>input_sequence_82995
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-----ATGGCGTCTGTGGGGTTCGGCAGCAGCGTGGCGGCCGTGGCGC------------CGGCGGGGAGGACG------
---AGCCTTCGCCCGCAGCGGACGCGGCTGGCGGTGCCGGCGGCCACGAGGGGCACGCCGGCTCCGGCCAAGAAGGAGAA
GAGCATCCTGGACTTCATCGTCAGCGCCATCGTCAAGGACGAGCAGGAGTTCATCGAGACCAACCCGCTGCTCAACAAGG
TGGACGGCCCGGCGCCCTCCGCCGGTGGCACCGCCTCCAGGAAGGCCGGCGGCACCACCTCCGGCAAGAAGCCCGCGGCC
GGCAGCGAGGGCGGCGGCGGGTTCAACCTCGGCGGCCTCTTCGCCAAGAAAGGCTAG-----------------------
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>chr5D_1_TraesCS5D01G502900
GAGCCTACCACTAACATTTATTATGCTCAAATTTGCTCTTTCTCAAGTATCCTTGTAGAAATGCCTTTGCGTGTTCTTTA
CATCCGGTTAAAGGGTTTTGATCGTCTATGAGACATTCTTTGGGCGC-TTTTACCCCTCTCTGCATATGTCACTTACATG
TAGGG-CCCCGTAATAAAAAGAAAAGGATTAAAATCTTTCCCAACCCCCTCTCCCT------------------------
-------------------------------------------------CTCTCACTTACATGTGGGTCCAGGTCAAAGC
TTGCCGAGTCAACAAGGGCATGCCAAAGGGGCCCATATGTCCATTCAT-AGCTGGATTTGTGTTTTTGGTTCATGAGTCA
GTCGTGTTTTA---AACTTTGGATGTGTGGATT-GTTTGTATTGCACATATATTCCCGCAAACAAAAAAAATC-------
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---------------TTGCATCTGTATCGTCATTTGTCTTGGGATCTTTCTGTGAGTTTTTTTCTTTTACGGTATAAGAG
TCTGTATCGTCATTTGTTTTGGGATCTTTTTTTACTGGTACTTCCTCCATTCCTAAATATAAGTCTTTTTAGAGATTCTA
CTATGGACTATATACGGAGCAAAATGAGTGAATCTACACTAAAATATGTCTATATACATCCATATGTACTAATTCATAGT
GGAATCTTTAAAAAGACTTATACTTTGGAACGGAGGGAGTAAGAGACGAAGCAGCGCTGGCCCTACAACCGAATTGATCC
C----ACTTGCGCTTGTGGCAAGCCCACGTTGAAGAGCCACGCCGACCTCTCGCGGGACGCACGGCCAGGGCCAGTGCAC
ACTGCACCCCACCCGCCGGTGGCTGGCACCGGCACGCACA----------CGCGTGGTGAGGATAAGCCGCCTGTGGCCA
CCATCCCCTCCCGATCGTCTCCCTGCCTCCCACGCATATATGGCCACCCGCCGGCCTCCCGATCGCCACCCTCACCAAGT
TCAACA--GTCCCACCATAC----ATACATTTCGCCGCCAAGAATATCCAAGGGATCCAACCAAGAGAGCTAGTA---GT
TAACAATGGCGTCTGTGGGGTTCGGCAGCAGCGTGGCGGCCGTGGCGC------------CGGCGGGGAGGACG------
---AGCCTTCGCCCGCAGCGGACGCGGCTGGCGGTGCCGGCGGCCACGAGGGGCACGCCGGCTCCGGCCAAGAAGGAGAA
GAGCATCCTGGACTTCATCGTCAGCGCCATCGTCAAGGACGAGCAGGAGTTCATCGAGACCAACCCGCTGCTCAACAAGG
TGGACGGCCCGGCGCCCTCCGCCGGTGGCACCGCCTCCAGGAAGGCCGGCGGCACCACCTCCGGCAAGAAGCCCGCGGCC
GGCAGCGAGGGCGGCGGCGGGTTCAACCTCGGCGGCCTCTTCGCCAAGAAAGGCTAGGCTGAACCAGCCCGCCTAATACG
TAGGCGCGCGCTTGGGTGCGTGCTTCCATCTCATAGCTCGATTTATTGCTGTAACTCCATGAAAAACATCGCAGAGATTT
GCATA----TATGTATATGCGGTGTGACTACTCAAATGATTCTTGCTGTGATGCCTTATAGATTTGTATTCTTCTTCACA
CAACTTCTGGAGTAATTTCTCTCATGT--------TGTGA---------TGTACCCATGTTAAGC-TTGCTTTGCTAAGA
TCCCAATACCGACAACCTTTATATCTCTGGGACTGCTGATTTTAAACATAAGTATATATATATATATATCTAGATCATAG
CCAAAGATTGGTTGGCTGTGATATTCCAATTTATTTACAACGATTAACAAAACTGAAAATATCAGAGAGAGAAACAGAGG
AAGCTCTTGGGTCACAGCAACAGCAAATTCCCGGTGTTGAAATGGCCAGATCTTTTCCACTCCTTTATTTTGTATGGTTG
TCCTGCTCAACTTCTTGAGCAGAGATCAACAATTGGATAGAGTTTGTGGCAAGTCCTGCAAACTGCCTTCTGCATGCTTG
CTTGACACAGTTACGAAACAAATCTGGGAAAGAATAAACAGAATGTTTCACGAAATCCCGATCGACTCGTCAAGTTCAAA
