGCAATGTTGAGGTCA---------------------------------
--------------------------------------------------------------------------------
-------------------------TATCGCCCTGTCGTGTTCACGCCGCCTAAATTGTGTTGGCCAAAGCATGTGCATC
AGACCGACAAATGCATCAGATTCACCGGATCGTCATTAGAATCACGACTTGTTCAATAAAAATAGGCAGCGCAAGTCGGT
TGGTCGCTAGCCAGCCTCCTT-------ATCTTGAACCCCCACAGAGAAAGCAGTAGGTATACGGACACATCTAGCCAAC
ACACCGCAATACGCAAGCAGGCAACAACCGCAGCCCCAAGCAAACCGAA--------------------------GATGG
GGAAGGAGTTCGGGAGCATGGAGGAGTTCTGGGGGTTCTACCTGGGCCAGCACTCGAAGCCGGCGACGCGGCGCTGGCAC
TTCGCCGGCACGCTCGCCTCGCTGGTGTGCGCGCTGCTGGCGGCCGCCACCGGCCGCGCCGCGCTCCTGGTGGCCTGCCC
TGTGCTCGGCTACGGCATGGCCTGGTACAGCCACTTCTTCGTGGAGGGCAACCGGCCGGCCACCTTCGGTCACCCCGTCT
GGTCCTTCCTCTGCGACTACCGCATGTTCGCCCTCATCCTCACCGGCCGCATCGACGCCGAGCTCGCCCGCCTCCGCGTC
CACCC---------GCGCCTCGCCTCCGACTGACCGATCCGGCCGCCTCTTCGCCGTCCGTGCCGTGCCGTGCCAGCATC
AATCAACCAAT----AAAGATTCCGCG------------------------CACTTGCAGGTGTGTCGGAGCATT-----
---TGTCTACTGAGGTTCCTGGTGTATGTGTACTTGCTGCGCA-----TTTCTCTACGCACACAAAAATACTACTCCCTC
CTTTCCAAAATATAAGAACGTTTTTAACACTACATTAGTGTCAAAAACGTTGTGGGACAGAGGTAGTAGTAGTTCTACCA
TGTGTCTTTGCCTCTCGTGAATTATGTTTGCTCTACTCTAAGGCC---------------TTTCTCTTCTCCTTGGTATG
GGGGCAGTTCTAACACGAACTGGACATACTTCTGATTTATTTTCCTGCACTTCATTCAGTTCCACAACACAGGCTCCCAA
AACGACCCACGAGTTTGACAAGT--AGTAGATAGAACCTCACAAGAATCGCAATAACAAATGGCAGATATACACGAATAC
GCGCCCTTAATTTTTTTAATAGCCGATTTAACCGGAGGTCACACGCATCTGATCATG-----TTGGCTGTAGAGTGTAGA
CCATTGCCCGGCTCAGCTGTCGCTTCTGTTGGGCTTGTCTGACTCCTCCTGATACACCTGAAACAAGCACGAAGCGTGTC
AATCGCCGATGAGAACTGCAGAAATGCCAGCAAAGAAGAGGGAGAGAGGGGGCAGTATCTGTCCTCCTACCGTGTCAGCT
GACGGGATCCACTCGTTTGTGGCGGGGTTTCCCTTGGAGGAAGCATGGCGCTCCGTCGCATCCGGGTCCTCGGAGAGCTC
GAACGAGGCGCCGGCGGGCCTGTCCACCTTGATGAAGCCCGTGCCAGTCTGCACCACGTCCATCGACCACGATTCAGCTC
AGCGGCTCATATAATTCAGAGAAAAAT------------TGCAGAGGAGGAAGGCAGCGACCGTGTGATGCTGCTTGCCG
ACGCAGCCGAGGTCCTTGTAGTACTCCGTCTCCACGAACTCCTCGCCCGCCTTCCCGCCCTCGCACAC
>chr4B_4
---GAGACCGGGAAGGGATGGGAAGATGGCAGGTCTGGTCCCTGTTTTGTATGTGAGCTCGTGATAGCAATGAGCCTTGT
GACATACTACTCTCAAGAGCTGGGTGGAATACATGGGTGATGGGCCTAAGAATGAAACGCAAAGAAGTTTTGATGCTGTC
TTGTGTAAGGAAGGACATATCCAACCCTCTTG--GTGTGTGGTTGTACGGTGCGGCGATATTGTTGCTGGTCTCTGTGTG
CTGATTTTGTTTGCTATACATACGGCTAGACCATTCAATTCATTGTTTACATGGGTGGATAGGAATTTGGGACACTCCAT
TCCATCTTGCCTGCGCCGTTCTGCTCCACCGGTTATGCTTGGAAGGTTTCCGTTACTCCCCGTGTCCAGTTCTTCCATCG
GCTGTGCAATACATCCCATTGTAATTGTATAACTATTTAGCTGTTAAGAGGCTGTTGTAAACTGTAGGCTCAAT----T-
-TTTTTACCCTATGATTCTTTTGGTACTGTGTATGGTATATGGTGTGAACTGTGTGATTCAGTAGTAATCAGTAGTGCTG
TATTTTTTTAATGGTTTGTGTAAATTTTTGTTTTCCGTTGTATCTAGGATACATGAAAATATACCATAGTGAAA-CAACA
