>input_sequence_82944
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---------------------------------------ATGTCCTTCCTGAGACTGTTACCTCAAAGGTTGCCCCAGTT
TGCTAGGTACTTGCATCC--CACCTTTAAAATTTGAGCAAGTTTGTGCTATATCGTAAATATCCCAG--ATTATCGTGGA
ATGG-GTATCTGTTTTAATTTGATTTCTATATGATCATG-ACAGGCAGGTGGAGCGAGATGTTGAGACTGTAATCAATGT
TCTGCAGCCAGGTCCAATAGGAATTGTGGAGCACAAATTCACCGATGCAGAGATCCGCGAGGCGCAAGGCACAGTAAGGA
GCGCAGTCCAGAATTGGCGAAGGAACTGGAATTTGGAGAGAAATCTTGCCACTGGTTCTATTGGTAAATCGAAGTAA---
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>chr5D_1_TraesCS5D01G147000
TGTGTCGGGAGAAGTGGAAAATGACGGCTAGACGGTGGAGGT-------GAGCGGCGATCAGGGGGCGGAGATGCGGTGA
GCCGCGCGGCGTGGAATTTGGGATGGTGAAGACCTAGTTTTTC-CCCCT--CTCTCCAGACCATAAGACCTAGTTTGCGT
GGATCGCTTT----------------------------ACGATGGAACC----------------TCTTCTGCAATATCG
ATC-----TCACAGTTGACTCCAATCTTTCTGGCACATCATAGGATGGCAGGAATGCCCTCCGATTTCCATGTATTTCGT
GGTAATTCCCATGGATAGTGCCACCATGGA----------------GTAGTTTATATTTAAAGAAAATT-GGGGCTTCAG
CCGAACCCACATCTACAAGCCACTCGAGCCATTCCTCCATTGTTCATATGAGCTGGCACCACGGGAATTTGTTTTTTGTT
CCCGGGACCATGTCAGATGTGGATGCATCTATTTCCTAATTGCAGGCATTTCAGATGTTAGGGTACTGTTGTGCTAGGCT
GCTAAGGTACCAGCTGTGTTTATCATGTTAAAGAAGAACATGGAAGGTGGCCTGACAGCACACTTTTAAGTTCAGTTACT
ACTATGATCCATTCACAATTATCTTTCATATAGTATGGCTGTTCGATTGATGACAACTTATTTTGTTCC--ATAAGTTTT
TATTAGAATCGGATCGAACGCCTACTGCAACTTGCAAACAAACCTTGTAGTTGGCATGCCCAAGGACAAACCCAT-ATGG
ATTCAGATAAGAAAAAAATCTAGCTCTTGACAATGTACTCTCATCAGCTCCAATGTGTTTTCCTTGCATCGCACCAGGCT
AAAACTAGTTTAAGTCAATTCTGAGGATTCACTCTACCGTTGTGAATAGCAACTGTACCAGGACAGGTCACTACATGGAT
AGTTTCGTATGTCTCATCGGCATGCTACTCTGAGTCATGTAATCTTTCTTCTTCTTGTGAACTGTAGCCTTTTTTAGTGG
CAGGAAACAATCTGAATCAAGGCAAGGATTTTTGTGGTGATGTCCTTCCTGAGACTGTTACCTCAAAGGTTGCCCCAGTT
TGCTAGGTACTTGCATCC--CACCTTTAAAATTTGAGCAAGTTTGTGCTATATCGTAAATATCCCAG--ATTATCGTGGA
ATGG-GTATCTGTTTTAATTTGATTTCTATATGATCATG-ACAGGCAGGTGGAGCGAGATGTTGAGACTGTAATCAATGT
TCTGCAGCCAGGTCCAATAGGAATTGTGGAGCACAAATTCACCGATGCAGAGATCCGCGAGGCGCAAGGCACAGTAAGGA
GCGCAGTCCAGAATTGGCGAAGGAACTGGAATTTGGAGAGAAATCTTGCCACTGGTTCTATTGGTAAATCGAAGTAACTC
TCTGC-ATCATGACTTGGTGCA--GCACCAACACTGAAAATGAAAGTGTGTCG-------------TAGTTGCAACTGTT
GGCCTTGGTGTAGTTGGTATGTTTTCTCTGTCAGTGGACCCATGCAATTGATGGTGAAATC---CTTCCATGATCTA-TT
ATCAGTGAAAGT--ACACGCTG-TTTGAGTTTCCTAAATTGTTCCTCTAACATCTGAAATTCTCAGTAATATCCCCTCAA
TCCACATGTGATTTGCAGCAGTTTGTGGATTCGATGTGCACAAATTGAGTTGCCTCGAGTGGGATGTATGGTTTAGCCTG
GAAAGGA--------------------TGTAAAAGAAGGCGGTCAAGTGTTTCAGGGAGCAGTTTGCACCTGTTTATATC
