>input_sequence_83041
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATGGCGAAGGCATGCTCACCGACCAGCCCACAAACCCTGG
TCGTCTGGGATATACGGAGGAGCCCGCACACAGGCCCTAGCACTTTTGGTGCAAAGGCACCCAAGGCGTCCACGTGCGCC
ACCCATGGTGTCTTCTTCGACCGGCGTCTTCATCCATCTACACCACCACAACGACGTCGAAGCTGCAGACCTGCAGCCCA
GCACCATCTACACCACCACCACGACATTGAAGCCGCCCGCTTACAGCCCGGCGCCATCTCCACCCTGCCAATATCAACAT
GCACCAAAGTTGAGTTCAATGACACATGGCGCCCAAGAGCTGAGCAGATGATGTTCATGTACACATGA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr2A_1_TraesCS2A01G085900
CTTTGGAGGGGGAGAAGAAGAGCGCAGCGCGAGTGTCGTGTGTGCCGTGTGCGGAAGCGGGCGCCGCAAATACACCGCGC
GAGGTACCGCTTCCTAGCGCGCGCCCAACTGCTTATACCGCGCGCGTGGTTATTGCGCGCCCGCTGGAGCCATCCGCCGG
GTTGCGCGCGCGCTAAAACAGGGGATTTTACGGCGCGGCGCCTGTTTAGCGCGCCTGTTGGAGATGCTCTAAACAATATA
GGAACCATGCACGTTGATGACTCCCTATCCTTCTTTTATCTTCTTCACCATGCAGATTGGAGATGCAAAGCACGTCAACC
GGATGGTGAAGCACGCGTCTAGGGAGGTAGCCAACAAACCAGAGACCCCAGAGAGGCAAGGACATGCCCACAGTAGCGCG
CACGGCGTGTGCGCCCGGGACGGCCAAGAGACCAGAAGCTGCACCCAGGAGATGGGTGCGCCCTTGGTGGCGGCCGACGG
CGCCCTCACACACGCGCCCATGTAGAGGAAGCAGCGGCAGCGATGAGCGGTTCACGGCGGCGGAAGCTTGCCGGCGGCCC
GAGACAACGCTGGCCGCGTCTGCAAGGCCGGGAAGTTGCGCCACCGCCACATGGCCGCTTCATGCAGACTTGTCCAAGCT
AGCTCCACGGGAATCATCAATCATCATCCGGACGCATCTCATGCATACTCATGGGCATGCACGGAGCTCTTATTCTTAAT
TCATGGTTTATCTGTATATAAATATATCTCGTTCTCTCCGTCCCTAATCCTTCAGGTGACACGGAGGAAAGCAGCGAGAG
GAGACCTCAAGGCCATCGGGAGATTGCACCCGGGAGAAACCGAGCCAAGAGGAGACGGGCCTGCGGTGGCAGCGTCGAGG
ACGAGATGACGCGTCGGCGGCAGCACGCACGCCGAGCACGGCGACCTCACACAAGCCAACACATGCCCAGTTGAAGATGC
TCCCACGGCGGCGGCGGAGAGGAGGTCGCGAGACGCGCCCATGGCGAAGGCATGCTCACCGACCAGCCCACAAACCCTGG
TCGTCTGGGATATACGGAGGAGCCCGCACACAGGCCCTAGCACTTTTGGTGCAAAGGCACCCAAGGCGTCCACGTGCGCC
ACCCATGGTGTCTTCTTCGACCGGCGTCTTCATCCATCTACACCACCACAACGACGTCGAAGCTGCAGACCTGCAGCCCA
GCACCATCTACACCACCACCACGACATTGAAGCCGCCCGCTTACAGCCCGGCGCCATCTCCACCCTGCCAATATCAACAT
GCACCAAAGTTGAGTTCAATGACACATGGCGCCCAAGAGCTGAGCAGATGATGTTCATGTACACATGAAGAAGCAGCTTC
AATGCGAATAAGGCGTTTCCTAACTGGTTGTGCGC-GC--AACGCCAATCACAACCG-CTGCTCCAACATATGGATCCGG
GCCATTTGCATGTGCATGCGGCATGCCCCTCTTCCTTTCTTTTCTTTCCTATAG--------ACTGACACATGCATGGCT
AT-----AGTACACCTGCATGCCTAGGTTGTCTTTCCTCTCTTCAAAAACTTTGTTACTTTTAGTTGTCTTTTAACAGTT
TAATCAAAATTT-GTTTTTCAAACTTTATATATATTTGAACTCCTGACATCAAGTTCTT---------------------
C---------------------AATTTTTGA--ACATATTTTTTTAACTGGAATTGAAATATGATTTTTTTAGAAGATTA
