>input_sequence_82959
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-------------------------------------------------------ATGGC------GCTCTCTCGTCGCA
TGGCCGCCTCCACCCTCCTGCTGCTCGTCCTCCTCGTCGCCACAGGTACGCCCCAC-CGCCCAG----CCTCTCACTT--
TTCCCACCGAGC--GAGCTGTGGTTTGCTCTATGGATGATGTT----TTACT-------------TAC--------TGTG
G--------TTTCTTTGATGTGCATGCAGAGATGGGGGCGACGACGACCAAGGTGGCGGAGGCACGGGACTGCCTGTCGC
AGAGCTTCAAGTTCAAGGGCGCGTGCCTCAGCAGCAGCAACTGCGCCGGCGTGTGCCGCACCGAGAACTTCCCCGACGGC
GAGTGCCACAGGCAGCACTTGGAGCGCAAGTGCTTCTGCAAGAAGCCCTGCTAG--------------------------
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>chr1D_1_TraesCS1D01G052800
CTCATCGCCTAAGATCTTCCTATTCTTCTTTCCAACGTCATGCATGTTTTTTGTGCGGTTTATATAAGGTCTTTGATTCT
TCATCCTCTAGCACTTCTCTGTAAACCTTGTCTATTTCTTTGTTACTTCTTACCCAACGGACTACTATTCAAGAAATGAT
TGCCATCCT---AAAAAGAAAGATTGTCAAAATTAAAAACATGAAGCTGTGAGTTTAAATGGTAACCAGAAATTTGTGAC
ATGGTACATGCATGTTCGTTGGTTTCATGTAGCCGAATATTTCAGAGGTTTTGAAAACATTTTTATCATGGATTTTTGGT
GCACGGTGCACCGGTTGCACATGATACGCACTCGCCTCCGACCTGTTGGC-GCTCCACAGCCACCCACCAGTTTGAAAGG
GAATCCAGCTGTAG------GTCCTTGGCCTGCCTGACGAGCAGCATGTGATC----------------TTGATGACCAC
-CTTCATCGGTAAGGAAATCCAGCCCGTGAAATGGCCACTGGCCACTCCCTCAGAGACCCCATCCACCAGTTTCGACATG
GAAATGGAATGAAATAATGGACC----TG--GGTGGCAACGTGTAATGGGCCATTGCTCTGCACTAGT-----ACGACGA
GATCGGGGGGAGGTAGCAACTGGGTGGGTGGGCAGCAACTGAAGAATGCGGTGCGCAA----------------------
---------------------------------------------------------------------------CTGCG
TTTGTGAAGCCCACGCACACTTAACACCC---------------------------------------------------
-------------------------------------------------------------------------ACT----
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---------------------------------------AAATCCAGCCCGTGAAATGCCTACTCTCCACTCCACTGCTT
TTGGAATAGATTCTAAAAAAAACTA------------CTTTTGGAATCGAATGAATTTATTGGACCTGTA----------
----TGGCTGGGTGCAGAATGGCTGGCTGTCAGGATG----------------------------------AGCAATTAA
ATTGAGAAGAACACTAC---------GTCTGTTAAGCCCACTAATCTCACAG----------------------------
-------------------------------------CTCACTGGTGCCCATTCTC----CTCCATTCGCTTTGCTCGCT
AGACAACAGACAGTCCC----------CCGT----------------------AGCAGCAGCAGAGGA------------
-----TAGTAGCTCGGTCCAGTACGTC---TCGGGTGAAGCA---GAGCAGATCGATGGC------GCTCTCTCGTCGCA
TGGCCGCCTCCACCCTCCTGCTGCTCGTCCTCCTCGTCGCCACAGGTACGCCCCAC-CGCCCAG----CCTCTCACTT--
TTCCCACCGAGC--GAGCTGTGGTTTGCTCTATGGATGATGTT----TTACT-------------TAC--------TGTG
G--------TTTCTTTGATGTGCATGCAGAGATGGGGGCGACGACGACCAAGGTGGCGGAGGCACGGGACTGCCTGTCGC
AGAGCTTCAAGTTCAAGGGCGCGTGCCTCAGCAGCAGCAACTGCGCCGGCGTGTGCCGCACCGAGAACTTCCCCGACGGC
GAGTGCCACAGGCAGCACTTGGAGCGCAAGTGCTTCTGCAAGAAGCCCTGCTAGTCCGCCCGCT----CGCCCCTC---C
CCAGCCGGCCAGCGCCGAGACGTCCGATGCTAGATCATCCTAGCCGTGCGTCCAC-------------------------
----------------------------------------------------------GTTCGTCCGTGTGTCCCTCTTA
GTA--------GAACTA---------------------------------------------------------------
--------------TAATAAAGTAGAAAA-TCAATCGGAGTCTCGGTAGTTTATATGCCTGATTTGTGTGTCCGTGTGTC
CGTGTCTGTG----CCTGATTTGTG-----TG--------TGGTGAT------------GTTCTAAGTATGGTCGTTGTT
TCAGCATGGATGGACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTATGTGTAAGTATGATCGT
GTTCAAAGAGAAATGCTATTATT-------GTGACTACTATATTTTTATGCGATGAGACGTTTTTCGAAGCTGTGTGAAC
ATTTCATTTGTATG--------------------------------------------------------------CATG
