>input_sequence_83045
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---------------------------------------------------------------ATGAGGGGAAGCGCGAG
GTCTCTAGTGGAAACTGCAACTAGACAAATCAAACCCGGAAATGGACTTGCAAGTACGTCAAGATCCACCCTCAATTTGC
TTTGCTTGAGAGTTTCAAGAACCAGCTTGGCGCCTTACTTCTTCACCTTCTGTTGAACAGGGTTGATGACGATTACTACT
CCCCGGAAGAACAAGAAGGAGATCAACGCTACTGAATCTGTCCTCCCAAAGGATGAAAACGTCGAGCCCCTCGTCGCTTT
CAGCCGGCCGCCTCCTTTGCCACCGGTTCTAGGCCCCTTGATCGCGCTCTCGCTTTTTCAGACTTCTTCTAGTGATGAAG
ACAGCAAATGA---------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G414400
AGTACATGGTAGACAGTTTTTTATAAACATATAACATTTTTTAAAATGCTTGATTAGCAT--TTTAAATACAAGTTTACA
TTTATTATTAGATGGGCAACAGATCTATAC----GCATTTAACACTTGTCAGAAAACAACTTTAACATTTTGTGAATGCA
TGGTCAACATTTTTCTATATAGATTAAGCAGTTTTTATATGCTTGGTTAATATTTTTAAAATACTTATTTAACATTTTTT
TCGAATGCTTGGATTAATTTGTAATAAACACAGATCGGTGCAACT-----ATGATAAGGGCTAGTCTCTCACGGGCCGGT
AAGACTAATTTCAGTTAGATATACGGCCGTCCACACA---------GATCAGGCTCTTCCATTGAGATAAGCCCGGCCCA
TATGGTCTGCCAGCGAAAAGATGACT--GGTCTCCCCCGAGAAATTTCCAGATGTTTCGCCTATCCTCCATAACCCAGAT
CAAGGGCACGCCATCATCATTTCATACGACTCTCCTGCGCAACGAGATCGAGGTATGGCTTCCCGATCCCTCACGATTCA
CATCCGTGCTTTCGTAGTCGTAGGTCCGGTATTGCTGCATCCCACTTGCATCTCTTGCGCGGGGGATTATAATTTGTTAG
TACCTCAGATTTCTCTTGTTTTTGTTCTCGGTTGATTGTTCATTTGAGACGCAACGGATATGCGTTTGTGCGCATGGAAA
TGAGACTCCGGAAAATTCATGAAGGGACGGTATAATCGAAT-TTTTAGGATGGGGTGTGCTAGTTCATGGTTTTGTTGAT
GCCTCCAAGATTTTGTTGTTCGTCGCAAACTTGGCCCGTTTCTTGTTGCTCTCTGAATTCCTGTGCAAGGTTAATTGTTC
TTTCTGCATGACCCTTTCTGTATAATTGACCGTATATGTATTTGTGGTACGTTTGGAGATACCAAACATATCACTTGTTG
CATGCTTATTCCCATGAATCTGTTCGTTGAGTAGAGATTGCAGGCAGCAAGCGCACGAATTCCATGAGGGGAAGCGCGAG
GTCTCTAGTGGAAACTGCAACTAGACAAATCAAACCCGGAAATGGACTTGCAAGTACGTCAAGATCCACCCTCAATTTGC
TTTGCTTGAGAGTTTCAAGAACCAGCTTGGCGCCTTACTTCTTCACCTTCTGTTGAACAGGGTTGATGACGATTACTACT
CCCCGGAAGAACAAGAAGGAGATCAACGCTACTGAATCTGTCCTCCCAAAGGATGAAAACGTCGAGCCCCTCGTCGCTTT
CAGCCGGCCGCCTCCTTTGCCACCGGTTCTAGGCCCCTTGATCGCGCTCTCGCTTTTTCAGACTTCTTCTAGTGATGAAG
ACAGCAAATGAGTCGCCAGGTATGTACAGATGTTGCCCATGCTCTTCTCTGTTTTTCCGCATCTCCGCAATGATGCC---
GTGAAATCAAATTCAGAATTCTGTGCAGGGGGCTTCCTTGTTTGATCGCTGAGTTGGTTACTTTTCGGAGCCTGGCCGTG
TATATAGTCGGAGGTTGTAGACATCATGTTGCTGTAGTTATCTGGCAAGTACTACGAAATCTGAATAATGTAGTAGTCTT
TTGTGTGACAACTTTTCAGACTGAACAAATTTCGAAGTCTGTCACTGTGCAATGTTTTATTTCCTCGTGAATCCATATGG
GCTCCTTTACAAGTTGCAGCAAACGTGCCAGAATAGCTACAACAACGCAGTCGGTAAGAACCTCTAGCCGATACCTAGAA
AGCTAG---TACAACCGAGTAAAATTGCTAGTTTACCCCACTAAACCGGATCTAAATGAAGTACCAAATCTGATAAGGGA
GTAAAAAAATTAGTCCTCCGCCGAAATCCCCCCGGTGGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCTCTTCTCCCGCCCGCGCGGCTCCACCTTTCCTGTCGC
CGGCTCCCCACCCGCCTCAATCACCACCGATGAACGCCACCATCGCTGGAATGGGTGGCCAAGACCCTTCACCACCGCCG
GCGTGCCGTCATCGGAAACCACACCCGTGCTGCCGCCCGCGCCGAAAAATGGTTGAGGATTAAAAATGTTCTTTGACCCA