TCAGTGTTTTCAGTGAGGAACTTTGCTTGGCATAGTGAAGAACTTCTCATTTTCATTTGCAAAGTGATAAATAAACTGGA
CCAGGAGCTGAGAAACTTTACAAATAGGTTTTCTGCACTTTATTCGAAATATTAAAGAACTTCTCTAGAAAATGTATCTG
GAA-CCGAAGAACTTTATGAACAACTTGTCTAAACTTTGATGAAAT-GTTTATGAAACTTTTTT-AGAAATATATCAATA
TTAGACTTGTTTGGTAGAG---CTAGCCATGAGAAACTCAAATACATAAACGAATTTAAATTTGCATAGTTTATTTAGAA
GTTATGGTGATATATTAA-----CTTTGCTAGCAAATATGGTGAAGTAGCCCACCACCGATGCCTTGTGTACCTTGTGTC
AGATTTCTA-G------TATAGGACCTATTGATGTTGACATGCATGCATGGGACCAGCTGCATGTTGATTTAA-CGTCTA
GGATGGATGGGTGGACTCGCGGCGGCGATGTAGCACGCGCCACAACAAAGCTCAAGATGGCAGCGACGAGGCACACCTGT
GAAGACCGCAACAACACGACGAAAGTCCGCCGGTGAGCCAGGCGGAGCCTTCGTCCGTACACGCTGCCACGTACTACCTC
AACACAGGCATCCCAAGGTGGCTCCCTAT
>chr6B_1364
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CGGATAAGGCCTTTCCTAACTGGTTGCGCGC-GC--AACACCAATCATGGCCG-CTGCTCCAACATATGGATTCGG
GCCCTTTGCATGTGC-------ATGCCCCTCTCCCTCTCTTTTCTTTCCCACAG----------TGACACATGCATGGCT
AC-----AGTACACATGCATGCCTAGGTTATCTTTTCTCTCTCCAAAAACTTTAATACTTTTAGTTGTCTTTTAACGGTT
TAATCAAAATTTTGTTTATGAAACTTTATATATATTTGAACTCCTAGCGCCAAGATCTT---------------------
CAAAACAAGATTAGGCTTGGATAATTTTTAAACACATT-TTTGTTAATTGAAATTGAAATATGGTTTTTTT-GAAGATCA
TCAGTGTTTTCAGTGAGGAACTTTGCTGGGCATAGTGAAGAACTTTTCACTTTCATTTTCAAAGTGATAAATAAACATGA
TCAGGAGTTGAAGAACTTTATAAATAGTGTTTCTGCACTTTGTTAGAAATATTAAAGAACT---------AATGTATTTG
GAA-CCAAAGAACTTTACAAACAGCTTGCCTGAACTTTGATGAAAA-TTTTATGGAACTTCGTT-AGAAATAAATCAATA
TTGGACTTGTTTCGTAGAG---CTAGCCGTGAAAAACTCAAATACATAAATGAATTCAAATTTGCACAGTTTATTTAGAA
GTTATGGTGACATATTAA-----TTTTCGTAGAAAATATGGTGGAGTAGCCAACC---GAGACCTCCTGTACCTCTTGTC
AGATTTTTA-G------TGTAGGGCCTATTGATGTTGACATGTGCGCATGGCA-------CATGTTGATTTGA-CGTCTA
AGATGGATGCGTGGAC----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr1A_1365
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CGAATAGGGCGTTTCCTAATTGGTTGTGCGT-GC--AACGCCAATCACAACCG-CTGCTCCAACATATGGATCCGG
GCCCTTTGCATGTGC-------ATGCCCCTCTGCCTTTCTTTTCTTTCCTATAG--------ACTGACACATGCATGGCT
AT-----AGTACACCTGCATGCCTAGGTTGTTTTTCCTCTCTTCAAAAACTTTGTTACTTTTAGTTGTCTTTTAACAGTT
TAATCAAAATTT-GTTTTTCAAACTTTATATATATTTGAACTCCTGACACCAAGTTATT---------------------
C---------------------AATTTTTGA--ACATA-TTTTTTAACTGGAATTGAAATATGATTTTTTTAGAAGATTA
TCAGTGTTTTCAGTGAGGAACTTTGCTTGGCATAGTGAAGAACTTCTCATTTTCATTTGCAAAGTGATAAATAAACTGGA
CCAGGAGCTGAGGAACTTTATAAATAGGTTTTCTGCACTTTATTCGAAATATTAAAGAACTTCTCTAGAAAATGTATCTG