ACAGTTGAATTCCGTTTTTTGAAAATGAGTAAGCTGTCTTGCCACTCGGATGTTGCAGTAAGAATCAGAGAGTGATTGAT
TGATTTCACGGGTGTGCTTTCGCCCTATGGTATTTTCCATTTCGTTCTAACTATTTTTCTAGACTATGCCCGAGTCAGCG
TATCATCGTCATGATCATCTATTAAGATAAGAAAAGCGAAGCAGCCATTACAAAATTCAAACATAAAAATTATTGGGAGT
GCATAGTTCAAAAGCTGGATGA-TTTCAGTGTGGATCCACATATGCTTCATAAGACCAATGAGTAGTTGCACGTTTAAGA
CCAATGAGTAGTTGCACGTTTAAGACCAATGAGTAGTTGCACGTGC----------------------------------
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-----------------------------------------------CTTTTATCGCGGGCAACAACTATCCTGCCCGAC
ACC-GAACCCTTGAAGTTAAGAACATGCTCCTTCTTTCTTATCCATTTCTTCAAGGATGCTCATCACCACCAACATGTCA
TCGTCTTCATCGTGATCGATGTACAGATCCAATAAATCAACGAACTCCTTCGGGGAAGCAAACTCATCATCCGGTGAATC
CATCGCTTGCCTACAAATGAGAAAAAGAATCTAAAAACAGCTCTAACATTTCCGTCATACACATGGCTGGTGAGGTGTAT
GTT
>chr5A_1
TGTGTCGGGAGAAGTGGAAAATGACGGCTAGATGCTGGAGGT-------CAGCGGCGATGAGGGGGCGGAGATGCGGTGA
GCCGCGCGGCGTGGGATTTGGGATGGTGAAGGCCTAGTTTTTTTCCCTT--CTCTCTAGACCATAAGACCCATCTTGCGT
GGATCGCTTT----------------------------ACAATGGAACCCCGACTAGAATATCCTTCTTCTGCAATATAT
CTCAGGCTTCTCAGCTGACCCCAATCTTTCTGGCTCATCATACGATGGCAGGAATGCCCTCCGATTCCCATGTATCTCGG
TGCAATTC---------------CCATGGA----------------GTAGTTTATATTTAAAGAAAATTTGGGGCTTCAG
CCGAACCCACATCCACATGCCCCTCAAGCCATTCCCCCATTGTTCGTTTGAGCTGGCACCACGGGATTTTGTTTTTTGTT
CCCGGGACTATGTCAGGTGTCGATGCATCTATTTCCTAATTGCAGGCATTTCAGATGTTAGGATAC---TGTGCTAGGCT
ACTAAGGTACTAGCTGTCTTTATCATGTTAAAGAAGAACATGGAAGGTGGCCTGACAGCACACTTTTAAGTTCAATTACT
ACTATGATCCATTCACAATTATCTTTCATATAGTATGGCTGTTCGATTGATGACAACTTATTTTGTTTG--ATAAGTTTG
TGTTAGAATCGGATCGAACACTTACTGCAACTTGCAAACAAACCTTGTAGTTGACATGTCCAAGGACAAACCCTTGATAG
ATTCAGATAAGAAAAATCTAGGGTGCGATGG--TGTACTCTCATCGGCTTCAATGTGTTTTCATTGCATCACGTTAGGCT
AAAACTA-------------------------------------------------------------------------
---------------------------------GTCATGTAATCTTTCTTCTTCCTGTGAACTGTGGCCATTTTTAGTGG
CAGGAAACAATCTGAATCAAGGCAAGGATTTTTGTCGTGATGTCCTTCCTGAGACTGTTACCTCAAAGGTTGCCCCAGTT
TGTTAGGTACTTGCATCC--CACCTTTAAAATTTGAGCAAGTTTGTGCTATATCGCAAATATCCCAG--ATTATCGTGGA
ATGTCATATCTGTTTTAATTTGATTTCTTGATGATCATGCACAGTCAGGTGGAGCGAGATGTTGAGACTGTAATCAATGT
TCTGCAGCCAGGTCCAACAGGAATCGTGGAGCATAAATTCACTGATGCAGAGATCCGCGAGGCGAAAGGCACAGTAAGGA
GCGCAGTCCAGAACTGGTGAAGGAACTGGAATTTGGAGAGAAATCTTGCCACTGGTTCTTTTGGTAAATCGAAGTAACTC
TCTGC-ATCATGACTTGGTGCA--GCACCAACACTGAAAATGAAAGTGTGTCG-------------TGGTTGCAATTGTT
GGCCTTGGTGTAGTTGGTATGTTTTCTCTGTCAGTGGACCCATGCAATTGATGGTGATATC---CTTCCATGATCTA-TT
ATCAGTGAAAGT--ACACGTTGTTTTGAGTTTCCTAAATTGTTCCTCTAACATCTGAGGTTCTTAGTAAAT---------
