>input_sequence_82989
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------ATGGCGGAGGAGAATCAGACGGTGCTGGTACGGTGCGCGGACCTCGTCCGGGTCC
AGCTGCCGGCGTCGCTGGCGCAGCGGGCGGGGCGCGTCGCGGCGGCGCTGGAAGCCGGGGAGCGCGTGGTGGAGCTGCCG
CGAGGGGTCTCCGGCAAGGGCCTGGCGACGGCGACGGCGTACTACGAGGCGCGCGCGGAGGCGGAGGCGTGCGGCGTGGA
TGGTGCCGAGTTCGACGGCGAGTTCGTTCAAGGGCTGACGCACGACGCGGCCATCGACCTCATCTACGCCGCCCACCACC
TCGGCGACCAGGCGCTCTTCAACCTCTTTGTGGGCTACAGGGCTAATTGCTTCTAA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>chr5B_1_TraesCS5B01G191000
TAACCATTTGAGATAGACTCAGTTCACAGTCTTATTACTACTCCCTCCGTTCAGAATTACTTGTCGTAGAAATAGATGTA
TCTAGATATATTTTAGTTCTAGATACATCCATTTTCGAGACAAGTAATTCCGAACGGAGAGTAGTTAATAAAGAGGAGAT
ATAACTATAAGGAAGTGGGAACTTTTGTTTTCTTTTCAGGGAAAGTTTAGGTTTTTCCATAAGCGCTGGGAAATTCAAAT
CGCCCACCAAAAACAGATGAGAAAGGTGTAGCTGCTTCAGGGTGTAAA--TGCACCCACATAAATAACAACTTCAGAAAA
GAAAAAAAAT--------------------AATCTAATTTTGTCTTTTTACATCAAACAAGACCAAAAGTTTTTAGCTTC
TTGCACATTTTTGTGAGCAAATAACATTG-AGGAGCCCTAATAGAAAAAACAAAATCATTGCTCAAAAGTGAACAAAACT
TCGAACACTGATTTTGTTATTTTTGGCGAGGGCTCCTCGAATGTTATTTGTGTCCAAAAATTTGCAAGGAAATA------
---------------------------------------ATTCTGTTTTGTATTTTTTTCTTATGATTTTACT-------
-----GTTCATCCGGGAGTA--GAAAATTAAACC-CCAAATGAATACAAAGGCACGCGTTTCAATCACCATCT--TATCG
TGAACGGCCACACCATGGGCGAAACAGAAACTTTT---------------------------TTTGTGTTTGGGAAGTAG
CGAAACAGACGGGGCTTCATGTTCTTGCTGCAAAAGAAATCGATTCAGAGCCGTCCCTTTTTCCGATCATACCAAGAAAC
GGGACCACAG----------------CTCGATCGATCCGAGCATCACACGTACAACGTTCTCTTCCCACAGGCCGAGTCG
GACCTGATCCCCGTGTCGTGTGTGGTGCGCACCCATATATACATACGCGCACCACCCCTCGTAGCACCCAGAA-------
-------AAATCAACCTAAACCATCGCCATCGCAACTTTGGAAGCCCCGCGCACGCAAAGCCCTAGCTAGGT---AGCAA
ACTCAGCGAGAGAAGGATAGTGTCGATGGCGGAGGAGAATCAGACGGTGCTGGTACGGTGCGCGGACCTCGTCCGGGTCC
AGCTGCCGGCGTCGCTGGCGCAGCGGGCGGGGCGCGTCGCGGCGGCGCTGGAAGCCGGGGAGCGCGTGGTGGAGCTGCCG
CGAGGGGTCTCCGGCAAGGGCCTGGCGACGGCGACGGCGTACTACGAGGCGCGCGCGGAGGCGGAGGCGTGCGGCGTGGA
TGGTGCCGAGTTCGACGGCGAGTTCGTTCAAGGGCTGACGCACGACGCGGCCATCGACCTCATCTACGCCGCCCACCACC
TCGGCGACCAGGCGCTCTTCAACCTCTTTGTGGGCTACAGGGCTAATTGCTTCTAAGTAGTAAATC------TTTTATAG
AATTAGTTTATGTTTTTTTTCAT--GGAATTCGGTTATGTTGATCGGCTGAATTTGACTTGTATTGATGCTACCTTGATT
AATCATTATGCGATATATGTGTGCCTGGAAGGAACAAATGATCCGTAGTACATTGTTTTTCTTTTTGTGAAACAGTTCGC
ATTGTCTTGGTTTTAAGATCGTGTTTTCATGCACATACCATGTCCACATCCTCTCCCGCGTGTCAGGTGTTGAACCAGAA