CCACACTGGCGGTGGCTGCCGTTACCAAGGCCGGTGGGGTGGCAATTGCCTCTCTGA
>chr2A_3
--TACATGGTAGAATTTTTTCTATAAACATTTAACATTTTTGTAAATGCTTGATCAGCATTTTTTAAATACAAGTTTACA
TTT-TTATTAGATGGTCAACAGTTTTATCTATAGGCATTTAACACTTGTCAAAAAATAACTTTAGCATTTTGTGAATACA
TGGTCAACATTTTTCTATATACATTAAGCAGATTTTAAATGCTTCGTTAATATTTTTCAAATACTTGTTTAACA-TTTTT
TCGAATGCTTGGATTAATTT---ATAAACACAGATCAGTGCAACTGGCCTATGATAAGTGCTAGAGTTTGACGGGCCGGT
AAGACTTATTTCAGTATGATATGGGCCAGACTTATTTTAAACGAGGGATCGGGCTCTTCCATTCAGATAAGTCTGGCCCA
TATGGTCTGCCAGCGAAAAGATGACTCTGGTCTCCCCCGAGAAATTTCCAGATGTTTCGCCTATCCTCCATAACCCAGAT
CAAGGGCACGCCATCATCATTTCATACGACTCTCCTGCGCAACGAGATCGAGGTATGGCTTCCCGATCCCTCACGATTCA
CATCCGTGCTCTCCTAGTTGTAGGTCCGGT--------ATCTAACCTGCAACTCTCGCGCGGGGGAT--TAATTTGTTAG
TACCTCAGATTTCTCTTGTTTTTGTTCTTGATTGATTGTTCATTTGAGACGCAACTGATATGCATATATGCGCATGGAAA
TGAGACTGAGGAAAATATATGAAGGGACGGTGTGATAAGGAATTTTAGGAAGGGGTGTGCTAGTTCATGGTTTTGTTGAT
GCCTCCAAGATTTTGTTGTTCGTCGCCAGCTTGGCCCGTTTCTTGTTGCTATCTGAATTTCTGTGCAAGGTTAATTGTTC
TTTCTGCATGACCCTTTCTGTATAATTGACCGTATA-------------------------CCAAACATATCACTTGTTG
CATGCTTACTCCCATGAATCTGTTCTTTGAGTAGAGATTGCAGGCAGCGAGCGCACGAATTCCATGAGGGGGAGTGCGAG
GTCTCTAGTGGAAACTGCAACCAGACAAATCAAACCTGGCAATGGACTTGCGAGTAAGTCAAGATCCACCCTCAATTTGC
TTTGCTTGAGAGTTTGAAGAACCAGCTCGGTGCCTTACTTCTTCACCTTCTGTTGAACAGGGTTGATGACGATTACTACT
CCCAAGAAGCATGAGAAGGAGATCAGCCCTACTGAATCTGCCCTCCCAAAGGATGAAAATGTCGAGCCCCTCGTCGCATT
CAGCCGTCCGCCTCCTTTGCCACCGGTTCTAGGCCCCTTGATCGCGCTCTCGCTTTTTCAGACTTCTTCTAGTGATGAAG
ACAGCAAATGAGTCGCCAGGTATGTGCAGATGTTGCCCATGCTCTTCTCAGTTTTTCCGCAGCGT--------------A
GTGACATAAAATTCAAAATTCTTTGCAGGGGGCTTGCTTGTTTGATCGCTGAGTTGGTTACTTTTCGGAGCCTGGTCGTG
TATATAGTCAGAGGTTGTAGACATCATGTTGCTGTAGTAGTCTGGCAAGTACTACGAAATCTGAATAATGTAGTAGTCTT
TTGTGTGACAATTTTTCAGACTGAACAAATTTCGAAGTCTGTCGCTGTGCAATGTTTTATTTCCTTGTGAATCCATATGG
GCTCGTTCACGAGTTGCAGCAAACGTGCCAGAATAGCTACAACAACGCAGACGGTAAGAACCTCTAGCCGACCCCTAGAA
AGCTATACTTACAACGGAGTAAAATTTCTAGTTTACCCCACTAAACCGGATCTAATTGAAGTACCAAATCTGATAAGGGA
GTAAAAAAAATTTGTTCCCGC-----------------------------------------------------------
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>chr2D_927
ATCTAC--------------------------------------------------------------------------
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--------------------------------------------------------------------------TTCTTG
CATGCTTATTCCCGTGAATCTGTCCTTTGAGTAAACCGTGCAGGCAGCTAGCACACCGATTCCATGAGGGGAAGCGCGAG
GTCTCTAGTTGAAACCGCAACCAGACAAATCAAACCTGGCAATGGACTCGCAAGTATGTCAGCATCCACCTTCAGTTTGC
TTTGCTTGAGAATTTCAAGAATCAGCTGTCGGTGTCTCGG-TTTACCTTGTGTTGAACAGGGGTGATGACGATTACCACT
CCCAAGAAGCACGAGAAGGAGATCAGCCCTACTGAATCTGCCCTCCCAAAGGATGAAAACGTCGAGCCCCTCGTCGCTTT
CAGCCGGCCGCCTCCTTTGCCACCGGTTCTAGGCCCCTTGATCGCGCTCTCGCTTTTTCAGACTTCTTCTAGTGATGAGG
