>input_sequence_83043
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----------------------------------------------------------ATGAGCCGCAGCAACAGGAAGA
GCTCATCAAAGGGCCTTGACCTGAAGCTGAACCTCTCGCTGCCCGCAAGAGGGGACTCCTCCAACAGGGTGATGGCTGAC
GAGGAGTCGTCCCCGAGCTCGTGCCTGTCGTCGGAGAACGAGCATGGCCTGCAGTGGTCCAACAGCCCCGAAGCGACGTC
CATGGTGCTCGCCGCCTGCCCTCGCTGCTTCATCTACGTCATGCTCCCCCAGGACGACCCTCGGTGCCCCCAGTGCAAGA
GCCCCGTGCTCCTTGACTTCCTGCAGGACAGTGGCAACAATAACAACAACACCAACAGCAACAGCAGGAAGAGCAGGAGG
GGGTGA--------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G296600
TGCAT-TTGAGACAC--TGCCAAATAAATTCCATTCAAGATCACATTCAAGTGGTGAAATCAATTTGGGCCAGT-AAAAA
ACAATTAAGCTTTCGAAGCAATTAGAAGGACAGGTATTGATGAGCTTCAACTTTCAACTACACACCC---A---ATAATA
ACTCTCATAATTACAAGATGTGTCTATCTTCCATGTC-------------------------------------------
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--------------------------------------CAGTGTCTAGATGCAGTAAAACCTGTTGGAGGCAA-CTCATT
TGCAAACTTTTAGAACTGAATCACTATATGTGTTTTAACTTTCGACCAAACATA-----CTACTCACTCTAATATGTGAA
-GTCTACTATGAAAAGATTAAGAAAAAAGTGTGTGGATTAGAGCCCTTAATATCAGTGACAAGCTTTCATTAGGGTAAAC
AGGAAAGAAAAGCAAAGCAAAGCAAAACATGTCAAAAGTCTAGCTGTAACTACATACCCTGCCTCCGTTTTCGCCTGTTA
GATAGCCTACCTTGTGTGCATGACCAGCCCTCTCACCTCGCACTTCTCTTCCACCCAACATAACACAAAATATTCAACCC
ATCCTTTGCCACTCTCCAACCATGATTTGGTGGGTAATAAAATGCCTCGGCGTTGTACAACATGGAGAGAGGGAGAGCGA
GAGAGAGAAGTAGTAGTACTATGCCTCTCACTGTTGCATTAAACAAAACTAATTGACCTCTCCCCATCCATCTCCCTCCC
CACTATAAATACTCGCCATCTCCATTCCAACTACACCAACGCAACACGCTCCTAGCATTCCAACTCCCGGGCTTCTCTCC
TTCCAGAGCATCCCCTCCCCTGTCGCTCTCACTTTCATCTGCACGCCTCCTGCTTCTCGGACCCGACGCAAAAGTAAGCT
CCCTCCCTATATGCATCCATCTCTAGTGATCTCTAATCTCTTCTAGGTTGCAACAATCGATCAATAGTAGCTTTCAGAGC
GTATGCTAATCCATAAGTTCAACGTTTTGATGTATGCAGACAGGGGATACCTCTGAGGATGAGCCGCAGCAACAGGAAGA
GCTCATCAAAGGGCCTTGACCTGAAGCTGAACCTCTCGCTGCCCGCAAGAGGGGACTCCTCCAACAGGGTGATGGCTGAC
GAGGAGTCGTCCCCGAGCTCGTGCCTGTCGTCGGAGAACGAGCATGGCCTGCAGTGGTCCAACAGCCCCGAAGCGACGTC
CATGGTGCTCGCCGCCTGCCCTCGCTGCTTCATCTACGTCATGCTCCCCCAGGACGACCCTCGGTGCCCCCAGTGCAAGA
GCCCCGTGCTCCTTGACTTCCTGCAGGACAGTGGCAACAATAACAACAACACCAACAGCAACAGCAGGAAGAGCAGGAGG
GGGTGAAAGAAGAGGAGGAGAGGCTCCATTCGGCTGCACCGACATCAAGAAAAGCGTTTATATGAAGTCCTAGGTCCAGT
AGTTCTCTTTCGTTTGATCATTTCTTCAGTGTAACCATGATATGTCAGTATTAAAATTGTGAGACTGGCATAT-ATCCAT
