>input_sequence_82942
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AT-GGAGGGAA
AAGCTATTCTTCTTTGCCTTATGGTGCTTGTGCAGCTAGGAAATTCCGTTCATGTTGGTATGGAATCACTCTCGTTGTCC
CTATACATGTTTCCTTTCTCCTCTTGAACACAGTAAACTAATATTGTCAGTTGGGCTGCATGAATTTCTTTTAG------
-------------TTTTTTAATTATGTATATTTTTGTCTACAGACAAATGTAGGGCGGTAATTGCCTTTTCAGGCACCAC
ATGCATTGAACTATCTTGCATATTGGCCTGCCAGAAGTCCTTCGGAGATCACGCCATAAACTCGGCATGTAGGCTCGTTG
GCCTAGCCAC-TCTGAATTGTTACTGCAAGGTCTGTTTCTAG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>chr3D_1_TraesCS3D01G531800
ATTTATCATCGCAAGTCTAAGAGGCAAAGACCACTTTATCTGCTCCATGTGGGATCAATATATCTTTACTTTAAAAATGT
ACAACCAAACTATGTGCACTTGTAGAACATCACCTGGCTACC--------------------------TAAGTTTTCATG
CAGTGGTATTACGGCTCCATGGATTCCCCAACGTATTATTTAGAACAACAAATACCTATGGCTCCATCAAAGCCCCTATA
CTCTAGAACAACCAATACTATGGATGTGAAAGTCCTAATTTCGTTGGATCACACACAAATTAGCATCATCATGTCTTTTT
GTGACACGAAAGAAGCTCTACCTCTCAAGGCCACCCTATGACTGATGAGGATCCTCGTCTTGTTCCCCATGATGAGAGCG
TCGATAGCCTCTTGCACCATCCTACTCGGCTCGGACTCGATGGACGATGGAGAAACTTGCCTCATCGAGCAGGATGATGG
GGCGTTCTTTAGCACATTGCGGGTGATGGTGATCCGCTATTTCTGCCAAAGATTTGAATGGGTCACACTCAAAGGTGCAC
AATTTAGTTAGAATATCTACTAAATTAGTTTGTCATATGTAAGATACTAGTAAATACATACATGCAAGCATGTTTATATT
TGGCATAATATTACTCGTACCTTGATATTAGGTCGAATATTAATTGCATGTCAATTATGTGATTA---GCGTTGATATTG
ATATTTGGTATGGCATTAATTGCACGCTAAACATGTTGAGTGCTCACCGTTGGAGCAATCAAGGTCATTGGATAGACATG
GTTTTACGGCTGGGATTAGTTGAATCTCGCCCTTTGGACCTTTTTATGTTAGTATATATAAGTAATAATATTAAATGCAG
GCAATCTGAAAGATATAACCAAAATTTACCTTATTTAAGTGAACCAAGAGTAAATGCTCTCTAGCGACGAGTGTATATAT
AAAGATACAATCGTGTATTATTCTCGACGCCCAAACAGAAACGGGAATAAGAGGTTTGAGCCTGATCTTAT-GGAGGGAA
AAGCTATTCTTCTTTGCCTTATGGTGCTTGTGCAGCTAGGAAATTCCGTTCATGTTGGTATGGAATCACTCTCGTTGTCC
CTATACATGTTTCCTTTCTCCTCTTGAACACAGTAAACTAATATTGTCAGTTGGGCTGCATGAATTTCTTTTAG------
-------------TTTTTTAATTATGTATATTTTTGTCTACAGACAAATGTAGGGCGGTAATTGCCTTTTCAGGCACCAC
ATGCATTGAACTATCTTGCATATTGGCCTGCCAGAAGTCCTTCGGAGATCACGCCATAAACTCGGCATGTAGGCTCGTTG
GCCTAGCCAC-TCTGAATTGTTACTGCAAGGTCTGTTTCTAGAGTTGCACTAAACCATTGTACGTATCAAATAATGGATA
ATGATGAGATCCAGCAATAAAATCCTCTTTGTGACATGCATGCGAGAATGTATATTGATCACCAATTTTGGATGT----T
TTTTTTTTCTTTGTCGTGTGGAATATGATTTGGCTATTTTGTGTTTGCATGGCCTCATTCATGGTTCATATGTTCGGAAA