----ACATCGAAGCACAGCACAACAATGGAGACCAAACCAAGGACAAAAGTCACAAAACCGACAACGAAGCTTTATATAG
CAGCTCGATCAGTTTTGTCATTAAATATAGGAAGACGACACACATCCAACGACAAAAATTTGAAGCGAGTCCTGCGATGC
ACAA-GACGCCCAAGCACCAGCCACGGCGAATCTTCCAAACAACGCAACACCGAACACGCAGGGAGCAAAATCATAA-AC
TCACGAAAAACACATCCTAGCACGCACACGAATTTCCTGATGCCACCCAAACTGTGCTACACAATAGAACAAGGAAAGAA
GATGCGCATAGCAATCGGCCGGCAGAAATTATGGATGCACAAAGGGCGTGATGCCCTGATCTCTAGCCTGCATGAGGTCG
CCCAGTCCCGCAACTTTTTTTTGAGGATCTGCCACCGCTTTATTGCTTACACGAAACTAGGAATGTCGTCTGAAATAACG
TCCAGAATGACATCTGGCGGAAAAGAAAGCCAAACTTTACATAGTTCATCACCTAACCCTACCTTAGCTAACTTATCAGC
GGCTTTGTTGGCATTCCGACTAACCCACGACACCTTCGACTCCCCAAAGGTGATCAGCTTCTCCTTGATCTCTTGAACAC
TAGGGCCAAGGGCTGAGAGATCCTTTTGCGGATTGTTGATAGCAGCTACCACATTCGCATTATCCAGCTCCAGATGAATT
CTCTCAACATTTAGCTCCTCAGCAACCAGC
>chr5A_142
--------------------------------------------------------------------------------
-------------------------------------------------------------TAGTTAACAAAGAGGAGGA
ATCGTTATAAGGAAGTGGGAACTTTTGTTTTCTTTTCAGGGAAAATCTAGCTTTTTCCATTAGCGGTGGAAAATCCAAAT
TGCCCACCAAAAACAGATGAAAAAGGTGTGGCTGCCCCTCCAGGGGCAGGTGCATCCGCATGAGCAGTAACTTCAGAAAA
GAAAAATACAAAAAGAAAATTGAAAAAATAAATCTGGTTTTGTCTTTTTACATCAAACAAGATCAAAAGTTTTTAGCTTC
TTACAAAATTTCGTGAACAAATACCATTCAAGGAGCCCTCACAGAAAAAACAAAACCACTTCTCAAAAGTGAACAAAACA
TTGAACACTGATTTTGTTATTTCTGGTGAGGGCGCCTCGAATGTTATTTGTGTACGAAACTTTGCAAAAAGCTAAAAGTT
GGGATCATGTTTGATATCCAAAAAATTCAGAATTTTCCGATTCTGTTTTGTATTGTTTTCTTCTTCTAAATCCAC-TCAG
TGTAGGTGCACCCGGGAGTATAGAGAATCCAATCTCCAAATGAATACAAAGGCACGCGTTTCAATCATCATCCTATATCG
TCAACGGCCATACCATGGGCGAAACAGAAACTTTTTTGTATTATATCTCGCAAAAGAAAACTTTTTTGTATTGGAAGTAG
CGAAACAGACGGGGCTTCATGTTCTTGCTGCAAAAGAAATCGACTCAGAGCCGTCCCTTTT-CCGATCATGCCAAGGAAC
GGGACCACAG----------------CTCGATCGATCCGAGCATCACACGTACTACGTTCTCTTCCCACAGGCCGAGTCG
GACCTGATC-CCGTGTCGTGTGTGGCGCGCACCCATATATACATACGCGCACCACCCCTCGTGGCGCCCAGCGAGAAAAA
CCAACCTAAATCA----------TCGCCACCACAACTTTGGAAGCCCCGCGCACGCAAAGCCCTAGCTAGGTGGTAGCGA
ACTCAGCGAGGGAAGGATAGTGCCGATGGCCGAGGAGGATCGGACGGTGCTGGTACGGTGCGAGGACCTCGTCCGGGTCG
AGCTGCCGGCGTTGCTGGCGCAGCGGGCGGGGCGCGTCGCGGCGGCGCTGGAAGCCGGGGAGCGCGTGGTGGAGCTGCCG
CGAGGGGTCTCCGGCAAGGGCCTGGCGACGGCGGCGGCGTACTACGAGGCCCGCGCGGAGGCGGAGGCCTGCGGCGTGGA
CGGCGGCGAGTTCGACGGCGAGTTCGTCCGCGGGCTGACGCACGACGCGGCCATCGACCTCATCCACGCCGCCCACCACC
TCGGCGACCAGGCGCTCTTCAACCTCTTCGCAGGCTACAGGGCTAATCACTTCTAAGTACAGTAGTAAAGCTTTTTATAG