GTGCTGGT--GTCACGATTTTGACACATCATGGATACACTGGGGACTATATCCCCTCTCATGTGTTCTTCTTCGGTGGTT
CTAAATGGAGTAGTTTGTTAGGCATAGGACCAGACTTCTTCTCTTCTGTTTCTTACTTTCAAGACAAGAAAAGATTACCC
CTGAAAATCTCAAGTTGGGCCGGATGAGTATTATTCTGAAACATCTATGATAGACAGGCATCTGCGACTTCACACCATGA
ACACCCATCTGTTCATTCCTTTGTGTTCAGACAAGGTATGCAAATCCACCATACAAAGTGGAGAAAGTGC---AAGAACA
GTCAACCCCAGAAGTGGAGTGTTAGGAATTTGTCACCACAGATTAGTTGAACTAACCAATTGGCACTACAACTCCCACGC
CTCAACATAATGAGGACTCTACCTACTATCCTTGAAAAAGACATCATGTAATTAAAAAGGTGATGAAATTTCAAATTGGA
GAGATATAGTATTTGAAACAATCAAACAGTCTACGGTGTGACGCCATGCAATGAATACCGATTGATTTCAGCATCCATCA
-CTCTATCTCTTGCCATTATACTTCCATCTGAATACGTGCATTGTGACGCAGCACGCCAGCAACCTAATTTAATGCCCGC
TTTGGTCAACTTTGCAAGCCGATTGATTTATGTTTACTCAATAAAGACATCTCAGTTTGAGTCCACATCATCATAATCAG
ATACGGAGACCAGCCATGCTACTTGTTGGCTTGAATCACATCAGAAAAGGAAA--AAAAACAGACAGGAAATTAAAAAGC
ATGTGCTTTGTTAAGTGTACCTTAATTGTCCTGATTGGAACGGTAAGCATGTCAC
>chr2D_1
TGCAT-TTGAGACACTGTTCCAAATAAATTCCATTCAAGATCACATTCAAGTGGTGAAATCAATTTGGGCCAGT-AAAAA
ACAATTAAGCTTTCGAAGCAATTAGAAGGACAGGTATTGATGAGCTTCAACTTTCAACAACACACCC---A---ATAATA
ACTCTCATAATTACAAGATGTGTCTATCTTCTATGTC-------------------------------------------
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--------------------------------------CACTGTCTAGATGCAGTAAAACCGGTTGGAGGCAA-CTCATT
TGCAAACTTTTAGAACTGAATCACTATATGTGTTTTAACTTTCGACCAAACATACTACTCTACTCACTCTAATATGTGAA
-GTCTACTATGAAAAGATTAAGAAAAAAGTGTGTGGATTAGAGCCCTTAATATCAGTGGCAAGCTTTCATTAGGGTAAAG
AGGAAAGAAAAGCAA----------AACATGTCAAAAGTCTAGCTGTAACTACATACCCAGCCTCCGCTTTCGCCTGTTA
GATAGCCTACCTTGTGTGCATGACCAGCCCTCTCACCTCGCACTTCTCTTCCACCCAACATAACACAAAATATTCAACCC
ATCCCTTGCCACTCTCCAACCATGATTTGGTGGGTAATAAAATGCCTCGGCGTTGTACAACAT-GAGAGAGGGAGAGCGA
GAGAGAGA-------GTAGTATGCCTCTCACGGTTGCATTAAACAAAACTAATTGACCTCTCCCCATCCATCTCCCTCCC
CACTATAAATACTCGCCATCTCCATTCCAACTACACCAACGCAACACGCTCCTAGCATTCCAACTCCCGGGCTTCTCTCC
TTCCAGAGCATCCCCTCCCCTGTCGCTCTCACTTTCATCTGCACGCCTCCTGCTTCTCGGACCCGACGCAAAAGTAAGCC
CCCTCCCTATATGCATCCATCTCTAGTGATCTCATATCTCTTCTAGGTTGCAACAATCGATCAACAGTAGCTTTCAGAGC
GTATGCTAATCCGACAGTTCAACGTTTTGATGTGTGCAGGCAGGGGATACCTCTGAGGATGAGCCGCAGCAACAGGAAGA
GCTCATCAAAGGGCCTTGACCTGAAGCTGAACCTCTCGCTGCCTGCAAGAGGGGACTCCTCCAACAGGGCGATGGCTGAC
GAGGAGTCGTCCCCGAGCTCATGCCTGTCGTCGGAGAACGAGCATGGCCTGCAGTGGTCCAACAGCCCTGAGGCGACGTC