CTAGTTTTAGCATTATCTGTGGAAACACATGTCCATGGAAAAAGTCCATTTTAAACCTTGAACTCGTAGAGGTTCGGTAG
AATGAACCCTCAAGTCGAAATCCCGGTCGATCGCACCCTGAACTATGCAATTCCGGTCTAAATCGAACCCTGGCATCGTT
T-GAACCAGTCAACCGGGATTCGCCTGTGTTCTTTCAAAAAAAAC-GCCTTGCTTTATATGTAA----------------
T-CA-----------------TGCAAAAGAACTCTGACATTATTTTCCTACATGTAATTTTCCCGCCTCGCCCGGGAATC
GAACCTGGGTCGCGGCAAAATGGCGCGCGCG----CGCGCAGACCACTACACCACACGTCGGCTTGTTTCGTAATACAGG
CCTATATC-GTTTTATACAATAATTTAGACACGTTCGATCTTCCT-TCCCACAAATAAAAAGTTCGCCGCCCCCCAGGAT
TCGAATCTGGGTCCCGCGAAATTCGCAGCGCGTGCACAAATCATCATGCCAATCGATCTGTTTGAGCTAATTACTGGTTT
ACTCTGCCTTTGATTTAAACACTGATTTTTTTTGGGATGAAGACCCACCTAGTTTCATTATGCCTTTTGTAATAGCAGAT
GTAACACTGTTGGCTAAGAAATAAAGATCGAGAGGCTTTCCCTTAAAAAAAACTATAGACACGTCCGGAGCTTTGATGAC
TGTTACGTTTTTT--GTATGCGTTTTTATTTTCGGATTTCTTTTATCCTTTT-TCAGATGTTTGGTATTCTTCGGGTTTT
TAATTATTGCATATTTCTTTGTTATATAGGTTTTGTAATAATCGGTGACGT
>chr3A_1
ATTTATCATCGCAAGTCTAAGAGGCAAAGACCACTTTATCTGCTCCATGTGGGATCAATAT--CTTTACTTCAAAAATGT
ACAACCAAACTATGTGCACTTGTAGAACATCACCTGGCTACC-CACAAGATCCACGTACATGGCTACCTAAGTTTTCATG
CAGTGCTATGACAGCTCCATGGATTCCCCAATGTATTATTTAGAACAACAAATACCTATGGATCCATCAAAG-CCCTATA
CTCTAGAACAATCAATACTATGGATGTGATAGTCCTAATTTTGTTGGATCACACACACATTAGCGTCATCATGTCTTTCT
GTGACACGAAAGAAGCTCTACCTCCCAAGGCTGCCCTATGACTGATGAGGATCCTCATCTTGTTCCCCATGATCAGAGCA
TCGAGACCCTCTTGCACCATCCTACTTGGCTCGGATTCGATGGACGATGGCGAAACTGGCCTCGTCGACCAGGATGATGG
GGTATTCTTTAGCACATTGGAGGTGATGGTGATCGGTTGTTTCTGCCAATGATTTGAATGGATCACACTCAAAGGTGCAC
AATTTAGTTAGAGTATTTACTAAATTAGTTCATCATATCTAAGATACTAGTAAATACATACATGCAAGCATGTTGATATT
TGGCATAATATTACTCGTATCTTGATAATAGGTAGAATATTAATTGCATGTCAATTATGTGATTACTAGCGTTGATATTG
ATATTTGGTATGATATTAATTGCAGAAGAAACATGTTGAGTGCACGCCATTGGAGCAATCAAGGTCGTTGGATAGACATG
GTTTTACGACTGGGTTTAGTTGAATCTCTCCCTTTGCGCCTTTTTATGTTAGTATATAAA--TAATAATATTAAATGCAG
ACAATCTGGAAGATATAACCCAATTTTACCTTATTTAAGTGAACCAGGAGTAAATGCTCTCTAGCGACGAGTGTATATAT
AAAGATACAATCGTGTATTATTCTCGACGGCCAAACAGAAACGGGAATAAGAGGTTTGAGTCTGATCTTAT-GGAGGGAA
AAGCTATTCTTCTTTGCCTTATGGTGCTTGTGCAGCTAGGAAATTCCGTTCATGTTGGTACGGAATCGCTCTTGTTGTCC
CTGTACATGTTTCCTTTCTCCTCTCGAACACAGTAGAATAATATTTCCTGTTGAGCTGTATGAATTTCTTTTAAT-----
-------------TTTTTTAATTATGTATACTCTTGTCTGCAGACAAATGTAGGGCGGTAATTGCCTTTTCAGGCACCAC