--------------------------------------------------------------------TGGTTTAGCCTG
GAAAGGAC------TGCTGAACATCTCTGTAAAAGAAGGCGGTCAAGTGGTTCAGGGAGCAGTTTGCACCTGTTTATATC
ACAGTTGAATTCCGTTTGTTGAAAATGAGTAAGCTGTCTTGCCACTCGGATGTTGTAGTCCGAACCAGAGAATAATTGAT
TGATTCACAT-GTGTGCTTTCGCCCTAGGGTATTTTCCATTTCGTTCCAACTATTTTTCTGGAATACGTCTGAGTCAGCT
TATCATCATCATTATCATCTATTAAGAGAGGAAAAACTAAGCGGCCATTACG---TTCAAACGTAAAAATATTC--GAGT
GCATAGTTCAAAAGTTGGATGATTTTCAGTGTGGATCCACATATGCTCCG------------------------------
--------------------TAAGACCAATGAGTAGTTGCACGTGCACATGGGTATCTCCATGTTGTCGATGCATCTCTA
GGAAGTTCACAACATGTGTTGCATTTTTCTCTGGGAGTCAGACATGTACTTCCGGGCTTCTCAAAATCATGGGTGCGGGC
AATCCATCGCCCTCATCCTTCATAATCATGTTATGCAAGATTACACAGGACATGTATTTCCGGGCTTCTCAAAATCATGT
GTGCGGGCAACCCATCGCCCTCATCCTTCATAATCATGTTATGCAAGATTACACAACATGTCATCACTTGCCACAATGTC
TCTGGATCCCACATCTTAGCACCTCCACGAACAATACCCAAACGAGCTTGCAGAACTCCAAATGCCCTGTATACATCATT
CCTAGCAGTTTGTTGCATTTGTGCAAGGAGCTTGCATTTGTTACCTTGGGGATCGGGTTTAGTCTTCACATACGCCTCAC
ACTGATGATAGATAGCATCAGCGCCATGGTGTAGTTGTGCCTGTGGACGGTGTACTCGCACGCCGGAGCATCGCCATCAC
AAAGTCTCTTGCACAACGGAGATCCCTGAAGCACACTGATGTCGTCGTCAGAACTTTGCATGACAAAGAAAAGGCAAATC
CACAAGTCATTTGATGTCATTGTTTTAAGTATGATGATGGCCTTTTTGGTGTGACCATTGCCTGCGCAAAAATGTGAGGC
AGTTCTTTCATTGCTAATGCACACAATGGATTGAACCGAGCATACTGGGAAACCTCTTACTCTCCAATTGCCAATAACTT
CTATATATCCTCAGCATTTGGGTCTCTCAAGCATTCCGGTCCAAACAGGCAAACACCTTCACCATGGTGTAGAAAAATTA
CACCATGGCCTCAATGTATGTGCCCTCTCCCCATCCGGACGACCTCACCAACGGCGTCTTCGGTTGTACCATATGCAAGC
ATCCTCGGAGTAGAGACATGTGTTTCTGCATGGGAGAGAACGATAGTTGTCCGCAACAATCCTTCCTCAGCGTGAAGTAA
GGATAATATGCTTTCACACCATTCACTATACACGAGAACAAATGACCACTCCATATGCGACGCCAAAAAGAATTCTCATG
GAATACCGAGTTGGGTTTGAACTAGTCGTCGTAGAGATTCCGCTGGCCTTTTATCGCGGGCAACAACTATCCTGCCCGAC
ATCTGAACCCTTGAAGTTAAGAACATGCTCCTTCTTTCTTATCCATTTCTTCAAGGATGCTCATCATCACCAACATGTCA
TCGTCTTCATCGTGATCGATGTACGAATCCAATAAATCAATGAACTCCTTTGGGGAAGCAAACTCATCGTCCGGTGAATC
CATCGCCTGCCTACAAATGAGAAAAAGAATCTAAAAACAGCTATAACATTT-CGTCATACACATGGCAGGTGAGGTGTAT
GTT
>chr5B_3
--TGTCGGGAGAAGTGGAAAATGACGGCCAGATGGTGGAGGTGAGCCGTGAGCGGCGATGAGGGGGCGGAGATGCGGTGA
GCCGCGCGGCGTGGGATTTGGGACGGTGAGGACCTAGTTTCTTTTTTCTTCCTCTCGAGACCATAAGACCTAGCTTGCGT
GGATCGCTTTGCTCTGATGATCTTTTGTTCTGGAGACGACAATGGAACCCCGACTAGATTATCCTTCTCTTGCCATATCG
ATC-----TCA--GTTGACCCCAATCTTTCTGGCTCATCATGCGATGGCAGGAATGCACTCCGATTTCCATGTATCTCGG
TGCAATTC---------------TCATGGACTGGTACCACCGTGTTGTAGTTTATATTTAAAGAAAATT-GGGGCCTCAG
CCGAACCCTCATCCACTTG-CCCTCAAGCCATTCCTCCATTGTTCATATGAGCTGGCACTACGGGATTTTTTTTTTTGTT