AACTGATGAAGAACTATAAGTTGAGCATTACCTTGTCA------------------------------------------
---------TAAAGAA-CCAAGTTTTCCTTTTGCGCAAGAAAAT-----A--ACAAAGTAGAGCATTAACATAAACCCTA
CAACAAAGGAAAAAATGAGAGCATTAACATGAGTACGAATCTTCTTTTACTCATAAACTATCTTATGCGAAATTTTTATG
TGCATTGGGATTTTAATAAACC---TGGTTTACAAAGCCTATTTTTCTACTTTTACTAAATAA-TATTGAACACGAACAT
CGAAGG----AAAAACATGCATAGAGTACCATTTCCTTGGAAGAACAATCCGGCCCGCACAAGC--CTCTAGAGTCTAAC
CCTATG----GAGATATTTTGGTAAAGCGATTTGGATACTCCTACAAGTAATAAGGTTGTGTCCAGTCGTCGTTATGTGG
TCCATGGGTCTGATTGTAATTGTTATTACATTTACTATTCA---------------------------------------
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>chr1B_11
----------AAGATCTTCCTATTCTTCTTTCCAACGTCATGCATGTTTTTTGTGCGGTTTATATAAGCTCTTTGATTCT
TCATCCTCTAGCACTTCTCTGTAAACCTTGTCTATGTCTTTGTTACTTCTTACCCAACGGAATACTATTCAAGAAATGAT
TGCCATTCTCAAAAAAAAAATGTTTGTCAAAATTTAAAACATGAAGCTGTGAGTTTAAATGGTAACCAGAAATTTGTGAC
ATGATACATGCATGTTCGTTGTTTTCATGTAGCCGAATATTTAAGAGTTTCTGAAAACATTTTTATCATGGATTTTTGGT
GCACGGTGCACCGGTTGCACATGATACGCACTCGCCTCCGACCTGTTGGC-GCTCCACAGCCACCCACCACTTTGAAAGG
GAATCCAGCTGTTG------GTCCTTGGCCTGCCTGGCGAGCAGCACTTTTTTTTTTTGAGAACATTTTTTGATGACCAC
-CTTCATCGGTAAGGAAATCCAACCCGTGAAATGGCCAC-----------------TCCCCATCCACCAGTTTCGACATG
GAAATGGAATGAAATAACGGACCTGGGTG--GGTGGCAACGTGTAATGGGCCCCTGCTCTGCATTAGT-----ACGA---
GACC-AGGGGAGGTGTCAACTGGGTGGTGGA-----------------------GCAA----------------------
---------------------------------------------------------------------------CTGCG
TTTGTGAAGCGCACG---ACGTAAAGATAGGGTGTGTGTGCGCGCGTGTATATGAGCGCT--------------------
-----------------------------------------------------TGCGTCAACACTGTGTTTAAAAA----
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---------------------------------------AAATCCAGCCCGTGGAATGCCCG------------------
----------------------CTA------------CTTTTGGAATCGAATGAATTTATTGGACCTGTA----------
----TGGCTGGGTGCAGTA-----GGCTGTATGGGTG----------------------------------AGCAATTAA
ATTCAGAAGAACACTAC---------GTCTGTTAAGCCCACAAATTAAACACC--CACTAATCTGCCATCTGCCTATATA
AACCCCACAGCCAGCTATGGGCCAGCACACTCTGCTTCTCACTGATGCCCATTCTC----CTCCATTCGCTTTGCTAGCC
AGCTAACACAGTCCCCCATAGGCCCGTACGT----------------------AGCAGCTG--CAGGA------------
-----TAGCTA---GGTCCAGTACGTCGTCTCGGGTGAGCTA---GAGCAGATCGATGGC------ACTCTCTCGTCGCA
TGGCCGCGTCCGCCCTCCTCCTGCTGGTCCTCCTCGTCGCCACAGGTACGCCCCGC-CGTCCAG----CCTCTCACTC--
TTCCCACCGAGC--GAGCTGTGGTTTGCTCCATGGATGACGTT----TTACT-------------TGC--------TGTG
G--------TTTCTTTGATGTGCATGCAGAGATGGGGGCGACGACGACCAAGGTGGCGGAGGCGCGGGACTGCCTGTCGC
AGAGCTTCAAGTTCAAGGGCGCGTGCCTCAGCAGCAGCAACTGCGCCGCCGTCTGCCACACCGAGAACTTCCCCGACGGC
GAGTGCCACAGGCAGCACTTGGAGCTCAAGTGCTTCTGCAAGAGGCCCTGCTAGTCCGCCCCCT----CGCC----CAGC
CCTGCCGGCCAGCGCCGAGACGTCCGATGCGATAATCCGAGCG-CGTGCGTCCACGTTCGTCAGTAGTAGTACTCTCTTC
GTATTTCTGT---------------------TCCGTGACGTTAGCTAGT-TCTGTTCTGTTCGTCCGTGTGTCCCTCTTA
GTATAGAAATAGAACTA---------------------------------------------------------------
--------------TAATAAAGTGGAAAA-CCAATCCGAGT----------TAGTTTGTTGAACG--------------C
C-TGATTGTG----CCTGATTTGTG-----TG--------TGGTGAT------------GTAATAAATATGCTGGTCATT
TCAGCATGGATGGACATGTGCAATGCATCCCCCGTCTCTCTT--------------------------------------
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-----------------------------------------------------------TCTATGTGTAAATATGATCGT