GAA-CCGAAGAACTTTATGAACAACTTGTCTGAACTTTGATGAAAT-GTTTATGAAACTTTTTT-AGAAATATATCAATA
TTGGACTTGTTTCGTAGAG---CTAGCCGTGAGAAACTCAAATACATAAACGAATTCAAATTTGCATAGTTTATTTAGAA
GTTATGGTGATATATTAA-----CTTTGCTAGCAAATATGGTGAAGTAGCCCATCACCGATGCCTTGTGTACCTTGTGTC
AGATTTCTA-G------TATAGGACCTATTGATGTTGACATGCATGCATGAGACCAGCTGCATGTTGATTTGA-CGTCTA
GGATGGATGGGTGGA-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr3A_1365
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CGAATAAGGCGTTTTCTAACTGGTTGTGCGC-GC--AACGCCAATCACAACCG-CTACTCCAACATATGGATCCTG
GCCCTTTGCATGTGC-------ATGCCCCTCTGCCTTTCTTTTCTTTCCTATAG--------GCTGACACATGCATGGCT
AT-----AGTACACCTGCATGCCTAGGTTGTTTTTCCTCTCTTCAAAAACTTTGTTACTTCTAGTTGTCTTTTAACAGTT
TAATCAAAATTT-GTTTTTCAAACTTTATATATATTTGAACTCCTGACACCAAGTTATT---------------------
C---------------------AATTTTTGA--ACATA-TTTTTTAACTGGAATTGAAATATGATTTTTTTAGAAGATTA
TCAGTGTTTTCAGTGAGGAACTTTGCTTGGCATAGTGAAGAACTTCTCATTTTCATTTGCAAAGTGATAAATAAACTGGA
CCAGGAGCTGAGGAACTTTATAAATAGGTTTTCTGCACTTTATTCGAAATATTAAAGAACTTCTCTAGAAAATGTATCTG
GAA-C-GAAGAACTTTATGAACAACTTGTCTGAACTTTGATGAAAT-GTTTATGAAACTTTTTT-AGAAATATATCAATA
TTGGACTTGTTTCGTAGAG---CTAGCCGTGAGAAACTCAAATACATAAACGAATTCAAATTTGCATAGTTTATTTAGAA
GTTATGGTGATATATTAA-----CTTTGCTAGCAAATATGGTGAAGTAGCCCATCACCGATGCCTTGTGTACCTTGTGTC
AGATTTCTA-G------TATAGGACTTATTGATGTTGACATGCATGCATGAGACCAGCTGCATGTTGATTTGA-CGTCTA
GGATGGATGGGTGGA-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr3A_1365
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CGAATAAGGCGTTCTCTAACTGGTTGTGCGC-GC--AACCCGAATCACAGCCG-CTGTTCAAATGCATGGATCGTG
GCCTTTTGCATGTGC-------ATGCCTCTCTGCCTCTCTTTTCTTTTCCATAG--------ACTGACACATGCATGGCT
AC-----AGTACACATGCATGGATAGGTTGTCTTTTCTCTCTTCAAAAACTTTGTTACTTTTAGTTGTCTTTTGACAGTT
TAATCAAAATTT-GTTTTTAAAACTTTATATATATTTGAACTCCCGACGCCAAGATCTT---------------------
CAGAACAAGATAAGGTTTGGATAATTTTGTT--ACACATTTTTTTAACTGGAATTGAACTATGG-TTTTTTAGAAGATTA
TCTGTGTTTTTAGTGAGGAACTTTGCTGGGCATAGTGAAGAACTTTCA--TTTTCATTTGCAAGTGATAAATAAACAGGA
CCAGGAGCTGGAGAACTTTATAAATAGGTTTTCTGCACTTTGTTAGAAATATTAAAGAACTTTCCTAGAAAATGTATTTG
GGACC-GAAGAACTTTATAAACAACTTGTCTGAACTTTGATGAAAA-GTTTATGAAACTTTTTT-GGAAATATATCAATA
TTAGA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr7B_1365
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CGAATAAGGCGTTTACTAACTGGTTGTGCGC-GC--AACGCGAATCACAGCCG-CTGCTCCAACATATGGATCCGG
GCCCTTTGCATGTGC-------ATGCCTCTCTGCCTCGCTTTTCTTTCCCATGG--------ACTGACAAATGCATGGCT