ATGCATAGAACTATCTTGCATGTTGGCCTGCCAGAAGTCGTTCGGAGATCACGCCATAAACTCGGCATGTAGGCTCGTTA
GCCTAGCCAC-T-TGAATTGTTACTGCAAGGTCTGTGACTAGAGTTGTACTAAACCATTGTACGTATCAAATAATGGATA
ATGATGAGATCGAGCAATAAAATCCTCTTTGTGACATGCATGTGAGAATATATATTGATCACCAATTTTGGATGTTCTGT
TTTTTTTTCTTTGTCGTGTGGAATAT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>chr3B_81
--------------------------------------------------------------------------------
ACAACCAACCT-TGTGCACTTGTAGAACATCACCTGGCTACCGCACAAGACCCGCGCACCTGGCTACCCAAGTTTTCAGG
CAGTGCTATGACAGCTCCATAGTTCCCCGACA-TATTATTTAGAACAACAAATACCTATGGCTCCATCAAAGTCCCTATA
CTCTAGAACAATCAATACTATGGATTTGTCAATCCTAATTTTGTTGGATCACACACAAATTAGCATCATCATGTCTTTCT
GTGACACGAAAGAAGCTCTACCTCCCATGGCCGCCATATGACTGATGAGGATCCTCGTCTTGTTCCCCATGATCAGAGCG
CTGAGAGCCTCTTGCACCATCCTACTCGGGTCGAATTTAATGGACGATGGAAAAACTGACCTCGTCGAGCAGGATGATGG
GCCGTTCTTTAGCACATTGCGGGTGATAGTAATCCGCTATTTCTGCCAAAGATTTGAATGAGTCACACTCAAAGGTGCAC
AATTTAGTTAGAATATCTACTAAATTAGTTTGTCATATCTAAGATACTAGTAAATACATACATGCAAGGACGTTGATATT
TGGCATAATATTACTCATACCTTGATATTAGGTAGAATATTAATTGCATGTCAATTATGTGATTA---GCGTTGATATTG
ATAGTTCGTATGATATTAATTGCACGCTAAAGATGTTGAGTGCTCACCATTGAAGCAATCAAGGT-GTTGGATAGACATG
ATTTTACGGCTGGGATTAGTTGAATCTCTCCCTTTGGGCCTTTTTATGGTAGTAAATAAC--TAATAATATTAAATGCAG
ACAATCTGAAAGATATA----------ACCTTATTTAAGTGAACCAGGAGTAAATGCTCTCTAGCTACGAGTGTGTATAT
AAAGATACAATTGTGTATGATTGTTGACGCCCAAACAGAAACGGGGATAAGAGGTTTGAGTCTCATCTTAT-GGAGGGAA
AAGCTATTCTTCTCTGCCTTATGGTGCTTGTGCAGCTAGGAAATTCTGTTCATGTCGGTATGGAATCGCTTTCGTTGTCC
CTGTACATGTTTCCTTTCTCCTCTCGAACATCGTAGAATAATATTGTCAGTTGAGATGCATGAATTTCTTTCAAT-----
-------------TTTTTTAATTATGTATGTTCTTGTCTACAGACAAATGTAGGGCGGTAATTGCCTTTTCAGGCACCAC
ATGCATAGAACTATCCTGCATGTTGGCCTGCCAGAAGTCCTTCGGAGATCATGCCGTAAACTCGGCATGTAGGCTGATTG
GCCTAGCCACAT-TGAATTGTTACTGCAAGGTCTGTGACTAGAGTTGCACTGAACCATTGTACGTATCAAATAATGGATA
ATGATGAGATCCAGCAAAAAAATCCTCTTTGTGACATGCATGTGAGATTGTATATTGATCACCAATTTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>chr3D_889
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AGTGAACCGGAAGTAAATGCTCTCTATCTACGAGTCTATATAT
AAAG-TACAATCATGTATTATTCTAGACGCCCAAATAGAAACGGGAATAAGAGGTCTGAGTCTGATCCTATTGGCGGGAA
AATCTATTCTTCTTTGCCTTATGGTGCTTGTGCAGCTAGGAAATTCCATTCATGTTGGTACGGAATCACTCTCCTTGTCC