CATGGTGCTCGCCGCCTGCCCTCGCTGCTTCATCTACGTCATGCTCCCCCAGGATGACCCTCGGTGCCCCCAGTGCAAGA
GCCCCGTGCTCCTTGACTTCCTGCAGGACAATAGCAACAATAACAACAACAACAACAGCAACAGCAGGAAGAGCAGGAGG
GGGTGAAAGAAGAGGAGGAGAGGCTCCATTCCGCAGCACCGACATCAAGAAAAGCGTTTATATGAAGTCCTAGGTCCAGT
AGTTCTCTTTCGTTTGATCATTTCTTCAGTGTAACCATGATATGTCTGTATTAAAATTGTGAGGCTGGCATAT-ATCCAT
GTGCTGGTGTGTCACGATTTTGACACATCATGGATACACTGGGGACTATATCCCCTCTCCTGTGTTCTTCTTCGGTGGTT
CTAAATGGAGTAGTTTGTTAGGCATAGGACCAGACTTCTTCTCTTCTGTTTCTTACTTTCAAGACACGAAAAGATTACCC
CTGAAAATCTCAAGTTGGGCCGGATGAGTATTATTCTGAAACATCTATGATAGACAAGCTTCTGCGACTTCACACCACGA
ACACTCATCTGTTCATTCCTTTGTGTTCAGACAAGGTATGCAAATCCACCATACAAAGTGGAGAAAGTGC---AAGAACA
GTCAACCCCAGAAGTGGAGTGTTAGGAATTTGTCACCACAGATTAGTTGAACTAACCAATTGGCATTACAACTCCCACGC
CTCAACATAATGAGGGCTCTACCTACTATCCTTGAAAAAGACATCAGGTAATTAAAAAGGTGATGAAATTTCAAATTGGA
GAGATATAGTATTTGAAACAATCAAACAGTCTACGGTGTGACGCCATGCAATGAATACCGATTGATTTCAGCATCCATCA
-C-CTATCTCTTGCCATTATACTTCCATCTGAATACGTGCATTGTGACGCAGCACGCCAGCAACCTAATTTAATGCCCGC
TTTGGTCAACTTTGCAAGCCGATTGATTTATGTTTACTCAATAAAGACATCTCAGTTTGAGTCCACATCATCATAATCAG
ATACGGAGACCAGCCATGCTACTTGTTGGCTTGAATCACATCAGAAAAGGAAAAGAAAAACAGACAGGAAACTAAAAGGC
ATGTGCTTTGTTAAGTGTACCTTAATTGTCTTGATTGGAATGGTATGCACGTCAC
>chr2B_1
TGCATTTTGAGACGCTGTGCCAAATAAATTCCATTCAAGATCACATTCAAGTGGTGAAATCAATTTGGGCCAGTCAAAAA
AAAATTAAGCTTTTGAAGCAATTA---GGACAGGTATTGATGAGTTTCAACTTTCAACTACACACCCAATA---ATAATA
ACCGTCATAATTACAAGATGTGTCTATCTTCCATGTC-------------------------------------------
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--------------------------------------CACTGTCTAGAAGCAGTGAAACCTGTTGGAGGCAA-GTCATT
TGCAAACTTTTAGAACTGAATCACTACATGTGTTTTAACTTTAAAC------------------CACTCTAATATGTGAA
-CTCTACTATGAAAAGATTGACAAAAAAGTGTGTGGATTAGAGCCCTTAATATCAGTGGCAAGCTTTCATTAGGGTAAAG
AGGAAATAAAAGCAAAGCA-----AAACATGTCAAAAGTCTAGCTGTAACTACATACCCAGCCTCTGCTTTCGCCTGTTA
GATAGCCTACCTTGTGTGCATGACCAGCCCTCTCACCTCGCACTTCTCTTCCACCCAACATAACACAAAATATTCAACCC
ATACCTTGCCACTCTCCAACCATGATTTGGTGGGTAATAAAATGCCTCGGCGTTGTACAACAT-GAGAGGGAGAGCGAGA
GAGAGA-----AGTAGTAGTATGCCTCTCACTGTTGCATTAAACAAAACTAATTGACCTCTCCCCATCCATCTCCCTCCC
CACTATAAATACTCGCCATCTCCATTCCAACTACACCAACGCAACACGCTCCTAGCATTCCAACTCCCGGGCTTCTCTCC
TTCCAGAGCATCCCCTCCCCTGTCGCTCTCACTTTCATCTGCACGCCTCCTGCTTCTCGGACCCGACGCAAAAGTAAGCT