ACAGTACAGTACACATGCATGCCTAGGTTGTCTTTCCTCTCTTCAAAAACTTTGTTACTTTTAGTTGTCTTTTAACAGTT
TAATCAAAATTT-GTTTTTGAAACTTCATATATATTTGAACTCCTGATGCCAAGATCTT---------------------
CAGAACAAGATCAGGTTTGTATAATTTTTTT--AATACCATTTTTAACTAGAATTGCAATATGG-GTTTTTAGAAAATTA
TCAGTGTTTTTAGTGAGGAACTTTGCTGGGCATAGTGAAGAACTTCTCATTTTCATTTGCAAAGTGATAAATAAACAGGA
GCAGGAGCTGAGGAACTTTATAAATAGGTTTTCTGTACTTTACTAGAAATATTAAAGAACTTTTCTAGAAAATGTATCTG
GAA-CAGAAGAACATTATAAACAGCTTGTCTGAACTTTGATGAAAA-GTTTATGAAACTTTTTT-AGAAATATATCAATG
TTGGACTCGTTTCGTAGAG---CTAGCCATGAGAAACTCAAATACATAAACGAATTCAAATTTGCATAGTTTATTTAGAA
GTTA--GTGACATATTAA-----TTTTGCTAGCAAATATGGTGAAGTAGCCCACG---CGTCCCTTCTGTACCTCATGTC
AGATTTTTA-G------AATAGGGCATATTGATGTTGACATACATGCATGGGACCAGCTGCATGTTGATATGG-CGTCTA
GCATGGATGGGTGGA-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr6A_1365
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CGAATATGGCATTTTCTAATTGATTGTGCGC-GC--AACGTCAATCACAGCCG-CTGCTTCAACATATGGATCCAG
GCCCTTTGCATGTGC-------ATGCCCCTCTGCCTCTCTTTTCTTTCCCATGGACTA----------------------
----------ACACATGCATGCCTAGGTTGTCTTTTCTCTCTCCAAAAACTTTGTTACTTTTACTTGTCTTTCAACAGTT
TAATCAAAATTT-GTTACTGAAACTTTATATATATTTGAACTCCTGACGCCAAGATCCTCGGAACAAGATCAGGCTTGGA
C---------------------AATTTTTGA--ACACA-ATTTTTAACAGAAATTGAAATATGGTTTTTTTAGAAGATTA
TCTGTGTTTTCAGTGAGGAACTTTGTTGGGCATAGTGAAGAACTTTTCATTTTCGTTTGCAAAGTGATAAATAAACTGGA
CCAGCAGTTGAAGAACTTTATAAATAGTGTTTATGCACTTTGTTAGAAATATTAAAGAACTTCGCTAGAAAATGTATTTG
GAACC-AAAGAACTTTATAAACAGCTTGTCTGAACTTTGATTAAAA-GTTTATGAAACTTTGTT-AGAAATATATCAATA
TTGGACTTGTTTTGTTGAG---CTAGCCGTGAGAAACCTAAATACATAAATTAATTCAAATTTGCACAGTTTATTTAGAA
GTTATGGCGACATATTAA-----TTTTGCTAGCAAATATGATGGAGTAGCCCACC---TATGCCTTCTGTACCTCGTGTC
AGATTTTTA-A------TATAGGGCCTATTGATGTTGACATGCATGCATGGGAGCAGCTGCATGTTGATTTGA-CGTGTA
AAATGGATGGGTGGAC----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr7B_1369
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TAAGGCGTTTCCTAACTGGTTGTGCGC-GCGCAACGCCAATCATAGCCCACTGCTCCAACATATGGATCCGG
GCCCTTTGCATGTGC-------ATGGCTATAG------------------------------------------------
-T-----AGTACACCTGCATGCCTAGGTTGTCTTTCCTCTCTCCCAAAACTTTGTTACTTTTAGTTGTCTTTTAACAGTT
TAATCAAAATTT-GTTTTTGAAACTTTATATATATTTGAACTCCTGACACCAAGATCTT---------------------
---------------------TAATTTTTGA--ACACATTAGTTTAACTAGAATTGGAATATGATTTTTTTAGAAGATTA