GGCACCCGTTCTTTTCATTTATTTTTGAACATGCTATTTGCATTCAATGTGTTCTGATCAGTTATTTGTTGATAATAGTT
TGGCTGATA---CGTGCGTGCTCACGTCTGCAGAGATGTTGAGGTACCAGCGTGCAAAGAGATCACCATGTTTGTTTAAT
CCACTCATCCATAATTCCATATCCCTCTTGGAGGTACCAGCGTGCAAAGAGATCACCATGTTTGTTTAATCCACTCATCC
ATAATTCCATATCCCTCTTGGAGGGCATCGCCCCATCGCGTTCGCGCCGCCTAAATTGTGT-----------TGTGCATC
AGACCGACAAATGCATCAGATTCACCGGACCGTCAATAGAATCACGACTTGTTCAATAAAAATAGGCAGCACAAGTCAGT
TGGTCGCTAGCCAGCCTCCTT-------ATCTTGAACCCCGCAGAGAAG----GTAGGTACACGGACACATCTCGCCAAC
ACATCGCAATTC-------GGCAGCAACCGCAGCCC-AAGCAAACGGA------------------------GGCGATGG
GGAAGGAGTTCGGGAGCATGGAGGAGTTCTGGGGGTTCTACCTGGGCCAGCACTCGAAGCCGGCCACGCGGCGCTGGCAC
TTCGCCGGCACGCTCGCCTCGCTGGTCTGCGCGCTGCTGGCGGCCGCCACCGGCCGCGCCGCGCTCCTGGTGGCCTGCCC
CGTGCTCGGCTACGGCCTGGCCTGGTACAGCCACTTCTTCGTGGAGGGCAACCGGCCGGCCACCTTCGGCCACCCCGTCT
GGTCCTTCCTCTGCGACTACCGCATGTTCGCCCTCATCCTCACCGGCCGCATCGACGCCGAGCTCGCTCGCCTCCGCATC
CACCCGCCGCGCCCGCGCATCGCCTCCGACTGATCGATGCGCCCGTCTCTTCGCCGT-----CCGTGCCGTGCCAACATC
AATCAATCAAT----AAAAATCCCGCG------------------------CACTTGCAGGTGTGTAGGACAGTAGGAGT
ATCTGTCTACTGAGGTTCCTGGTCTATGTGTACTTCCTGCGCATTTCATTTCTCTACGCACGGAAAAATACTATTA----
--------------------------------------------------------------------------CTACCA
TGTGTCTTTGCCTCTCGTGAATTATGATTGCTCTA-----AGGCC---------------TTTCTCTTCTCCTTGGTGTG
GGGGCAGTTCTAACACAAACTGAACATACTTCTGATTTA-TTTCCTGTACTTCATTCAGTTCCACAACACAGGCTCCCAA
AACGACCCACGAGTTTGACAAGTAGAGTAGATAGAACCTCACAAGAATCCCAATAACAA---------ATACACGAATAC
GCGCCCTTAATTTTTT-AATAGCCGATTTAACCGGAAGACACACGCATCTGATGTATGATGTTTGGCTGTAGTCTGTAGA
CCATTGCCCGGCTCAGCTGTCGCTTCTGTTGGGCTTGTCTGACTCCTCCTGATACACCTGAAACAAGCACAAAGCGTGTC
AACCGTCGATGAGAACTGCGGAAAT--------AGAAGAGGGAGAGA-GGGGCAGTATCTGTCCTCCTACCGTGTCCGCT
GACGAGATCCACTCGTTTGTGGCGGGGTTCCCCTTGGAGGAAGCATGGCGCTCCGTCGCATCCGGGTCTTCCGAGAGCTC
GAACGAGGCGCCGGCGGGCCTGTCCACCTTGATGAAGCCCGTCCCAGTCTGCACCACGTCCATCCACCACGATTCAGTTC
AGCGGCTCATATAACTCAGAGAAAAAATCAGTATATCAATGCAGAGGAAGAAGGCAGCGACCGTGTGATGCTGCTTGCCG
ACGCAGCCGAGGTCCTTGTAGTACTCCGTCTCCACGAACTCCTCGCCCGCCTTCCCGCCCTCGCACAC
>chr4D_4
---GAGACCAGGAAGGGATGGGAAAATGGCAGGTCTGGTCCCTGTTTTGTATGTGAGCTCGTGATAGCCATGAACCTTGT
GACATACTACTCTGAAGAGCTGGGTGGAGCAA-------ATGGGCCTGAGAATGAAACGCGGGTTAGTTTTGATGCTATC
CTGTGGACGCAAGGACATACCCAACCCTCAGT-----------------GTGCGGTGATATTGTTGCTGGTCTTTGTGTG
CTGATTTTGTTTGCTATACATACGGCTAGGCCATTCAATTTATTGTTTACATGGGTGGATAGGAATTTGGGACACTCCAT
TCCATCTTGCCTGCGCCGTTCTGCTCCACTGGTTATGCTTGGAAGGTTTCCGTTACTCCCGGTGTCCAGTTCTTGCATCG
GCTGTGCAATACATCCCATTGTAATTGTATAACTATTTAGCTGTGAAGAGGCTGTTGTAAACTGTAGGCTCAAT----TT
