>input_sequence_82964
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-----------------------------------------------------------------------------ATG
AGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGCCGGTGGCGTGGAGCCCGAAGCTGTACATCACGCTGGTGCGCGG
GCTCCCCGGGACGCGCAAGCTCCACCGCCGCACCCTGGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACC
GCACCACGCCCTCCCTCCTCGGGATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCGAGGAGATGTACAACGCG
CGGAAGCAGGCCGACGAGCAGCGCCGCGCCCTCAGGCCCCCGCTCGTCGTCTCGCACGCCCCGCCGCCCAAGCCGGCCGC
CGCCGCGCCGGAGGGCGCGGGCCAGTAG----------------------------------------------------
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>chr2B_1_TraesCS2B01G081600
GGTCACAGGTCACATTATATTTCTATGGCGGGTGCTTCGTAGCACTTCACACTCAATAAGGTAACTATCATATCCACCAG
GTTCACCCAAGTTGAATACTTTGATGGCAACTAGGCTCTTGTCGGATTTGAACCTACCAACATAAACTAAACCAGTATAG
GTTGTGCTGATTGTATGGACCGAAGAAAACTAGTTGGTAGCTTTAAGAATGTCCTGGTATGACACTCTCTTCAGCTTCTT
CTCATCATGGCACGGGGCTGTATGCACTTCTCTTCTATTAGGAAACACCTTGGACACAAGATCCCATCGTGAAGACGAAA
ACAACCCTTTCTTCCAAAGAGTGAGCAGAAACCATAACAACACCAGGGAACCAATACTAAGTGTTGGTAGTACAATTAGC
AGCGAGGTCGCCAGGAATGACAGATGGTGTTTTGATTTAGTCACTAAAGCTGAGATGCGAGGACAAACTGGTAATGCTGG
CCTGAAGGAATTTCTTATTTTTATCAACTTGGAGGAATTTAAACAGAGTCCCTTGTTGCCACCCAGAACTACTGCAGCAT
ATTTCTCAAAGATCCCACTAGTAGGAACAGACCCTTCCAAGTTATTGTAAGACAGATCAAGTTGCTTCAGCATATCAAAT
CGCTCAAAGAATTCAGGCACGGCACCGGATAAGTCATTATGAGAAAGATTAATCTGCTGGGTTGATACTAGTATATTGGG
GGTTTTGTTTTGGAGAAAATGTATTGGGGTTGTAGGTGCCGCTCATTTGCCGAACATTTCCACTTAGCAGATGGGCTGTT
AGAAGGTCAATCTGCGGCCGGCCCACTTAGCCGAACATTTCCACTTTACTTTAGTCGGCCTTCTTATAGC----------
-------CCATTTCTCGATAGATCTCCGAGCTGACCAGCCCAACT-CTCCCCACTCCGGCAAAAGGCA----ACAGAGGT
CTAGGGTTCCGGCCGCCGGAGCAGATCGCAC------CACACGGAGGAGCAGAGCCGCCAGAGGG---------GAGATG
AGCGGGAGCGCGTTCAACGCGTTCAAGTCGCGGGTGCCGGTGGCGTGGAGCCCGAAGCTGTACATCACGCTGGTGCGCGG
GCTCCCCGGGACGCGCAAGCTCCACCGCCGCACCCTGGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACC
GCACCACGCCCTCCCTCCTCGGGATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCGAGGAGATGTACAACGCG
CGGAAGCAGGCCGACGAGCAGCGCCGCGCCCTCAGGCCCCCGCTCGTCGTCTCGCACGCCCCGCCGCCCAAGCCGGCCGC
CGCCGCGCCGGAGGGCGCGGGCCAGTAGTCGCCTCCGGTTAGTTCCCACCCCCG-GTGATGCTTCGATTTGTTTGCTTTT
--------------GCCTGCCCGCGCGTCAGGTGTTCGACGCAATGCCTCGGAAGGGTTGGCGCCCTCCTTTTTAATAGA
AATGCTGTAGTGGTCTGTAGCAACTTGAATTAATGGGAATAAGTGAAGAATTTCCTGGGATCGTTCAATTTTACTACTGA
TTGTTTTATTGAAATGTAAGGCCTAATTCAAATCAGTTGATGTTGCGTGATGCTTTGAATGTTGAATATAGATATGCCTG
TAATACACGTTGGAAGGACTCTCTAAATGTGATTCCCACGACCGATGATACTGCAAGCTGTTGTAACTGTTGCAGCTATC
TTGATTTTGAGGCCCAGTTCGATAAAAGTTTAAGCAGATTTCATTTAGGTACTGTTCGTATGA--------TAGGTCTTT
TGGCTATACTTTATGCTATA-T--TTAGATTTGGGAAATGCAGCTATCAAGACATGCTTTACTATTTTCAAGAAGTTTGT
CTAGAATGCATTTTGCACTATATATGAAAAAATCTCTTATAAATTTTAGATTGA-TTTTAGCACCCTCGTTCCAATACAA
GAAGTTGTTACTCATTCCGGAGCAGTAATCTGTGATGTCTTGACTTAATAGGAATAAGTGAAG-ATTTCCTGTGATCGTT
CAATTTTACGACTACTGATTGTTTTGACATTTTACTGAAATGTAAGGTCTAAGTCTGTTGTAACTGTTGCAGCTGCCCTG