TCAGTGTTTTCAGTGAGGAACTTTGCTTGGCATAGTGAAGAACTTTTCATTTTTATTTGCAAAGTGATAAATAAACAGGA
CCAGGAGCTGAGGAGCTTTATAAATAGGTTTCCTAAACTTTGTTAGAAATATTAAAGAACTTCTCTACAAAATGTATCTG
AAACT-GAAGAACTTTGTAAACAGCTTGTCTGAACTTTGATGAAAT-GTTTATGGAACTTTTTTTGGAAATATATTAATA
TTGGACTTGTTTTGTAGAG---CTAGCCGTGAGAAACTCAAATACATAAATGAATTCAAATTTGCATAATTTATTTAGAA
GTTATGGTGACATATTAA-----TTT-GCTAGCAAATATGGTGAAGTAGCCCACCACAGAGGCCTTCTGTACCTTGTGTC
AGATTTTTA-G------TATAGGGCCTATTCATGTTGACATGCATGCATGGGACCAGCTGCATGTTGATTTGA-CGTCTA
GAAAGGATGGGTGGA-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr7D_1387
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GTTGTGCGCGGC--AACGCCAATCACAGCCG-CTGCTCCAACATATGGATCCAG
GCCCTTTGCATGTGC-------ATGCCCCTCTGCCTCTCTTTTCTTTCCCATGGACTG----------------------
----------ACACATGCATGCATAGGTTGTCTTTTCTCTCTCCAAAAACTTTGTTACTTTTAGTTGTCTTTTAACAGTT
TAATCAAAAATT-GTTTTTGAAACTTTATATATATTTGAACTCCTGACGCCAAGATCTT---------------------
TAGAACAAGATCAGGCTTGGATAATTTTTGA--ACACA-TTTTTTAACTGAAATTGAAATATGG-TTTTTTAGAAGATTA
TCAGTGTTTTCAGTGAGTAACTTTGTTGGGCATAGTGAAGAACTTTTAATTTTCATTTGCAAAGTGATAAATGAACAGGA
CCAGGAGTTGAAGAACTTTATAAATAGTGTTTCTGCACTTTGTTAGAAATATTAAAGAACTTTGCTAGAAAATGTATTTG
GAACC-GAAGAACTTTATAAATAGCTTATCTCAATTTTGATGAAAA-GTTTACGAAACTTTGTT-ACAAATATATCAATA
TTAGACTTGTTTCGTAGAGGAGCTAGCCACGAGAAACTCAAATACATAAATAAATTTAAATTTGCACAGTTTATTTAGAA
GTTATGGTGACATACTAA-----TTTCGCAAGCAAATATGGCGGAGTAGCCCACC---GCTGCCTTCTGTACCACCAGGC
AGATTTTAGTA------TATAAGACCTATTGATGTTGACATTCATGCATGGGACAAACTGCATGTTGATTTGA-CGTCTA
AGATG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr3A_1457
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------GCATGCCTCTCTGCCATTCTTTTCTTTCCCATGGACTGACTCACTGACACATGCATGGCT
AC-----AGTACACATGCATGACTAGGTTGTCTTTCCTCTCTTCAAAAACTTTGTTACTTTTAGTTGTCTTTTAACAGTT
TAATCAAAATCT-GTTTTTAAAACTTTATATATATTTGAACTCCTGACGCCAAGATCTT---------------------
CAGAACAAGATCATGTTTGGATAATTTTCTA--ACACA-TTTTGTATCTGGAATTGAACTATGG-TTTTTTAGAAGATTA
TCAGTGTTTTCAGTGAGGAACTTTGCTGGGCATAGTGAAGAAATTTTCATTTTTCATTTGCAAGTGATAAATAAACAGGA
CCAAGAGCTGGAGAACTTTATAAATAGGTTTTCTGCACTTTGTTAGAAATATTAAAGAACTTTCCTAGAAAATGTATGTG
GGACC-GAAGAACTTTATAAACAACTTGTCTGAACTTTGATGAAAA-GTTTATGAAACTTTTTT-GGAAATATATCAATA
TTAGACTTGTTTCGTAGAG---CTAGCCGTGAGAAACTCAAATACATAAACAAATTCATATTTGCACAGTTTATTTAGAA
GTTATGGTGACATATTAA-----TTTTGCTAGCAAATATGGTGAAGTAGCCCACC---GATGGCTTATGTACCTTGTGTC