CCCAAGACTATGTCAGATGTGGATGCATCTATTTCCTAATTGCAGGCATTTCAGATGTTAGGATAC---TGTGCTAGGCT
GCTAAGGTACCAGCTGTCTTGATCATGTTAAAGAAGAACATGGAAGGTGGCCTGACAGCACACTTTTAAGTTCAGTTACT
ACTATGATCCATTCACAATTATCTTTCATATAGTATGGCTGTTCGTTTGATGACAACTTATTTTGTTCTATATAAGTTTG
TGTTCGAATCAAATCGAACACTTACCGCAACTTGCAAACAAACCTTGTAGTTGACATGCCCAAGGACAAACCCTTAATGG
ATTCGGATAAGAAAAATCTAGGGTACG-------------------------ATGTGTTTTCGTTGCATCACGCTAGGCT
AAAACTAGTTTAAGTCAATTCTGAGGATTCACTCTATCGTAGTGAATAGTAATTGTACCTGGACAGGTCACAT-ATGGAT
TGATTCGTATGTCTCATCAGCATGCTACTCTGTGTCATGTAATCTTTCTTCTT---GTGAACTATAGCCTTTTTTAGTGA
CAGGAAACAATCTGAATCAAGGCAAGGATTTTTGTCGTGATGTCCTTCCTGAGACTGTTACCTTAAAGGTTGCCCCAGTT
TATTAGGTACTTGCACATCGCACCTTTAAAATTCGAGCAAGCTTGTGCTATATCGTAAATATTCCAGC-ATTATCGTGCA
ATGG-ATATCTGTTTTAATTTGATTTCTTGATGATCGCGCACAGACAGGTGGAGCGAGATGTTGAGACTGTAATCAATGT
TCTGCAGCCAGGTCCAATAGGAATTGTGGAGCATAAATTCACCGATGCAGAGATCTGCGAGACACAAGGCGCAGTAAGGA
GCGCAGTTCAGAATTGGCGAAGGAACTGGAATTTGGAGAGAAATCTTGCCACTGGTTCTTTTGGTAAATCGAAGTAACTC
TCTGC-ATCATGTCTTGGTGCT--GCACCAACACTGAAAATGAAAGTGTGTCG-------------TGGT----------
---CTTGATGTAGTTGGTATGTTTTCTCTGTCAGTGGACCCATGCAATTGATGAGGATATC---CTTCCATGATCTATTT
ATCAGTGAAAGT--ACACGCTG-TCTGAGTTTCCTAAATTGTTCCTCTAACATCTGACGTTCTCAGTAATATCCCTACAA
TCCGTATGTGACTTGCAGCACTTTGTGGATCAAGTATTGACAAATTGAGTTGCCTCGAGTGGGATGTATGGTTTAGCCTG
GAAAGGAC------TGCTGAACATCTCTGTAAAAG-AGGCGTTCAAGTGTTTCAGGGAGCAGTTTGCACCTGTTTATATC
GCAGTTGAATTCCGTTTGTTGAAAATGAG---------------------------------------------------
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>chr1D_935
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-----------------------------------------------------CTTCTGAACTGTAGTCTTTTCTATT-A
CAGGAAACAATCTGAATCAAGGCACGGATCGG---CGTGATGTCTTTCCTGAGGCTGTTACCTCAAAGGTTGCCCCAATT
TGTTAGGTACTTGCACATCTCACCTTTAAAATTTGAGCAAGCCTGTGCTATATCATAAATATTTCCACTATTATGGTGGA
AAGG-ATATCTGCTTTAATTTGCTTTCTTGACTATGACACACAGGCAGGTGGAGCGAGATGTCGAGACTGTAATCAATGT
TCTGCAGCCAGGTCCAATAGGAATTGTGGAGCATAAGTTCACTGATGCAGAGATCCGCGAGGCGCAAGTCACTGTAAGGA
GTGCTGTTGAGAAATGGCGAAGGAACAGTGCTCTGGAGAGAAATCTTGGCACTGGTTCTTTTCATAAATCGAAGTAGCGC
TCTAT-GTCATGACTTGGTGCAGCGCACCAATACTGAAAATAAAAGTGTGCCATGGTTGCAACTGTTGGT----------
---CTTGGTGTAGTTAATGTGTTTTCTCTGTCAGTGAACCAATGCAATTGATCATGATATACCTCCTCGATGATCTA-TT
ATCGGCAAAAGT--ACACTCTG-CTCAAGTTTCTGAAATTGTTCTTCTAAAGTTTGATGTTCTAAAAAATATCTCCTCAA
TCAAAGTGTGCTTTGCGGCACTGTGGATTAA--ATGTTCACAAATTGAGTTGCCTCGAGTCGGATGTATGATTAGTTTGC
AAAGGGTTACCAATTGCCGAACATCTCTGTAACAGAAGGTGGTTTAGTGTGTCAGGGAACCGTTTGAACCTGTTTCTATC