TTTTTGATGTCCAGTTCGATAAAAGT---TGCAGACTGGCTGTTATGGCTTTTGCCTATACTTCATGGCTTTATGCTATA
TTTTGATTTGGGAAATGCAGCCGTGCCTAACAAATTACAAGAAGTTCATCTAGAATGTGTTTTGCACTATATGTGAAAAT
TCCCTTGTAAATTTTTGTGTGAGATGTTTGAAGTAATGCCTAGAAAATTCCTTGGAACACTTGGTGGAGGTGTGGTTTCT
GATTCTAAATCTAACTTAG
>chr2B_1
GGTCACAGGTCGCATTATATTTCTATGGCGGGTGCTTCGTAGCACTTCACACTCAATGAGGTAACTATCATATCCACCAG
GTTCACTCAAGTTGAATACTTTGATGGCAACTAGGCTCCTGTCGGACTTGAACCTACCAACATAAACTGAACCAGTACAG
GTTGTGCTGATAGTATGGACCGAAGAAAACCAGTTGGTAGCTTTAAGAATGTCCTGGTATGACACTCTCTTCAGCTTCTT
ATCATCATGGCACGGGGCTGTATGCACTTCTCTTCTATTAGGAAACACCTTGGACACAAGATCCCATCGTGAAAACGAAA
ACAACCCTTTCTTCCAAAGAGTGAGCAGAAACCATAACAACACCATGGAACCAATACTAAGTGTTGGTAGTACAATTAGC
AGCGAGGTCGTCAGCAATGACAGATGGTGTTTTGATTTAGTCACTGAAGCTGAGATGCGAGGACAAACTGGTAATGCTGG
CCTAAAGGAATTTCTTATTTTTATCAACTTGGAGGAATTTAAACAGAGTCCCTTGTTGCCACCCAGAACTACTGCAGCAT
ATTTCTTAAAGATCCCACTAGTAGGAACAGACCCTTCCAAGTTATTGTAAGACAGATCAAGTTGCTTCAGCATATCAAAT
CGCTCAAAGAATTCAGGCACGGCACCAGATAAGTCATTATGAGAAAGATTAATATGTTGGGTTGATACTAGTAGAT----
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>chr2B_1
GGTCACAGGTCGCATTATATTTCTATGGCGGGTGCTTCGTAGCACTTCACACTCAATAAGGTAACTATTGTATCCACCAG
GTTCATTCAAGTTGAATACTTTGATGGCAACTAGGCTCTTGTCGGACTTGAACCTACCAACATAAACTGAACCAGTACAA
GTTGAGCTGATAGTATGGACCAAAGAAAACCAGTTGGTAGCTTTAAGAATGTCCTCGTATGACACTCTCTTGAGCTTCTT
CTCGTCATGGCATGGGACTGTAGGCACTTCTCTTCTATTAGGAAACAACTTGGACACAAGATCCCATCGTGAAGACGAAA
ACAACCCTTTCTTCCAAAGAGTGAGCAGAAACCATAACAACACCAGGGAACCAATACTGAGTGTTGGTAGTACAATTAGC
AGCGAGGTCGCCAGGAATGACAGGTGGTGTTTTGATTTAGTCACTAAAGCTGAGATGCGAGGACAAACTGGTAATGCTGG
CCTGAAGGAATTTCTTATTTTTATCAACTTGGAGGAATTTAAACAGAGTCCCTTGTTGCCACCCAGAACTACTGCAGCAT
ATTTCTTAAAGATCCCACTAGTAGGAACAGACCCTTCCAAGTTATTGTAAGACAGATCAAGTTGCTTCAGCATATCAAAT
CGCTCAAAGAATTCAGGCACGGCACCGGATAAGTCATTATGAGAAAGATTAATCTGCTGGGTTGATACTAGTAGAT----
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>chr2A_2
-GTCACAGGTCGCATTATATTCCTATGGCGGATGCTTCGCAGCACTTCACACTCAATAAGGTAACTATCATATCCACCAG
GTTCACTCAAGTTGAATACTTTGATGGCAACTAGGCTCCTGTCAGACTTGAACCTACCAACATAAACTGAACCAGTGCAG
GTTGAGCTGATAGTATGGACCGAAGAAAACCAGTTGGTAGCTTTAAGAATGTCCTGGTATGACACTCTCTTCAGCTTCTT
CTCATCATGGAACGGGGCTGTATGCACTTCTCTTCTATTAGGAAACATCTTGGACACAAGATCCCATCGCGAAAATGAAA
ACAGCCCTTTCTTCCAAAGAGTGAGCAGAAACCATAACAACACTAGGGAACCAATAGTAAATGGTGGTAGTACAATTAGC
AGTGAGATCGCCAGCAAGGACAGTTGGTGCTTTGTTTTAGTCGCTGATGCTGAGATGTGAGGACAAAGTGGTAATTCTCG
CCCA---------------------------GAGGAATTTGAACAGAGTCCCTTGTTGCCATCCAAAACTACTGCAGCAG
AATTCTCAAAGATCCCACTTGTAGGAACAGACCCTTCCAAGTTATTGTAAGACAGATCAAGTTGCTTCAGCATATGAAGT
TGCTCAAAGAATTCAGGCACGGCACCGGATAAGTCATTATCAGACAGATTAATCTGTTGGGTTGATACTAGTAGAT----
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>chr2A_712
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-----------------------------------------------------------------------TATATTGGG
GATTTTGTTTTGGACAAAATGTATTGGGGTTTTAGGCGCCGCTCATTTGCCGAACGTTTCCATTTAGCACATGGGCTATA