AGTCAGTTTATGTTTTTTTTTGTAGGGAATTCGGTTATGTTGATCGGCTGAATTTGACTTGTATTGATGCTACCTTGATT
AATCATTATGCGATATATGTGGGCTTGGAAGAAACAAATGATCCGTAGTACATTGTTTTTCTTTTTGTGAAACAGTTCAC
ATTGTCTTGGTTTTAAGGTCGTGTTTTCATGCACATATACCAT-------------------------------------
------------------------------------------G---------ACAAAACTGACAACAAAGCTTTATATAG
CAGCTCGATCAGTTTCGTTGTTAAATATAAGAAGACGACACACATCCAACGACAAAAATTTGAAGCAAGTCTTGCGATGC
ACAAGGACGCCCAAGCACCAGCCAAGGCGAATCTTCCAAACAACGGAACACCGAACACGCAGGGAGCAAAAACATAAGAC
TCACGAAAAACACATCCTAGCACGCACGCGAATTTCCTGATGCGACCCAAACTGTACTACACAATAGAACAAGGAAAGAA
GATGTGCATAGCAATCGGCCGGCAGAAATTATGGATGCACAAAGGGCGTGA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>chr5D_529
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------ATA------
---------------------------------------ATTCTGTTTTGTATTTTTTTTTCTGATTTACTATTCATCGG
TGTAGGTCCACCCGGCAGTA--GAAAATCCAATCTC----------CAAAGGCACGCGTTTCAATCATCC-----TATCG
TGAACGGCCACACCATGGGCGAAACAGAAGCCTTTTTGT--------------------------------------TAG
CGAAACAGACGGGGCTTAATGTTCTTGCTGCAAAAGAAATCGATTCGGAGCCGTCCCTATT-CCGATCATGCCAAGAAAC
GGGACCACATCTCAGCACTGCCACATCTCTATCGATCCGAGCATCACACGTACTACGTGT--------------------
-----------CGTGTCGTGTGTGGTGCGCACCCATATATACGCGCGCGCACCACCCCTCGTGGCACCCAGAA-------
-------AAATCA----------TCGCCATTGCAACTTTGGAAGCCCCGCGCACGCAAAGCCCTAGCTAGGT---AGCAA
ACTCAGCGAGAGAAGGATAGTGTCGATGGCGGAGGAGGATCAGACGGTGGTGGTACGGTGCGCGGACCTCGTCCGGGTCG
AGCTGCCGGCGTCGCTGGCGCAGCGGGCGGGACGCGTCGCGGCGGCGCTCGAAGAAGGGGAGCGCGTGGTGGAGCTGCCG
CGAGGGGTCTCCGGCAAGGGCCTGGCGACGGCGGCGGCGTACTACGAGGCCCGCGCGGAGGCGGAGGCGTGCGGCGTGGA
CGGCGGCGAGTTCGACGGCGAGTTCGTGCGCGGGCTGACGCACGACGCGGCCATCGACCTCATCCACGCCGCCCACCACC
TTGGCGACCAGGCGCTCTTCAACCTCTTTGTGGGCTACAGGGCTAATTACTTCTAAAGC---------------TTATAT
AATTAGTTTATGTTTCTAGCG---GGGAATTAGTTTATGTTGATCCGCTGAATTTAACTTGTATTGATGCTACCTTGATT
AATCATTATGCGATATATGTGTGCCTGGAAGAAACAAATGATCCGTAGTACATTGTTTTTCTTGTTGTCA--------AC
ATTCTCTTGGTTTTAAGATGGTGTTTTCATGCACATACCATGTCCACATCCTCTCCCGCGTGTCCGGTGTTGAACCAGGA
ACATACATCGAAGCACAGCAGAACAATGGAGACAAAACCAAGG---------ACAAAACTGACAAGAAAACTTTATATAG
CAGCTCGATCAGTTTAT------AATATAAGAAGACGACACACATCCAACGACAAAAATTTGAAGCGAGTCTTGCGATGC
ACAA-GACGCCCAAGCACCAGCCACGGCGAATCTTCCAAACAACGGAACACCGAACACGCAGGGAGCAAGATCATAA-AC
TCACGAAAAACACATCCTAGCACGCACACGAATGTCCTGATGCCACCCAAACTGTACTACACAATAGAACAAGGAAAGTT