TTTTTTACCCCACGATTCTTTTGGTATTGTGTATGGTAT--GGTTTGAACTGTGTGAATCAGTAGCAAGTAGTAGTGCTG
TATTTTTTTTATGGTTTGTGTAAATTTTTGTTTTCCGGTGTATCTAGGATACATGAAAATATACCATAGTGAAA-CAACA
GGCACCCGTTCTTTGCATTTTTTCTGAACAC--------GCATTCCATGTGTTCTGCTAAGTTATTTGTTGGCAATAGTT
TGGCTCATA---CGTGAGTGCTCACGTCTGCAGCAATGCTGAGGTACCAGCGCGCAG-GAGATCGCCATGTTTGATTAAT
CCACTCATCCATA-------------------------------------------------------------------
-----------TCCCTCTTGGAGCGTATCGCCCCGTCGCGTTCACGCCGTCTAAACTGTGT-----------TGTGCGTC
AGACCGGCAAATGCATCAGATTCACCGGACCGTCATTAGAATCACGACTTGTTCAATAAAAATAGGCAGCGCAAGTCAGT
TGGTCGCCAGCCAGCCAGCCTCCTTATCATCTTGAACCCCGCAGAGAAA----GTAGT----------------------
-------------------------AACCGCAGCCCGCCCAAGCAAATAGTAGAGGCGATGGGAGGAGGAGGGGCGAGGG
GGAAGGAGTTCGGGAGCATGGAGGAGTTCTGGGGGTTCTACCTGGGCCAGCACTCGAAGCCGGCCACGCGGCGCTGGCAC
TTCGCCGGCACGCTCGCCTCGCTGGTCTGCGCGCTGCTGGCGGCCGCCACCGGCCGCGCCGCGCTCCTGGTGGCCTGCCC
CGTGCTCGGCTACGGCATGGCCTGGTACAGCCACTTCTTCGTGGAGGGCAACCGGCCGGCCACGTTCGGCCACCCCGTCT
GGTCCTTGCTCTGCGACTACCGCATGTTCGCCCTCATCCTCACCGGCCGCATCGACGCCGAGCTCGCCCGCCTCCGCATC
CACCC---------ACGCCTCGCCTCCGACTGACCGATCAGCCCGTCTCTTCGCCGT-----CCGTTCCGTGCCAACATC
AATCAATCAATCAGTAAAAATTCCGCAGGTGTGGATTCCTCGGGGAAAAAACACTTGCAGGAGTATTTACCTA-------
------CTACTGAGCTTCCTGGTGTATGTGTACTTGCTGCATA-----TCTCTCTACGCACAGAAAAATAA---------
---------------------------------------------------------------------------TACCA
TGTGTCTTCGCCTCTCGTGAATTGTGATTGCTCTA-----AGGCTAATCCTATCCTATGGTTTCTCTTCTGCTTGGTATG
GGGGCAGTTCTAACACAAACTGAACATACTTCTGATTTA-TTTCCTGTACCTCATTCAGTTCCACAACACAGGTTCCCAA
AATGACCCACGAGTTTGACA-----AGTAGATAGAACCTCACAAGAATCCCAATAACAA---------ATACACGAATAC
GCGCCCTTAATTTTTT-AATAGCCGATTAAACCGGAAGTCACACGCATCTGATGTAGTATGATGTTGG-----CTGTAGA
CCATTGCCCGGCTCAGCTGTCGCTTCTGTTGGGCTTGTCTGACTCCTCCTGATACACCTGAAACAAGCACAAAGCGTGTC
AATCGTCGATGAGAACTGCAGAAAT--------AGAAGAGGGGGAGA-GGGGCAGTATCTGTCCTCCTACCGTGTCCGCT
GACGGGATCCACTCGTTTGTGGCGGGGTTTCCCTTGGAGGAAGCATGGCGCTCCGTCGCATCCGGGTCTTCGGAGAGCTC
GAACGAGGCGCCGGCCGGCCTGTCCACCTTGATGAAGCCCGTGCCAGTCTGCACCACGTCCATCGACCACGATTCAGTTC
AGCGGCTCATATAATTCAGAGAAAAAATCAGTA---CAATGCAGGGGAAGAAGGAAGTGACCGTGTGATGCTGCTTGCCG
ACGCAGCCGAGGTCCTTGTAGTACTCCGTCTCCACGAACTCCTCGCCCGCCTTCCCGCCCTCGCACAC
>SNPs
SSS------------------------------------------------S----------------------------
-------------------S----------------------------------------S-------------------
------------------------------SSSS-------S---------------S----------------------
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----------S-------------S-------------------------S-----S-------S---------------