ACTGTTGAATTCCTTTTTTTTAATC-GAGTTTGCTGTTTTGCCAC-----------------------------------
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>chr1B_935
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-----------------------------------------------------CTTCTGAACTGTAGTCTTTTCTATT-A
CAGGAAACAATCTGAATCAAGGCAAGGATTGG---CGTGATGTCTTTCCTGAGGCTGTTACCTCAAAGGTTGCCCCAATT
TGTTAGGTACTCGCACATCTCACCTTTAAAATTTGAGCGCGCCTGTGCTATATCATAAATATTTCCACTATTATGGTGGA
AAGG-ATTTCTGCTTTAATTTGCTTTTTTGACTATGACACACAGGCAGGTGGAGCGAGATGTCGAGACTGTAATCAATGT
TCTGCAGCCAGGTCCAATAGGAATTGTGGAGCATAAGTTCACTGATGCAGAGATCCGCGAGGCGCAAGTCACTGTAAGGA
GTGCCGTTGAGAAATGGCGAAGGAACAGTGCTCTGGAGCGAAATCTTGGCACTGGTTCTTTTCATAAATCGAAGTAGCGC
GCTA-CGTCATGACTTAGTGCA--GCACCAATACTGAAAATAAAAGTGTGCCATGGTTGCAACTGTTGGT----------
---CTTGGTGTAGTTAATGTGTTTTCTCTGTCAGTGAACCAATGCAATTGATCATGAT---CCTCCTCGATGTTCTA-TT
ATCGGCAAAAGT--ACACTCTG-CTCGAGTTTCTGAAATTATTCTTCTAAACTTTGGTGTTCTAAAAAATATCTCCTCAA
----AGTATGCTTTGCAGCACTGTGGATTAA--ATGGTCAAAAATTGAGTTGCCTCGAGTCGGATGTATGATTAGTTTGC
AAAGG---------------------------------------------------------------------------
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>chr1A_936
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------------------------------------------------------TTCTGAACTGTAGTCTTTTCTATT-A
CAGGAAACAATCTGAATCAAGGCAAGGATCGG---CGTGATGTCTTTCCTGAGGCTGCTACCTCAAAGGTTGCCCCAATT
TGTTAGGTACTCACACATCTCACCTTTAAAATTTGAGCAAGCCTGTGCTATATCATAAATATTTCCACTATTATGGTGGA
AAGG-ATATCTACTTTAATTTGCTTTCTTGACTATGACACACAGGCAGGTGGAGCGAGATGTCGAGACTGTAATCAATGT
TCTGCAGCCAGGTCCAATAGGAATTGTGGAGCATAAGTTCACTGATGCAGAGATCCGCGAGGCGCAAGTCACTGTAAGGA
GTGCCGTTGAGAAATGGCGAAGGAACAGTGCTCTGGAGAGAAATCTTGGCACTGGTTCTTTTCATAAATCGAAGTAGCGC
TCTATCGTCATGACTTGGTGCA--GCACCAATACTGAAAATAAAAGTGTGCCGTGGTTGCAACTGTTCGT----------
---CTTGGTGTAGTTAATGTGTTCTCTCTGTCAGTGAACAAATGCAATTGTTCATGATACACCTCCTCGATGATCTA-TT
ATCGGCAAAAGTGTACACTCTG-CTCGAGTTTCTGAAATTGTTCTTCTAAAGTTTGATGTTCTAAAAAATATCTCCTCAA
TCAAAGTGTGCTTTG-----------------------------------------------------------------
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---
>SNPs
--------------------------------S--------------------------S--------------------
--------------S---------------------------S-------------S----------------S------
----------------------------------------S---------------------------------------
-------------------S--------------S-------S--------------------------------S---S
S-S-----SSSSSSSSSSSSSSS---------------------------------------------------------