CCCTCCCTATATGCATCCATCTCTAGTGATCTCTAATCTCTTCTAGGTTGCAACAATCGATCAATAGTAGCTTTCAGAGC
TGATGCTAATCCGACAGTTCAACGTTTTGATGTGTGCAGGCAGGGGATACCTCTGAGGATGAGCCGCAGCAACAGGAAGA
GCTCATCAAAGGGCCTTGACCTGAAGCTGAACCTCTCGCTGCCTGCAAGAGGGGACTCCTCCAACAGGGTGATGGCTGAC
GAGGAGTCGTCCCCGAGCTCATGCCTGTCGTCGGAGAACGAGCACGGCCTGCAGTGGTCCAACAGCCCCGAGGCGACGTC
CATGGTGCTCGCCGCCTGCCCTCGCTGCTTCATCTACGTCATGCTCCCCCAAGACGACCCTCGGTGCCCCCAGTGCAAGA
GCCCCGTGCTCCTTGACTTCCTGCAGGACAATAGCAACAATAACAACAGCACCAACAGCAACAGCAGGAAGAGCAGGAGG
GGGTGAAAGAAGAGGAGGAGAGGCTCCATTCGGCAGCACCGACATCAAGAAAAGCGTTTATATGAAGTCCTAGGTTCAGT
AGTTCTCTTTCGTTTGATCATTTCTTCAGTGTAACCATGATATGTCAGTATTAAAATTGTGAGACTGGCATATTATCCAT
GTGCTGGT--GTCACGATTTTGACACATCATGGATACACTGGGGACTATATCCCCTCTCCTGTGTTCTTCTTCGGTGGTT
CTAACTGGAGTAGTTTGTTAGGCATAGGACTAGACTTCTTCTCTTCTGTTTCTTACTTTCAAGACAAGAAAAGATTACCC
CTGAAAATCTCAAGTTGGGCCGGATGAGTATTATTCTGAAACATCTAGACAAGAAAA--------GACTTCACACCATGA
ACACTCATCTGTTCATTCCTTTGTTTTCAGACAAGGTATGCAAATCCAGCATACAAAGTGGAGAAAGTGCAAGAAGAACA
GTCAACCCCAGAAATGGAGTGTTAGGAATTTGTCACCACAGATTAGTTGAACTAACCAATTGGCACTACAACTCCCACGC
CTCAAAATAATGAGGACTCTACCTACTATCCTTGAAAAAGACATCATGTAATTAAAAAGGTGATCAAATTTCAAATTGTA
GAGATATAGTATTTGAAACAATCAAACAGTCTACGGTGTGACGCCATGCAATGAATATCGATTGATTTCAGCATCCATCA
-T-CTATCTCTTGCCATTATACTTCCATCTGAATATGTACATTGTGAAGTAGCACGCCAGCAACCTAATTTAATGCCCGC
TTTGGTCAACTTTGCAAGCCGGTTGATTTATGTTTACTCAATAAAGACATCTC-GTTTGAGTCCACATCATCATAATCAG
ATACGGAGACCAGCCATGCTACTTGTTGGCTTGAATCACATTAGAAAAGGAAAAGAAAAACAGACAGGAAACTAAAAGGC
ATGTGCTTTGTTAAGTGTACCTTAATTGTCTCGATTGGAATGGTAAGCACGTCAC
>chr4B_1
TGCAT-TTGAGACGCTGTGCCAAATAAATTCCATTCAAGATCACATTCAAGTGGTGAAATCAATTTGGGCCAGTCAAAAA
AAAATTAAGCTTTCGAAGCAATTA---GGACAGGTATTGATGAGCTTCAACTTTCAACTACACACCC---AATAATAATA
ACTGTCATAATTATAAGATGTGTCTATCTTCTGATATAGACTCGACTAGATGGCGAGTCGTTCGTCGGTCCGAACTTTCA
CGGTACTAGCAGCAATAAGAAATTCCGATCGAGCAAAGATACAAGACCGTAATATCAAAAACTGGCGTCGAGTAGATGAA
TCAACTCCACGCGTAGCAGCGACAAAATCCGTCACGAATCAGCAAAAGCAAACACGATATTTGGTGTCCCCCGACATGGG
ACTTTTCTGACTTTTATTCAACTCACGATCTAAACAAAACTTGACCTTTACATCGGCCGTAGCCAGCCTTTTATATAGGC
ATCACACACCCGATCAAACCGTCCCACGAGCAAAGCAAAATTGACACGGACTCTCTCTCCTAACCATAAACCGAACAGGA
CTCCTAGTACTACTAGGACTCCTCTAAATCTCACGCCTAAGAAAAAGTTCCTTTACCTAACAACCAAGAATTTACTAATT
AACTATCCGGCCACGCTGATCACTAGGATCCAAAATATACCTTCACCGTACTATATCATCTTGGATTTAGAACGTTTCTG