GTTCAAAGAGAAATGCTATTATT-------GTGACTACTATATTTTTAC------AGACGTTTTTTGAAGCTTTGTGAAC
ATTTCATTTTC--------------------------------------------------------------ATACATG
AACCAATGAAGAACTATAAGTTGAGCATTACCTTGTCA------------------------------------------
---------CAAAGAAACCAAGTTTTCTTTTTGCGCAAAAAAAAACAAAA--ACAAAGTAGAGCAT--------------
------------AAAAGAGAGCATTAACAAGAGTACGGATCTTGTTTTACTCATAAACTATCTTGTGCGAAAT-TTTATG
TGCATTGGGATTTTACTAAACC---TGGTCTACAAAGCTTA-TTTCCTACTTTTAATAAATA------------------
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>chr1A_301
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---------------------------------------------------------------TATCATGGATTTTTTGT
GCACGGTGCACCGGTTGCACAGGATACGCACTCGCCTCTGACCTGTTGGCCGCTCCACAGCCACCCACCAGTTCCAAAGG
GAATCCAGCTGTAGGTCCTCGTCCTCGGCCTGCCCGACGAGCAGCATGTGATC----------------TTGATGACCAT
TCATCCGT-----GGAAATCCAGCCCGTGAAATGGCCACT-------CCCTCAGAGTCCCCATCCACCAGTTTCGACATG
GAAATGGAACGAAATAATGGACCTGGGTG--GGTGGCAACGTGTAATGAGCCACTGCTCTGCTCTGCACTACCACGA---
GACC-GGGGGAGGTGTCAACTGGGTGGGAGGGCAGCAACT---GAATGCGGTGCGCAA----------------------
---------------------------------------------------------------------------ATGCG
TTTGTGAAGCCCACG---ACTAAACACCC---------------------------------------------------
-------------------------------------------------------------------------AAT----
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---------------------------------------AATTCCAGCCCGTGAAATTCCTA------------------
----------------------CTCTCCACTCCACTGCTTTTGGAATCGAATGAATTTATTGGACCTGCA----------
----TGGCTGGGTGCAGTATGGCTGGCTGTATGGGTA----------------------------------AGCAAGTAA
ATTCAGAAGAACACTACTAGTAGTACGTTTGTTAAGCCCACGACTTAAACACC--GACAAATCTGCCGTCCGCCTATATA
AACCCCACAGCCA---------CAGGCCACACTGCTTCTCACTGGTGCCCATTCTC----CTCCATTCGCTTTGCTAGCT
AGCTAACAGAGTCCCCC------------GT----------------------CGCAGCAGCAACATCAGGATAGCTTTG
CTAGCTAGCTC---GGTCCAGTACGTCGTCTCGGGTGAGCCA---GAGCAGATCGATGGC------GCTCTCTCGTCGCA
TGGCCGCGTCCGCCCTCCTCCTGCTGGTCCTCCTCGTCGCCACAGGTACGCCCGGC-CTCCCAG----CCTCTCACTC--
TTCCCACCAACC--GAGCTGTGGTTTGCTCCGTGGATGATGCT----TAGTTGCTTACTCCCTCCTAC--------CGTG
G--------TTTGGTTGATGTGCATGCAGAGATGGGGACGACGACGACCAAGGTGGCGGAGGCGCGGGACTGCCTGTCGC
AGAGCTTCAAGTTCAAGGGTGCGTGTCTCAGCAGCAGCAACTGCGCCGCCGTCTGCCGCACCGAGAAGTTCCCTGACGGC
GAGTGCCACAGGCAGCACTTGGAGCGCAAGTGCTTCTGCAAGAGGCCCTGCTAGTTCGCCCGCGCGCCGGCC----CCGC
CCTGCCGGCCAGCACCGAGACGTCCCATGCTAGCTC--------------------------------------------
--------------------------GATCATCCGTGCCGTTAGCTTATATTTGTTCCGTTCGCCACTGCGTCCACGTTC
GTCGCTACTTGTTCGTGTGTCCCGCTCGGCTCGGTAG-------------------------------------------
-----------AACTAATAAAGTAGAGAA-CCAATCGGGGTCTCGCTAGTTTAGTTCGCTGTGCG--------------T
CCTGTTCGTTGTCACCTGATTTGTG-----CG--------TGGCGATGTACTCCATTCAGTAATAAATATGGTCGTTGTT
TCAGCATGGATGGAC-----------------------------------------------------------------
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>chr1B_376
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-----------------------------------------------------------GCCACCCACCGGTTTTGATGT
-AATCCAGCTATAATCTGT-----TCGGCCTGCCTGACGAGCCGCATGTGACC----------------TTGATGACCAT
TCTTCATCGGTAAGGAAATCCAGCCCGTGAAATGGC-----------------GAGTCCCCATCCACCAGTTTCGACATG
GAAATGGAATGAAATAATGGACTTGGGTGCGGGTGGGAACGTGGAATATAATGGGTGCTGTGCTCCTGTGCAGGTGCTAG