--------------------------------------------------------------------------SSSS--
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------S-----
------S-S-S----SS-SS------SSSS-SSSS-----------------------------S---------------
---------SSS---------------------------------SS---------------------------------
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---------------------------------S----S----------------------SSSSSSSSSSS--------
-----------------------------S-----------------------------------------------S--
----------------------------------------SSSSSSS--SSSS-------S------------S------
---S------S-SSSSSSS----S------------S--------S----------------------------------
----------------------------------------------------------------S---------------
--------------------------S-----------------------------------------------------
S--------------------------------------------------------------------S----------
-----------------------------------------------------------------------------S--
-----------------------------------------S---S-----------SSSSS-------------S----
------S-----------S-----------------------------------------------S---SS--S-----
--------------------------------------------------------------S----------S-SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
--------------------------S--------SSSSS----------------------------------------
----------------S-----S----------------S-------S--------------------------------
-------------------------------------------------S---------SSSSSSSSS------------
----------------S-------------------S----------------SSS----------------SS------
----------------------------------------------------------------------S---------
-----S-------------------SSSSSSSS--------------S----------------------------S---
--------------------------------------------------------------------S-----------
-----------------------------------------------------------------------------S--
--------------------------S---------------------S-------------------------------
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>forward_1136
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----------------------------------------------------------------------------CAAC
ACACCGCAATACGCAA----------------------------------------------------------------
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>reverse_2266
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-------------------------GCCAGCAAAGAAGAGGGAGA-----------------------------------
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