TACGTAAACCTCATGTGACCTAGACCGAAATAGCATCGACAATTATCCAGCTTGGCGTACGAAAATTAGGCTTGACTTCT
TCAGGCTCTGGTTCTGGTGACGGTATTTTAAGTGCCATTGTACCCATCATCAAAATATTAGAATTTGTAATATGATCAGT
TTTTGGTACGGCACTGACGGGCACATCATCTTCCATTACACTGTCTAGAAGCAGTGAAACCTGTTGGAGGCAAAGTCATT
TGCAAACTTTTAGAACTGAATCACTACATGTGTTTTAACTTTAAAC------------------CACTCTAATATGTGAA
ACTCTACTATGAAAAGATTAACAAAAAAGTGTGTGGATTAGAGCCCTTAATATCAGTAGCAAGCTTTCATTAGGGTAAAG
AGGAAAGAAAAGCAAAGCA-----AAACATGTCAAAAGTCTAGCTGTAACTACATACCCAGCCTCCGCTTTCGCCTGTTA
GATAGCCTACCTTGTGTGCATGACCAGCCCTCTCACCTCGCACTTCTCTTCCACCCAGCATAACACAAAATATTCAACCC
ATACCTTGCCACTCTCCAACCATGATTTGGTGGGTAATAAAATGCCTCGGCGTTGTACAACAT-GAGAGAGGGAGAGCGA
GAGAGA-----AGTAGTAGTATGCCTCTCACTGTTGCATTAAACAAAACTAATTGACCTCTCCCCATCCATCTCCCTCCC
CACTATAAATACTCGCCATCTCCATTCCAACTACACCAACGCAACACGCTCCTAGCATTCCAACTCCCGGGCTTCTCTCC
TTCCAGAGCATCCCCTCCCCTGTCGCTCTCACTTTCATCTGCACGCCTCCTGCTTCTCGGACCCGACGCAAAAGTAAGCT
CCCTCCCTATATGCATCCATCTCTAGTGATCTCTAATCTCTTCTAGGTTGCAAGAATCGATCAATAGTAGCTTTCAGAGC
GTATGCTAATCCGACAGTTCAACGTTTTGATGTGTGCAGGCAGGGGATACCTCTGAGGATGAGCCGCAGCAACAGGAAGA
GCTCATCAAAGGGCCTTGACCTGAAGCTGAACCTCTCACTGCCTGCAAGAGGGTACTCCTCCAACAGGGTGATGGCTGAC
GAGGAGTCGTCCCCGAGCTCGTGCCTGTCGTCCGAGAACGAGCACGGCCTGCAGTGGTCCAACAGCCCCGAGGCGACGTC
CATGGTGCTCGCCGCCTGCCCTCGCTGCTTCATCTACGTCATGCTCCCCCAGGACGACCCTAGGTGCCCCCAGTGCAAGA
GCCCCGTGCTCCTTGACTTCCTGCAGGACAATAGCAACAATAACAACAGCACCAACAGCAACAGCAGGAAGAGCAGGAGG
GGGTGAAAGAAGAGGAGGAGAGGCTCCATTCGGCAGCACCGACATCAAGAAAAGCGTTTATATGAAGTCCTAGGTCCAGT
AGTTCTCTTTCGTTTGATCATTTCTTCAGTGTAACCATGATATGTCAGTATTAAAATTGTGAGACTGGCATATTGTCCAT
GTGCTGGT--GTCACGATTTTGACACATCATGGATACACTGGGGACTATATCCCCTCTCATGTGTTCTTCTTCGGTGGTT
CTAAATGGAGTAGTTTGTTAGGCATAGGACCAGACTTCCTCTCTTCTGTTTCTTACTTTCAAGACAAGAAAAGATTACCC
CTGAAAATCTCAAGTTGGGCCGGATGAGTATTATTCTGAAATATCTATGATAGACAAGCTTCTGCGACTTCACACCATGA
ACACTCATCTGTTCATTCCTTTGTTTTCAGACAAGGTATGCAAATCCAGCATACAAAGTGGAGAAAGTGCAAAAAGAACA
GTCAACCCCAGAAATGGAGTGTTAGGAATTTGTCACCACAGATTAGTTGAACTAACCAATTGGCACTACAACTCCCACGC
CTCAAAATAATGAGGACTCTACCGACCATCCTTGAAAAAGACATCATGTAATTAAAAAGGTGATCAAATTTCAAATTGTA
GAGATATAGCATTTGAAACAATCAAACAGTCTACGGTGTGACGCCATGCAATGAATACCGATTGATTTCAGCATCCATCA
CT-CTATCTCTTGCCATTATACTTCCATCTGAATACGTGCATTGTGACGCAGCACGCCAGCAACCTAATTTAATGCCCGC