GATC-AGGGGAGGCGGCAGCTGGAGGGGTGGCCAGCAATT---GAATGCGGAAGGCACCACGCGAGGTTCTATACAGTAT
ACGGATCGATGTTTGGGAAACGCTCTGATGTTTTCTGTGGATGTATGATTATCGGCACACACACTAATCTGCCGTCTGCC
TATATAAACCCCACACTCACTCGCGTCCATTCTCTACTCTCCATTCGCTTTGCTAAGTAGCAGCAGCAGGAGACCTCCTG
CTCTTCACTCCAGTATGTCTCGGGTAAGAGTATTTAACAAAAAACTACCACAATTCGTGAAAACCGTGCCTAAAAATTAC
CACTTTACAAATTTGTGTGAAAAACTATCACTTTTGTTCTAATCTTTGCCTAAAAACTACGAAGTCAGAAAAATGGCCAA
TTCAGATTGTTTAAGCGTGATCATAACATGCTGGGCCCACCCGTCAGTTCTTTGACCGTTAACATGTGGGGCCACACGCC
AGTACTTTGTTCTTCCTCTAAAATTCCCTATCTTCCTCTAAAATTCCCCATGGAGATCTCTGGTGGCTTTCAATGGCAGA
TGAATTGAGCTAGCTAGCTAGCTCTAATAGTCCAATCGACTTTTGCTTTGGATGAATCGAGCTAGCTAGCTCCAATTTCC
TCGATGTAAAATCGTGGCCGAACATGCAGCCGGGCGGGAAGGGCGGAAGGACCAGCCGCAGAACTCCCGGCCTTGGCCAT
GGTGCGGTTGTCGCAGATGACCACGGACCCGTCCACCGCCACGACCCAAGACAGCTCAGCCGGAGGCGCGAATGCCAACT
TCGTGCGGCGGTAGCCATGGCCAGGTCGCGGAGGCCAGCGCGCAGCCATGGCCAGCTCGCCCGGAATGGAAGCTCGCGCG
GAGGCCAGCTTCGAGTGCGGCGGTCGCCGTCGAGCTCGCCCGGCGACGTGGAGTCCAGCCAGTGCGGCGGCTAGCTTGCT
CGGTAGTGCGGCGGCAGCTCGCCCACAGCCGGCCCGGCGACACTACGCATACAAAGTGTTTGTAGAAATGTCCCAGTGAA
CATGTGGATCCCATCTGTCAAAACGGTCAATCTAGCGGGGTTGACTATTATTATCATGTCAATGCTTACGTGTGGGCCAG
CCCTGTCATAATCACGCTTAAACGAGTGGAATCGGCCACTTTTCTGACTTGGTAGTTTTTAGACAAAGATTGAAACAAAA
ATGATAGTTTTCCGCATAAATTTGTAAAGTGGTAGTTTGTAGACACGGTTTCATGAATTGTGCTAGTTTTTGGCTAAATA
CTCCTCAGGTGAAAGAAGATCAGCAGGCCCGTGACGTGAGTGTTGCTTGCGACCTTGATGGACGCTCCATGGCCAGGCCA
CCCACCAGTTTTGATGTAATCCAGCTATAATCTGTTCGGCCTGCCTGACGAGCCGCATGTGACCTTGATGAACATTCATC
GGTAAGGCTAGTCATAGTGGACAGTAACTTAGACTAGTAACATATACTAGTCTAAGTTACTACCTTCATAGTGGGTAGTG
TCATAGGTGTGGTAACATAGTTACCTTCATTTATTACTTTGTAGACTCATTATGCATTGGAAAGCGTTATGTGATGGTAA
CATATTATGTTAGTACTCTATTTGCCTCTCTCCTCATTAACTACTTGCCACATCACCATTTTTGCTTATGTGGCATCTAT
GTTACTACCTATGTTACTCCCACTATGACCAGCCTAAGGAAATTCAGCCCGTGAAATGGCCATCTACCAGTTTCGACA--
----------------------------------------TGGACATGGAATGAAATAATTGACCTGGGATGAGGGTGAC
AATGTGGATGGGTGCAGCCGTGCAGGTGAAGTGCTGGCATCGGGGGAGGTGGCAACTGGAGGAGGGTGAGCAGCAATTGA
ATCCAGAAGGCACCACG---------CTTTGTTAACCCCACGACTTAAACACCCACACTAATCTGCCGTCTGCCTATATA
AACCCTACCAAGTCAGTCCAGG-----------------------------------CCACTCCATTCGCTTTGCTAGT-
-AGCTA-ACACATCCCC----------CCGAACGCG----TAGTAGTAGCAGCAGCAGCAG--CAGGG------------
-----TAGCTCCTCAGTCCAGTACGTC---TCGGGTGAGCAAGATCAGCAGATCGATGGCGCTCGAGCTCTGTCGTCGCA
TGACCGCGTCCGCCCTCCTCCTGCTCTTCCTCCTCGTCGCCACAGGTACGTCGCTC-TTCCCAG----CC----------
-----AGCCAGCCGT----GAACAGT-TTTTCTGCATGA---------CGCT-------------TAC--------TGTG
GTTTGGTACTTTGGTTGACGTGCATGCAGAGATGGGGACGACGACGGTCAAGGTGGCGGAGGCGCGGGACTGCCTGTCGC
AGAGCCACAACTTCAAAGGCGCGTGCCTCAGCAGCAGCAACTGCACCGCCGTCTGCCGCACGGAGAACTTCCCCGACGGC
GAGTGCCACGCGCCGCACTACCAGCGCAAGTGCTTCTGCAAGAGGCCCTGCTAGTCCGCCCACT----CGCCCGGTCC--
--TGCCG----------AGACGTCCCATGCATGCTACTG-----------------------------------------
------------------------TAGATCATCCGTGCCGTTAGCTCGT-TCTGTTCCGTTCGCCAGTGCGTCCACGTTC
GACGCTACTTGTTCGTGTGTCCCGCTC-----GGTAG-------------------------------------------
-----------AACTAATAAAGTAGAAAA-TCAATCGGGGTCTCTCGAGTTTAGTTGGCTGTACG--------------T
CGTGTTGGTTGGCACCTGATTTGTACTCCATGTGGTGAACTGGTGAT------------GTAATAAATATGGTCGTTGTT
TCAGCATGGATGGAC-----------------------------------------------------------------
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>chr1A_515