CGGACTCTGATCGTATATCTGTACAG----TTGATAGGAGGCCTTGCCGTGCGAATCTTTTCGTGTTACAGTCACGCCGG
GAGAATGAACATTAGGACTTGGACATCTTTGCCTTTGCGAAGAATATCCCAGCAAAAAGGCCTGCAGATGTTAAGATCGA
GTAGAAACATATATCAATCAGAGATACTCTTGGGGTAGCGAGGTAACATGCAACATAACTCAACACTTGATGAAAGAAAA
TACTCACCGAAAACTATGCTGAACAAATTTTCCACGCTAACAGGGACGTTGAATAGCAAGACACCAGCGACCGAAATGGG
TATCTTGTTTAGTGAGCCAACAAGGCTGAGAAAAGGAGAAAAT
>chr5B_4
---CCTACCACCGACATTTACTATGCTCAAATTTGCTCTTGCTCAAGTATCCTTGTAGAAATGCCTTTGTGTGTTGTTTC
TATCCGGTTAAAGGTTTTTGACCATCTATGAGACATTCTCTGGATGTTTTTTACCCCTCTCTGCATATGCCACTTACATG
TGAGCTCCCAG---AAAAATGAAAAGGATTAAAATCTCTCCCAACCCGCTCTCTCTCTCTCTCTCACTTACATGTGGGGC
CCCCATAATAAAAAGAAAAGATTAAAATCTCTCCCAACCCCCTCTCCCCCTCTCGCTTACACGTGGGCCCATGTCAAAGC
TTGCCTAGTCAACAAGAACAGGTCAAAGGGGCCCACATCTCCATTTCACAGCTGGATTTGTGTTTTTTGTTCATGATTCA
GTCGTGTTTGATTGAACTTTGGACGTGCGGATTGGTTTGTATTGCATTTATATTCCCGCAAAAAATATTGCATGCATATA
CG------------------------------------------------------------------------------
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--------------------------TCGTCATTTGGCTTGGGATCTTTTTGTGACTTTTTTACGGCA------------
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----------------------------------------AAGAGACGAAGCAACGCTGGCCCTACAACCGAGTCGATCC
CTGCCACTCGCGCTTGTGCCGAGC-------------CCGCGCCGACCTCTCGCGGGACGCACGGCCAG-----------
--TGCACCCCACCCGCCGGTGGCTGGCACCGTGGCACGCATACGTAGGTGC---------GGATAAGCCGCCTGTGGCCA
CCATCCCCTCCCGATCGCCTCCCTGCCTCCCACGCATATATGGCCACCCGCCCGCCTCCCGATCGCCACCCTCACCAAGT
TCAACA--GTCCCACCATACATCCATATCTATCGCCGCCAAGAATCGCCGAGAAATCCAG----GAGAGCCAGTA---GC
TAGCAATGGCGTCTGTGGGGTTCGGCAGCAGCGTGGCGGCCGTGGCGCCGGCGTTGTCGACGGCGGGGAGGACG------
---AGCCTTCGCCCGCAGCGGACGCGGCTGGCGGTGCCGGCGGCGACGAGGGGCACGCCGGCTCCGGCCAAGAAGGAGAA
GAGCATCCTGGACTTCATCGTCAGCGCCATCGTCAAGGACGAGCAGGAGTTCATCGAGACCAACCCGCTGCTCAACAAGG
TGGACGGCCCGGCGCCCTCCGCCGGCGGCACCGCCTCCAGGAAGGCCGGCGGCACCACCGCCGGCAAGAAGCCCGCGGCC
GACAGCGAGGGCGGCGGCGGGTTCAACCTCGGCGGCCTCTTCGCCAAGAAAGGCTAGGCTGAACCAGCCCGCCTAATACG
TAGGCGCGCGCTTGGGTGCGTGCTTCGATCTCATAGCTCGATTTATTGCTGTAACTCCATGAAAAACATCGCAGAGATCT
GCATATATGTACGTACACGCGGTGTGACTACTCAAACGATTCTTGCTGTGATGCCTTATAGATTTGTATTCTTCTTCACA
CAACTTCTGGAGTAATTTCTCTCAAAGGCTCAGTATGTGCATGTTGTATTGTACCCATGTTAAGC-TTGCTTTGCTAAGA
TCCCAATACTGACAACCTTTATATGTACCCATGTCCG-----------------------TACATATATCTAAATCATAG
CCAAAGATTGGTTGGCTGTGATATTCCAATTTATTTACAGCGATTAACAAA-CTGAAAAAATCAGAGAGAGGAACAGAGG
AAGCTCTTGGGTCACACCAACAACAAATTCCCAGTGTTGAAATGGCCAAATATTTTC----CCTTTATTTTGTATGGTTG
TCCTGCTCAACTTCTTGAGCAGAGATCAACAACTGGATAGAGTCTGTGGCAAGTCTTGCAAACTGCCTTCTGCATGCATG
CTTGACACAGTTATGAAACAAATCTGGGAAAGAATAAACAGAATGTTTCACGAAATCCCGATCGACTCGACAAGGTCAAA
CGGACTCTGATCATATATCTGTACAGTTGATTGATAGGAGGCCTTGCCGTGC-AACCTTTTCGTGTTACAGTCACGCCAT
GCAAATGAGCATTAGGACTTGGACATCTTTGCCTTTGCGAAGAATATCCCAGCGAAAAGACCTGCAGATGTTGAGATCGA