TTTGGTCAACTTTGCAAGCCGGTTGATTTATGTTTACTCAATAAAGACATCTC-GTTTGAGTCCACATCATCATAATCAG
ATACGGAGACCAGCCATGCTACTTGTTGGCTTGAATCACATCAGAAAAGGAAAAGAAAAACAGACAGGAAACTAAAAGGC
ATGTGCTTTGTTAAGTGTACCTTAATTGTCTTGATTGGAATGGTAAGCACGTCAC
>SNPs
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----------------------------------------S---------------------------------------
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----------------------------------------------------------S--------------------S
-------------------SSSSS-----------------------------------S-------S------------
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----S----------------------------------------------------------S----------------
--------SSS-------S-------------------------------------------------------------
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------------SSS------------------S-----S----------------------------------------
-------------------------------------------S------------------------------------
-----------------------------------------------------------------------S--------
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------------------------------S-S-----------------------------------------------
----------------------------------S---------------------------------------------
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--------------------------------------------------------S--S--------------------
----S---------------------------------------------------------------------------
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--S-----------------------------------------------------------------------------
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-----------------------------------------------------------------------S-----S--
------------------------------S---------S--------S-----
>forward_1188
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------------------------------------------------ACTACATACCCTGCCTCCGT------------
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>reverse_2115
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----------------------------------TGCACCGACATCAAGAAAAGC-------------------------
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