ACAGCAAATGAGTCGCCAGGTATGTGCAGATGTTGCCCATGCTCTTCTCTGTTTTTCCGCA--------ATGATGCCACA
GTGACATAAAATACAGAATTCTGTGCAGGGGGCTTGCTTGTTTGATCGCTGAGTTGGTTACTTTTGGGAGCCTGGCCGTG
TATATAGTCAGAGGTTGTAGACATCATGTTGCTGTAGTAGTCTGGCAAGTACTACGAAATCTGAATAATGTAGTAGTC--
TTGTGTGACAACTTTTCAGACTGAACGAATTTCAAAGTCTGTCGCTGTGCAACGTTTTATTTTCTTGTGAATCCATATGG
GCTCGTTTACAAGTTGGAGCAAACGTGTCAGAATAGCTCCAACAACGCAGACGGTAAG----------------------
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>SNPs
-S-----------SSS----S---------S----------SS-----------S-------------------------
---S-----------S------S-S---SS---------------------S----S-------S------------S--
---------------------S---------S-----S------S------------S--------S-------S-----
--------------------SSS-------------S---------------------S-----SS-S-S----------
------S--------SS-----SS-S-S-S-SSSSSS-------------S------------S-------S-S------
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----------S--S----S-----------SSSSSSSS---SS--S----S----S-----------SS-----------
----------------------------S-S------------------------S-------S-S-S------------
-------SS-------SS-------------S-S--SSSSS---------S-----------------------------
--------------------------S-S---------------------S--------S--------------------
------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS-------------------
-------------------------S----------------------S-------------------------------
---------------------S--------------S--S----------------S-----------------------
---------------------------S--S-------------------------------------------------
---SS----S--S------------S-S------------S---------------------------------------
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-------------------------S-----------------------------------S-SSSSSS-----------
----S--S---------------------------S--------------------------------------------
---------S----------------------------SS----------------------------------------
-------------------------------------------S---------------------S--------------
----S---------------------------------------------S--------------------SS-------
-----S---------S----------S----------------------------S------------------------
---------S-SSSSSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_357
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-----------------GATATACGGCCGTCCACACA-------------------------------------------
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>reverse_2178
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-----------------CAATCACCACCGATGAACGC-------------------------------------------
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