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-------------------------------------------------------------ATCCACCAGTTTCGACATG
GAAATGGAACGAAATAATGGACC----TG--GGTGGCAACGTGTAATGGGCCATTGCTCTCGTGC-----------ACGA
GATCGTGGGGAGGTGGCAACCGCGCTTG----------------------------------------------------
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---------------------------------------AAATCCAGCCCGTGAAACAACCACTAGCTC-----------
------------------------CCCAACTCCATCAGTTTGGGCATGGAATGAATTTAGTGGG------TGCGGGTGGC
AACGTGGATGG--------GTGCAGGTGAAGTGATGGAATCGAGAGAG--------------------------------
-------------------------------------------------CACCCACACTAATCTACCGTCTGCCTATATA
AACCCCACTCTTTGC---------------------TCTCACTCGTGTCCATTCTCTCCACTCCATTCGCTTTGCTACT-
-AGCTA-ACACAGCCAC----------CCGTACATAGCACT---------AGCAGCAGCAG--CAGGG------------
-----CAGCTCCTCAGTCCAGTAC----------GTGAGCAAGATCAGCAGATCGATGGC------GCTCTCTCGTCGCA
AGACCGCGTCCGCCCTCCTCCTGCTCTTCCTCCTCGTCGCCACGGGTACATGCCGC-CTCCCAT----CCTCACTCTTAA
TTCCCAGCGAGA--T----GTGATCTGTTTCCTGGATGA---------CCCT-------------TAGTTGCTTAATGTG
G--------TTTGGTTGATGTGCATGCAGAGATGGGGACGACGACGACCAAGCTGGCGGAGGCGCGGGACTGCCTGTCGC
AGAGCCACAAGTTCAAGGGCGCCTGCCTCAGCAGCAGCAACTGCGCCGCCGTCTGCCGCACCGAGAACTTCCCCGAGGGC
GATTGCCACACGCCGCACTTCGCGCGCAAGTGCTTCTGCAAGAGGCCCTGCTAGGCCGCACGCT----GGCC----CCGC
CCTGCCGGCCAGCGCCGAGACGTCCGATGCTACATCATCCGTGCCGTTAGCTAATAATTAGCT-----------------
----------------------------------------------TATATCTGTTCTGTTGGTCGGTGCGTCCAGGTTC
GTCAGTCAGTCGTACTAGTTCTTAACTAGATCATCCGTGCCGTAACTAGTTCTGTTCTGTTCATCGGTGCGTCCCTCTTA
ATCAGTAGGACAACTAATAAAGTAGAAAAATCAATCGGGGTCTCTGTAGTTTACTTCGCTGTACG--------------C
CGTGTTTATG----CCTGATTTGTG-----TG--------TGGTGAT------------GTAATAAATATGTTCGTTGTT
TCAGCATGGATGGACTTGTGCAATGCATCCCCCTTTCCCCCCTG------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TCTCTGTGTAAGTGTGATCGT
GTTCAAAGGCAAATGCTAGTATTATTGCTTGTGACTACTGCATTTTCATGTGACAAGACGTTTTTGGAAGCTGCATAAAG
ATTTCATTTGT--------------------------------------------------------------ATAC---
-----ATGAACAACTATAAGTTGAACGTAACCTTGTCAAAAATTTAACGCTAGATTGTAGGCCTTTTCTCTATTAAAAAA
TACCTTGTCAAAAGAAACCAAGTTTTCTTTTGA-GAAAGAAAAT-----A--ACATAGT---------------------
-----------------AGAGCATTAACATGAGTACAACTTTTCTTTTACTAAAAGAAACAG----------C-TTTATG
TGCACTGGGATTTAATTAAACCAGCTGGTCTACAAATCACATTTTTCTACCTTTAATAAAAAAATATTACACATGAAAAT
CAGAAGAAGAAAAAAGATGCATAGACCACCATTTCCTTGGAAGAACAATTCCGCAAAAGC---C--CTCCAGAGTCTAAC
CGTACA----GAGATATTTTGGTAAAGCGCTCTGGATACTCCTCCTAGTAATAAGGATGTGCCGTTGACTTAGCGTGGGG
TAGGAGGATGGATATAAATCCATCCAATCACACACTATAAGCAGAGACAATGTAAGATTGTAAGATGTTTCAAGAGTTGC
TTGAAAAAAATTCTTAAACAACGATACTTTTTTTAGGTGACTAAGTAAGCATTTATGCTACACAAATAAATACTGGTGCT
TTATAAAAAACAGGTTCATTTTTACAAGCACCTATATAAATACTTTGTGTTGCACATGGGCTAGCACACACCACAAGGCA
GGCATCATGATCTGCTCACAATTGGGACAAACCTTATGGGCCCTCATGAGTTACATGTGTCCCATATGCCGAAGTTTTTT
TCAGTGGTATACTTTTATATTTTATTTTTTAGACAAAATTTTATATTCTTTTAAGTTATTGTAGTCATGTGACCCACAAT
TTTTATTTAGCGCTCATTTTAGAACGACAGGGAGATCATCCTATTTTTGTGCCTTGTGCTACAAATAGAGCCTATAACAC
AATATTGACCGTCCCAATAACTCCCGTACCCTCCTCACTCGCGAAACTATCACAAAAACTATATCTCACTTACGGTGAGT
TATTGCAAGTGCTCTCTCAGAGAGCTCTTGATTTGGGTCAGCCCGCCTAGGAACCGAGGGTGGGGACGGTATTTGCTTAA
AGCCTTTTCGCGCGGGTTCTTTTCATGTGGTTTTATTTGGGAATCGGCTTCTCATCCATTTTAGTGTTTTTCTTGAGGTC
TTGCCTTTTTTCTCCTTTTTAGAACTTTTTTCCTGTTTATTTGTTATTTATTTTCTGTTCCTTTTTTCTCTTTCCTTTCC