-------------S---S---S---S----------------------------------------S-------------
--------S-----------------------------------------------------S---SSS-----------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------S----------S
-S-----------------S-S-------------------------------S-------------------S------
----------------SS-SSS-SS-SSSSSSS------------S---S------------S-------S-S-S-----
------------------------------------S---S--------S--S------S-----------SSS------
S-S---------------S-------------S-----------------------------------------------
-----------------------------------S--------------------------------------------
--S-----------------------------------------------------------------------------
-----S----------------------SS--------------------------------------------------
---------------------------------S----------------------------------------------
-----------------------------------------------------------S--------------------
-------------------------------------------------------------------S-------S----
---------------------------------------------------------S----------------------
---------------------------------------------------------SS---------------------
----S---------------S---------SSS----S------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S---SS---S------S-S------
-----SSSSSS----------------S-------------------S------------S--S--S-S-S--------S
-------S----S--------------S-S-----S-S----S--------SSSS-------S-------SS-SSS----
--------------S--------------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS------------------------------------------------------------
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-S----------------------------------------------------------------S-------------
------------------------SS--------------S---------S-----------------S-----------
------S-----------------------------------S--------S---------------S------------
---
>forward_414
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--------------------------------------------------------------------------CTTCAG
CCGAACCCACATCT------------------------------------------------------------------
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>reverse_3572
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---------------------------------------------------CCGTCATACACATGGCTGGT---------
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