AGAAGGTCAATCTGCGGACGGCCCACTTAGCCGAACATTTCCACTTTATTTTGGTCGGCCTTCTTATAGCCCATCTGATA
GTATCAGCCATTTCTCGATAGATCTCCGAGCTGACCAGCCCAACT-CCCCCCACTCCGGCAGAAGGCA----ACAGAGGG
TTAGGGTTCCGGCCGCCGGAGCAAAT-----------CACACGGAGGAGCAGAGCCAGCAGTCGAGAGAGAAGCGAGATG
AGCGGGAGCGCGTTCAACGCCTTCAAGTCGCGCGTGCCGGTGGCGTGGAGCCCGAAGCTGTACATCACGCTTGTGCGCGG
GCTGCCCGGGACGCGCAAGCTCCACCGCCGCACCCTGGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACC
GCACCACGCCCTCCCTCCTTGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCGAGGAGATGTACAACGCG
CGGAAGCAGGCCGACGAGCAGCGCCGCGCGCTCAGGCCCCCGCTCGTCGTCTCGCACGCCCCGCCGCCCAAGCCGGCCGC
CGCCGCGCCGGAGGGCGCCGGGCAGTAGTCGCCTCCGGTTAGTTCCCACCCCCCGGTGATGCTTCGGTTTGTTTTGCTTT
CGCC-----TGCCCGCCTGCCCGCGCGTCAGGTGTTCGACGCAATGCCTTGGCAGGGTTGGCGTCCTCCTTTATAATAGA
AATGCTTTAGCGATCTTTGGCAACTTGAATTGATGGGAATAAGTGAAGAATTTCCTGTGATCGTTCAATTTTACTACTGA
TTGTTATATTGAAATGTAAGGCCCAAGTCATATCAGTTGATGTTGCGTGATGCTTTGAATGCTGAATATAGATATGCCTG
CAATACACGTTGGAAGGACTCTCTAAATGTGGTTCCCATGACCGATGATACTGCAAGCTGTTGTAACTGTTGCAGCTATC
TTGATTTTGAGGCCCAGTTTGATAAAAGTTTAAGCAGATTTCATTTATGCACTGTTGGTATGATGGGCAGGTAGGGCTTT
TGGCTATACTTTATGCTATACTATTTAGTTTTGGGAGATGCAGCCATCAAGACATGCTTTGCTATTTTCTATAAGTTTGT
CTAAAATACATTTTGCACTCTATGTGAAAA-TTTTCTTATAAATTTTAAATTGA-TTTTGGCACCCTCATTCGAATACAA
AATGATGT---------------AGTAATCTGTGATGTCTTGACTTAATGGGAATAAGTGAAGAATTTCCTGTGAACGTT
CAATTTTACGACTACTGATTGTTTTGACATTTTACTGAAATGTAAGGCCAAAGTCTGTTGTAACTGTTGCAGCTGTCTTG
TTTTTAATGTCCAGTTCAATAAAAGTTTATGCAGACTGGCTGTTAGGTCTTTTGCCTATACTTCATGGCTTTATGCTATA
TTTTGATTTGGGAAATCCAGCCATGCTTAACAAATTTCAAGAAGTTCATCTAGAATGTGTTTTGCACTATATGTGAAAAT
TCCCTAGTAAATTTT-----------------------------------------------------------------
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>chr2D_876
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------------TCTCGCTAGATCTCCGAGCTGACCAGCCCAACTGCCTCCCACTCCGGCAAAAGGGTACAGACAGAGGC
TTAGGGTTCCGGCCGCCGGAGTAAATCCCACCACACGCACACGGAGGAGCAGAGCCAGAGCCAGA---------GAGATG
AGCGGGAGCGCGTTCAACGCCTTCAAGTCGCGGGTGCCGGTGGCGTGGAGCCCGAAGCTGTACATCACGCTGGTGCGCGG
GCTCCCGGGGACGCGCAAGCTCCACCGCCGCACCCTGGAGGCCATGCGCCTCCGCCGCTGCCACCGCACCGTCGAGCACC
GCACCACGCCCTCCCTCCTCGGCATGCTCACCCAGGTCAAGCGCCTCGTCGTCGTCGAGACCGAGGAGATGTACAACGCG
CGGAAGCAGGCCGACGAGCAGCGCCGCGCGCTCAGGCCCCCGCTCGTCGTCTCGCACGCCCCGCCGCCCAAGCCGGCCGC
CGCCGCGCCGGAGGGCGCGAGCCAGTAGTCGCCTCCGGTTAGTTCCCACCCCCC-GTGGTGTTTCGGTTTGTTTTTCCTT
TCGCCTGCATGCCCGCCTGCACGCGCGTGAGGTGTTCGACGCAATGCCTCGGCAGGGTTGGCGCCCTCCTTTTTAATAGA
AATGCTGTAGTGATCTGTAGCATCTTGACTTGATGGGAATAAGTGAAGAATTTCCTGTGATTGTTCAATTTTACTACT--
----TTTATTGAAATGTAAGGCCTAAGTCAAATCAGTTGGCGTTGCATAATGTTTTGAATGCTGAACATATATATGCCTG
CAATACACGATGGAAGGACTCTCTAAATGTGGTTCCCGTGACTGATGATATGGCAAGCTGTTGTAACTGTTGCAGCTATC
TTGATTTTAAGGTTCAGTTTGGTACAAGCTTAAGCAGATTTCATTTAGCTACTGTTGGTATGATGGGCAGGTAGGGCTTT
TGACTATACTTTATGCTATA-TATTTAGTTTTGGGGCGTGCAGGCATCAGGATATGCTTTGCTATTTTCAAGAAGTTTGT
CTAGAATGCATTTTGCACTATATGTGAAAA-ATCTCTTATAAATTTTAGAGTGGTTTTTGGCACCCTCATTCCAGTACAA