TTTCTCTCTTTATTCCCGGTTCTAATTTTTTTGTTCATCATCTATTAAAAACAAGTACATCGTCTATTTAAGAAAAAAAA
TGCATATCTGAACATGCTATCGTGTATTTAAAACAATTCCAATGTGTATTAAAAATGGTAACCATGTATGTATTAAAATG
TATAGAGTGTACTTTAAAAATGTTCCAGTATATTAAAATATGTTCATCGTGTAGCCCATCTTGCTTCAAAAATGAATGCT
CATATTTAAAAAAACATCAATGAATATTTTAAAAGGGTTCGGTGTATTATTTAAAAAATCACCATGTACTAAAAATCCTA
GGTCAGATTTGTAGCTAAGTCCAAGATCATTTGGTTACTTATGATAACCGTAGCTGACGGGCTGGATCATATCATACGCG
GATTCACGCACCCTCCCATGCATCTGCTTCTGACATGTGCACGTATGAATCTGCTTCTCATCGCATGGAGTGACTAGGCG
TACAGTAGGCTCGGTTTGCGTACAGCCTTGATGGCCGCTCCACAGCCACGCATCGGGTGAAGCTGAGCAGCATGTGACCT
CGACGATCCCCGGCTCGCTAGAATCCAACGACGGGCCATTCATCGGTAAGGAAATCGAGCCCGTGAAATGACCACTCCCT
CAGTCCTACTTACTACTACGCTACTTTCGGAATCGAATGAAGTTATTGGACGTGGGGGGTGGCAACGTGGAATGGCCCCG
CCCTGCCCTGCTACTGTGCATATGCATGTGCAGTGTGGGTGAGCAGCAATTGCATGCTCTGCTCCTGTAGGCTGTACTGG
ATCTAGGTTAGCAGCAATTATATCCAAAAGGACACTACGCTTTGTTAAGCCCACGGCTTAAACACCCATTAATCTGCCGT
CTGCCTATATAAACCCCACCAGCCCAGCCCACTCTTCGCTTCTCAGTTCTCACTCACCGCTGTCCATTCTTCTCCATTCG
CTTTGCTAACACAGTCCCCAGTAGCAGCAGCAGCAGGACAGCTCAGTCTCGGGTGAAGCTGAGCAGATCGATGGCGCTCT
CTCGTCGCATGGCTGCGTCCGCCCTCCTGCTGCTGGTCCTCCTCGTCGCCACAGGTACGCCCCGCCTCTCACTCATCCCA
CCCAGCGAGCTGTGGTTTGCTCTTTTACTTATCGTGGTTTCGTTGATGTGCATGCAGAGATGGGGGCGACGACGGTCAAG
CTGGCTGAGGCGCGGGACTGCCTGTCCCAGAGCCACAAGTTCAAGGGCGCCTGCCTCAGCAGCAGCAACTGCGCCGCCGT
CTGCCGCACCGAGAACTTCCCCGACGGGGAGTGCCACACGCACAACTTCGCCCGCAAGTGCTTCTGCAAGAGGGCCTGCT
AGCCCGCCTGCTCGATCGCCCCGGCCGCCCTGCCGGCCAGCGCCGCCACGTCCGATGCTAG
>chr1D_882
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-------------------------------------CTCACCGGTGTTCATTCTC----CTCCACTCGCTTTCCTATCT
AACCTA-ACACAGGCCC----------CCGT----------------------TGCAGCAG--CAGAG------------
-----CAGATC---GATCCAGTACGTC---TCGGGTGAACCAGCTGAGCAGATCGATGGC------GCCCACTCGTCGCA
TGGCCGCATCCGCCCTCCTGCTGCTGCTCCTCCTCGTCGCCACAGGTACGTTCCCC-CGCACAG----C--TTCACTC--
TTCCCAGCGAGC--CAGCTCTGGTCTGCTCCATGGACGATGCTTAAGTTGCT-------------TAC--------CGTG
G--------TTCCGTTGACGTGCATGCAGAGATGGGGACGACGAGGACCAAGACGGCGGAGGCGCGGGACTGCCTGTCGC
AGAGCCACAAGTTCAAGGGCGCCTGCCTCAGCAGCAGCAACTGCGCCGGCGTCTGCCGCACCGAGAACTTCCCCGACGGC
GAGTGCCACACGCACAACTTCGCCCGCAAGTGCTTCTGCAAGAGGGCCTGCTAGCCGGCCTGCT----CGCCCCGGCCGC
CCTGCCGGCCAGCGCCGAGACGTCCGAT----------------------------------------------------
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>chr1B_882
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-------------------------------------CTCACTCGTGTCCAGTCTCTCCACTCCATTCGCTTTGCTACT-
-AGCTA-ACACAGCCCC----------CCGAACGCG----T---------AGCAGCAGCAG--GAGGG------------
-----TAGCTCCTCAGTCCAGTACGTC---TCAGGTGAGCAAGATCAGCAGATCGGTGGC------GCTCTCTCGTCGCA
TGACCGCGTCCGCCCTCCTCCTGCTCTTCCTCCTCGTCGCCACAGGTACGTCGCTCACGCCGAA----C--CTCACTC--
TTCTAAGCGAGCCGT----GTGATCTATTTCCTGGATGA---------CGCT-------------TAC--------CATG
G--------TCTCGTTGATGTGCATGCAGAGATGGGGGCGACGATGACCAAGGTGGCGGAGGCGCGGGACTGCCTGTCGC
AGAGCCACAACTTCAAGGGCGCGTGCCTCAGCAGCAGCAACTGCGCCGCCGTCTGCCACACGGAGAACTTCCCAGACGGC
GAGTGCCACACGCCGCACTTCGCGCGCAAGTGCTTCTGCAAGAGGCCCTGCTAGACCGCCTGCT----GGCCCCGCCC--
--TGCCGGCCAGCGCCGAGACCTCTGATGCTAGATCATCCGTGCCGTG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------
>chr1B_882
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------CTCACTCGTGTCCAGTCTCTCCACTCCATTCGCTTCGCTACT-