AGGATTTTA-G------TATAGGGCTTATTGCTGTTGACATGCATGTATGGGACCAGCTGCATGTTGGTTTGA-CATCTA
GGATGGATGGGTGGCTC---------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr7D_1568
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTGTCTTTTAGCAGTT
TAATCAAATTTT-GTTTTTGAAACTTTATATATATTTGAACTCCTGACAC------------------------------
-------------------------------------ATTTTTTTAACTGGAATTGAAATATGC-TTTTTTAGACGATTA
TCAGTGTTTTCAGTGAGGAACTTTGCTTGACATAGTGAAGAACTTTTCATTTTCATTTCCAAAGTGATAAATAAACATGA
CCAGGAGCTGAGGAACTTTATAAATAGGTTATATGCACTTTGTTAGAAATATTAAAGAACTTTTCTAGAAAATGTATCCA
GAACC-GAAGAACTTTGTAAACATCTTGTCTGAACTTTGATGAAAT-GTTTATGAAACTTTTTT-GGAAATATATCAATA
TTAAACTTGTTTCGTAGAG---CTAGCCGCGAGAAACTCAAATACATAAACGAATTCAAATTTGCATAGTTTATTTAGAA
GTTATGGTGACATATTAA-----TTT-GCTAGCAAATATGGTGAAGTAGCCCACCACGGATGCCTTCTGTACCTTGTGTC
AGATTTTTA-GTACGAGTATATGGCCTATTGATGTTGACATGCATGCATGGGACCAGCTGCATGTTGATTTGATCGTGTA
GGATGGATGGGTGGA-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>chr3D_1573
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TTTTAACAGTT
GAATCAAAATTT-GTTTTTGAAACTTTATATATATTTGAACTCCTGATGCCAAGATCTT---------------------
CAGAACAAGATCAGGCCTGGATAATTTTTGA--ACATATTTTTTTAACTGGAATTGAAATATGG-GTTTTTAGAAAATTA
TCAGTGTTTTCAGTGAGGAACTTTGCTGGGCATAGTGAAGAACTTTTCATTTTCATTTGCAAAGGGATAAATAAACCGGA
CCAGGAGCT-GAGAACTTTATAAATAGGTTTTCTGTACTTTGTTAGAAATGTCAAATAACTTTTCTAGAAAATGCATTTG
GAACC-GAAGAACTTTATAAACAGCTTGTCTAAACTTTGATGAAAAAGTGTATGAAAC-TTTTT-AGAAATATATCAATA
TTGGACTTGTTTCGCAGAG---CTAGCCGTAAGAAACTTAAATACATAAATGAATTCAAATTTTCATAGTTTATTTAGAA
GTTATGGTGACATACGTATTAATTTT-GCTAGTAAATATGGTGAAGTAGCCCACC---GGTCCCTTCTGTACCTCGTGTC
AGATTTTTA-GTACG--TATAGGGCCTACTGATGTTGACATGCATGCATGGGACCAGCCGCATGTTGATTTGA-CGTCTA
GCATGGACGGGTGGA-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS----------------------------------------------------------------------------
---S-----------SSSSS------------S-----------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S-------S-----------------------------------------------------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_681
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CATCATCCGGACGCATCTCA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>reverse_2327
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------CGCAACAACACGACGAAAGT------------------------------------------------------
-----------------------------