T-TGCGCATAGCAAT----CGGCAGAAATTATGGATGCACAAAGGGCGTGATGCCCTGATCTCTAGCCTGCATGAGGTCG
CCCAGTCCCGCAGCTT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---------SS
--SSS---------------------------------------S-S---S---------S----S---S----S-----
S-------------------S--------S-----SS-SSSSS-SSS-------S--S---S-SS-SS------------
------S-SS-------------------------SS-------------------------S-----------------
--S--S-S---S----S------S----S----------S-S-------------S--S-S------------------S
-S--------------------S---S------S-------------------S-S---S-------SS-S---------
--------------------------------------------------------------S-SS--SSS---------
-------S--S-----------------SS--S----------------------------------S----S-------
-----------------------------------------------------------------S---S-S--------
-------------------------------------------------------------S--------S---------
-----------------------------------------------------S--------------------------
---------S----------------------------------------------------S-----------------
-------------SSSSSSSSSS---------------------------------------------------------
-------------------------------------S-----------------------------------------S
--------------------------------------------------------------------------------
---------------------------------S----------------S-----------------------------
S--S-S---------------------S-SS---------------------------------S---------------
------------------------------------------------S----------SSSS-SS--------------
--------------------SS----------------------------------------------------------
-------------------------------S----------------------------------------------S-
----------------------------------------------------------------S-------------S-
--------------------S------------S---------SSSSSSSSS-------S------S-------------
---------------S--SS---------S-----------------------------------------S--------
---------------------------------------------S----------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_285
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------GTGTAGCTGCTTCAGGGTGT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>reverse_2329
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TGGCATTCCGACTAACCCAC----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