-AGCTA-ACACAGCCCC----------CCGAACGCG----T---------AGCAGCAGCAG--CAGGG------------
-----TAGCTCCTCAGTCCAGTACGTC---TTAGGTGAGCAAGATCAGCAGATCGGTGGC------GCTCTCTCGTCGCA
TGACCGCGTCCGCCCTCCTCCTGCTCTTCCTCCTCGTCGCCACAGGTACGTCGCTCACGCCGAA----C--CTCACTC--
TTCTAAGCGAGCCGT----GTGATCTATTTCCTGGATGA---------CGCT-------------TAC--------CATG
G--------TCTCGTTGATGTGCATACAGAGATGGGGGCGACGACGACCAAGGTGGCGGAGGCGCGGGACTGCCTGTCGC
AGAGCCACAACTTCAAGGGCGCGTGCCTCAGCAGCAGCAACTGCACCGCCGTCTGCCATACGGAGAACTTCCCAGACAGC
GAGTGCCACACGCCGCACTTCGCGCGCAAGTGCTTCTGCAAGAGGCCCTGCTAGACCGCCTGCT----GGCCCCGCCC--
--TGCCGGCCAGCGCCGAGACCTCTGATGCTAGATCATCCGTGCCGTG--------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------
>chr1A_903
--------------------------------------------------------------------------------
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--------------------------------------------------------------CCATTCGTTTTGCTAGCT
AGACAACACACAGTTCC----------ACGT----------------------AGCAGCAG--TAGGA------------
-----TAGCTC---GGTCCAGTACGTCGTCTCGGGTGAGCCA---GAGCAGACCGATGGC------GCTCTCTCGTCGCA
GGGCCCCTTCCGCCCTCCTCCTGCTGGTCCTCCTTGTGGCCACAGATACGTCGCGC-TGCCGAG----CTCTACTGTA--
---------------------GGTTTGTTCCCTCGATGATGATGCTC-TGCT-------------GAC--------CGTG
G--------TTTGGTTGATGTGCATGCAGAGATGGGGGCGACGACGACCAAGGTGGCGGAGGCGCGGGACTGCGTGTCGC
AGAGCCACAACTTCAAGGGCGCCTGCCTCAGCAGCAGCAACTGCGCCGCCGTCTGCCGCACCGAGAACTTCCCC--CGGC
GAGTGCCACACGCCGCACTTCGAGCGCAAGTGCTTCTGCGAGAGGCTCTGCTAGTCCGCCCGCT----CGCCCCGTCC--
--TGCCG----------AGACGTCCCATGCATGCTACTG-----------------------------------------
------------------------TAGGTCATCCGTGCCGTTAGCTCGT-TCTGTTCCGTTCGCCAGTGCGTCCACGTTC
GACCCTACTTGTTCGTGTGTCCCGCTA-----GGTAA-------------------------------------------
-----------AACTAATAAAGTGGAAAA-TCAATCGGGGTCTCG--AGTTTAGTTGGCTGTACG--------------T
GGTGTTGGTTGGCACCTGATTTGTG-----TGTGGTGAACTGGTGAT------------GTAATAAATATGGTCGTTGTT
TCAGCATGGATGGAC-----------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------
>chr1A_939
--------------------------------------------------------------------------------
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----------------------------CGT----------------------AGCAGCAG--CAGGG------------
-----TAGCTCCTCAGTCCAATACGTCGTCTCGAGTGAAGAAGATCAGCAGCTCGATGGC------GCTCTCTCGTCGCA
GCGCCGCATCCGCCCTCCTGCTTCTCGTGCTCCTCGTGGCCACAGGTAAATGCCGC-CTCCCATGCATC--CTCACTC--
TTCCCAGCGAGC--C----GTGATCTGTTTCCTGGATGA---------TGCT-------------TAC--------CGTG
G--------TCTCGTCGATGTGCATGCAGAGATGGGGACGACGACGACCAAGCTGGCGGAGGCGCGGGACTGCCTGTCGC
AGAGTCACAACTTCAAGGGCGCCTGCCTCAGCAGCAGCAACTGCGCCGGCGTCTGCCACACCGAGAGCTTCCCCGGCGGC
GAGTGCCACACGCAGCACTTCGAGCGCAAGTGCTTCTGCAAGAGGGTCTGCTAGCCCGCCTGCT----CGCCCCGGCCGC
CCTGCCGGCCAGCGCCGAGACGTCCGAT-------CATCCGTGCCGTGCCTCCACGTTCGTCAGTAGTA-----------
GTATTTCTGTTCCGTGACGTTAGATAGTTCATCCGTGCCGTTAGCTACT-TTTGTTCTGTTCGTCCGTGTGTCCCTCTTA
GTATAGAA-TAGAACTA---------------------------------------------------------------
--------------TAATAAAGTAGAAAA-CCAATCGGGGTCTCGGTTGTTTAGTTCGCTGTACG--------------C
C-TGTTTGTG----CCTGATTTGTG-----TG--------TGGTGAT------------GTACTAAATATGGTCGTTATT
TCAGCATGCATGGACATGTGCAATGCATCCCC---CTCTCTC--------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TCTATGTGTAAATATGATCGT
GTTCAAAGAGAAATGCTATTATT-------GTGACTACTA----------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------