GTAGAAAACCATATCAATCAGGGATACTCTTGGGGTAGCGAGGTAACATGCGGCATAACTCAACACTTGATGAAAGAAAA
TACTCACCGAAAACTATGCTGAACAAATTTTCCACGCTAACAGGGACGTTGAATAGCAAGACACCAGCGACCGAAATGGG
TATCTTGTTTAGTGAGCCAACAAGACTAAAAAGGAGA------
>chr5A_90
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---------AAAGGGTTTTGACCGTCTATTAGACGTTCTTTGGATGTTTTTTAACCCCCTCTGCATATGTAACTTACATG
TGGGA-CCCAG---TAAAAAGAAAAGGATTAAAATCTCTCCCAACCCCTTCCG---------------------------
-----------------------------------------------CCCTCTCACTTACATGTGGGGCCAGGTCAAAGC
TTGCCCAGCCAGCAAGGGCAAGTCAAAGGGACCCATATGTCCATTCAT-AGCTGGATTTGTGTTTTTGGTTCATGAGTCA
GTCCTGTTTTA---AACTTTGGATCTGTGGATT-GTTTGTATTGCATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTGCATCTGTATCGTCATTTGTCTTGGGATCTTTCTGTGAGTTTTTT---TTTACGGTATAAGAG
TCTGTATCGTCATTTGCTTTGGGATCTTTTTTTACTGGTAAGAGAC----------------------------------
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-------------------------------------------AGACGAAGCAACGCTGGCCCTACAACCGAATTGATCC
C----ACTTGCGCTTGTGCCGAGC-------------CCACGCTGACCTCTCGCGGGACGCACGGCCAG-----------
--TGCACTGCCGATGGC--------------TGGCACGCACACGTAGCTGCGCGTGGTGAGGATAAGCCGCCTGTGGCCA
CCATCCCCTCCCGATCGTCTCCCTGCCTCCCACGCATATATGGCCG-----------CCCGATCGCCACCCTCACCAAGT
TCAACACAGTCCCACCATAC----ATACATTTCGCCGCCAAGAATCGCCAAGAAATCCAC----GAGAGCCACCTAGCGT
TAGCAATGGCATCGGTGGGGTTCGGCAGCAGCGTGGCGGCAGTGGCGC------------CGGCGTCGTCGGCGGGGAGG
AGTAGCCTTCGCCCGCAGCGGACGCGGCTGGCGGTGCCGGCGGCGACGAGGGGCACGCCGGCTCCGGCCAAGAAGGAGAA
GAGCATCCTCGACTTCATCGTCAGCGCCATCGTCAAGGACGAGCAGGAGTTCATCGAGACCAACCCGCTGCTCAACAAGG
TGGACGGCCCGGCTCCGTCCACGGGCGGCACCGCCTCCAGGAAGGCCGGCGGCACCACCTCCGGCAAGAAGCCCGCGGCC
GGCAGCGAGGGCGGCGGCGGGTTCAACCTCGGCGGCCTCTTCGCCAAGAAAGGCTGAACTACATAAGCACGT--------
---GCGCGCGCTTGGGTGCGTGCTTCGATCTCATAGCTCGATTTATTGCTGTAACTCCATGGAAAACATCGCAGAGATCT
GCATA----TATGTACACGCGGTGTAACTACTCAAATGATTCTTGCTGTGATGCCTTATAGATTTGTATTCTTCTTCACA
CAACTTCTGGAGTAATTTCTCTCAAAGGCTCAGTATGTCA---------TATACCCATGTTAAGCTTTGCTTTGCTAAGA
TCCCAATACCGACAACCTTTATATCTCTGGGACTGCTGATTTTAAACATAACTAGTATATACGG-ATATCTAGATCATAG
CCAAAGATTGGTTGGCTGTGATATTCCAATTTATTTACAATGATTAAGAAA-CTGAAAAATATC---AGAGGAACAGAGG
AAGCTCTTGGGGCACAGCAACAGCAAATTCCCGGTGTTGAAATGGCCAAATCTTTTC----CCTTTATTTTGTATGGTTG
TTCTGCTCAACTTCTTGAGCAGAGATCAACAATTGGATAGAAGCTGTGACAAGTCCTGCAAACTGCCTTCTGCATGC---
--------AGTTATGAAACAAATCCGGGAAAGAATAAACAGAATGTTTCACGAAATCCCAATCGACTCGACAAGTTCAAA
CGGACTCTGATCGTATATCTGTACAG----TTGATAGGAGGCCTTGCCGTGCGAATATTTTCGTGTTACAGTCGCGCCAG
GAGAGTGAACATTAGGACTTGGACATCTTTGCCTTTGCGAAGAATATCCCAGCAAAAAGACCTGCAGATGTTAAGATCAA
GTACAGAGATGCATCAGAGGTTGC-ACTCATAGGGTAGCAAGGCAGCATGTTCATAACCCAGTGG--TGATGAAACAGAT
TACTTACCAAAAACTATGCTGAACAAATTTTCCACACTAACAGGAACATTGAATAGCAAGACACCAGCAACCGAAATGGG
TATCTTGTTTAGTGAGCCAACAAGACTGAAAGGGAGAAAA---
>SNPs