A-TGATGT---------------AGTAATCTTTGATTTCTTGACTTAGTAGGAATAAGTGAAG------------TCGTT
CAATTTTACTACTACTGATTGTTTTGACATTTTACTGAAATGTAAGGCCTAAGTCTGTTCTAACTGTTGCAGCTGTCTTG
TTTTTAATGTCCAGTTTGATAAAAGTTTAAGCAGACTGGCTGTTAGGTCTTTTGCCTATACTTCATGGCTTTATGCTATA
TTTTGATTTGGGAAATGCAGCCATGCTTAACAAATTCCAAGAAGTTCATCTAGAATGTGTTTTGCACTATATTTGAAAAT
TCCCTTGTAAATTTTTGTGTGAGATGTTTGATGTAATGCCTAGAAAATTCCTTGGAACAATTGGTGGAGGTGTGGCTTCT
GATTCTAAATCTAACTTAG
>SNPs
-----------S--------------------------------------------------------------------
------S---------------------------------------S---------------------S--------S--
-----------S------------------S-------------------------------------------------
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-S------------S----------------S----S------------------S------S------S-------S-S
-----------------S------------------------------S---S---------------------------
-----------------------------------------------S-------------------------------S
S----------------------S---S----------------------------SS---SS-S---------------
--------------------S-----------------------------------------------------------
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----------------------S---------------------------------------------------------
-----------------------------S--------------------------------------------------
-----------------------------------------------------S------------S-------SSS---
----------------------------------------------------S---------------------------
------------S------------------S-------------------------S----------------------
--------------------------S----------------------------------S------------------
S------------------------------S------S-----------------------------------------
-------------------S------------------------------------S------------------S----
----------------------------S-------S-------S---------------S-------------------
-----------------------S------S----------------------------S--------S-----------
S-S-S---SSSSSSSSSSSSSSS---------------------------------------------------------
-----------------------------------------------S---------------------------S-S--
-----S---------------------------------------S-S--------------------------------
----------------------S---S---------S-------------------------------------------
-------------------------------S---------------------------S---------------S----
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>forward_798
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----------------------------------------------------------TCCACTTAGCAGATGGGCTG--
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>reverse_1719
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--------------------------------------CGACCGATGATACTGCAAGC----------------------
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