>chr1D_1792
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-----------------------------------------------------------TCTCTGTGTAAATATGATCAT
GTTCAAAGAGAAATGCTATTATT-------GTGACTACTATATTTTTATGCAACGAGACGTTTTTCAAAGCTGCATGAAC
ATTTAATTTTTATACGTGAACTTATGAAGAACTATTATTTGAGCATTACCTTTTCAAAAACAAACCAATTTATATACATG
AACTGATGAAGAACTATTAGTTGAGCATTACCTTGTCA------------------------------------------
---------AAAAGAAACCAAGGTTTCTTTTTGCGCAAAAAAAT-----ATAACAAAGTAGAGCATTAACATAACCCCCG
CAACAAAGAAACAAATAC-AGCATTAACATGAGTACGAATCTTCTTTTACTTATGAACTATCTTGTGCGAAAC-TTTATG
TGCATTGGGATTTTACTAAACC---TGGTCTACAAAGCTTA-TTTCCTACTTTTAATAAATAA-TATTGAACACGAACAT
CGAT----GAAAAAACATGCATTGACCACCATTTCCTTGGAAGAACAATCCGGGCTGCGGAAGCCTCTCCAAAGTCTAAC
CGTACATACGGAGATATTT-------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>SNPs
SSSSSSSSSS----------------------------------------------------------S-----------
-----------------------------------S-------------------------S------------------
------S----------S--S-S-----------S---------------------------------------------
---S-----------------S--------------------S----S--S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------SSSSSSS---------S-----------------------
--------------------------------------------------------------------------------
--------------S-------------------------SSS-------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------SS---S-SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS----------------------------------------------------------
-----------------S------------SS--S---------------------------------------------
---S-------------------------------------S---SSS---S----------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
--------SSS---------------------------------------------------------------------
-------S---S------------------------------------------S-------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
----------------------------------------------------S---------------------------
-------------------------------------------S------------------------------S-----
--S-------------------------------------SS--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------SS--S----SSSSSSSSSSSSSSSSS-
-----S-------------------------------------------------------S----S-------------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
-----------------------------------------------------S--------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S-----------------S----------------------------------------------S---SS
--------S--S----------------------------------------------------S--------S------
---------------S-------------S--------S----------------S------------------------
----S--------------------SS----------------------------S--S----------S----------
-S--SS-----------------------S-S-----------S-S----------S----S-SSSSSS-SSSSS--S--
-SSSS--S-SSSSS-SS-SSSS-SSSSS--SSS-----SSS---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>forward_2385
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------AGCCCGTGAAATGCCTACTC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------
>reverse_4456
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CGCACAAGCCTCTAGAGTCT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