SSS--------SS-------S-------------------S----------------------------S-----S---S
S--------------------S---------------------SS-S---------------------------------
-S--S----S-SSS-----------------------S---------------S--------------------------
-------------------------------------------------------------------S------------
-----S--------------S-S---------------------------------------------------------
----------------------------------------------S---------------S--S-SSSSSS-------
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--------------------------------------------------------------S-S---------------
----------------S-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S--------------------------
------------------S-S---SSSSSSSSSSSSS--------------------------------SSSSSSSSSSS
SS-----------------------------SSS-S-S------------------------------------------
----------------------------------------------------S---------------------------
---------------------------------------------SS-----SS-----SSSSS------S---------
--S-----------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
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-------------------------S------------------------------------------------------
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--------------------------S---------------------------------------------------S-
---------------S-S--------------------------------------------------------------
------------------------SSS-----------------------------------------------------
---------------------------------------------------S--SSSSSS--S-----------------
---------------------------------------------------S-------S-----------S--------
------------------------------------------------S--------SSSS-------------------
-------------------------------------------S---------------------------------S--
-------------S-------------------------------------------------------S----------
------------------------------------------------------------------------------S-
-----------------------------------------------------------S--------------------
-------S-------------S-----------------------------SS---------------------------
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------------------------S----S--SSS--S--SSS
>forward_172
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------------------------------------------------------------------------ACTTACAT
GTAGGGCCCCGT--------------------------------------------------------------------
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>reverse_2098
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-----------------TGCGGTGTGACTACTCAAATGA-----------------------------------------
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