ATGTACATGTTTTGTTTCTCCTGTCAACCAGAGTTGAATAATATTGTCAGTTGAGCTGCACGAATTTCTTTAAACTTTTG
TCTCAAATTAGACTTTTTAAACTATGTAAGTTCTTGTGTATAGAGCAATGCAGGGCGGAAATCGCCTTTTCAGGCACCAC
ATGCATAGAACTATCTTGCCAGTTGGCCTGCCGGAATTCCTTCGGAGATCACACTATAAACTCTGCATGTAGGCTCGTTA
GCATAGGCAC-GCTGAGTTGTTACTGCAAAGG-TGTGACTAGAGTTGCACTGAACAATTGTAGGCATTGAATAATGGATA
ATGATGTGATCCAACAATAAAATCCTCTT-GTGAAATGCATGTGACAATGTATATTGGTCACCTATTTGGGTGTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>chr3A_1579
CCAGG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AAAAAGTTCATTTTAAACCCTGAATTCGTAGAGGTTCGACGA
ATTGAACCCTCAAGTCGAAATCCCGGTCGATCGCACCCTGAACTATGCATTCCCGGTCTAAATTAAACCCTGGCATCGTT
T-GAACAAGTCAACCGGGATTCGCCTATGTTCTTTCACAAAAACA-CCCTTACTTTATATGTGT----------------
AATCAAGCAAAAG-CCTTGTCTGCAAAAGAAATCTGACATTATTTTCCTACAGAAAAAACA-CCGCCTCGCCGCGGAATT
AAAACTGCGTCGCGGCAATACG--GCGCGCG----CGCACAGACCACTATGCCACTTGTTTGCTTGTTTGATCGTACAGG
CCTATAGCATTTTTATACAACAATTTAGACACGTTCGATCTTTCT-TCACGCAAATAAAAAGTTCGCCGCCCGCCACGAT
TCGAATCTGGGTCCCGCGAAATTCGCAGCGCGTGCACAAACCATTATGCCAATCAATCTGTTCGAGCTAATTACTGACTC
ACTCTCTTTTATACTCTAT-------------------------------------------------------------
-------------------------------------------------AGACAATAGACACGTCCAGAGCTTTGTTGAC
TGTTTCGTTTTTTTGC-ATGTGTTTTTATTTTCGGATATCTTGTATCTT-TTATCAGATGTTGGCTATTCTTCGGGTTTT
TAATTATTGCATATTTCTTTGTTATATAGGTTTTGTAATAATCG-------
>chr3D_1583
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GGAAAAAGTCCATTTTAAACCTTGAACTCGTAGAGGTTCGACAG
AATGAACCCTTAAGTCGAAATCTCGGTCGATCGCACCCTGAACTATGCAATCCCGGTCTAAATCGAATCCTGGCATCGTT
T-GAACCAGTCAACGGGGATTCGCCTGTGTTCTTTCAAAAAAAAACCCCTTGCTTTATATGTAA----------------
T-CAGGCAAAAAGTCTTTGTTTGCAAAAGAACTCTGACATTATTTTCCTACATGAAATTTTCCCGCTTCGCCCGGGAATC
GAACCTGGGTCGCGGCAAAATG----GCGCGCGCGCGCGCAGACCACTACACCACACCTCGGCTTGTTTCGTAATACAGG
CCTATATT-TTTTTATACAATAATTTAGACACGTTCGATCTTCCT-TCCCACAAATAAAAAGTTCGCCGCCCGCCAGGAT
TCGAATCTGGGTCCCGCGAAATTCGCAGCGCGTGCACAAACCATTATGCCAATCGATCTGTTTGAGCTAATTACTGGTTT
ACTCTGCCTTTGATTTAAACACTGATTTTTTTTGGGATGAAGACCCACCTAGTTTCATTATGCCTTTTGTAATAGCGGAT
GTAACACTGTTGGCTAAGAAATAAAGATCGAGAGGCTTTCCCTTAAAAAAAACTGTAGACACGTCCGGAGCTTTGATGAC
TGTTACGTTTTTT--GTATGCGTTTTTATTTTCGGATTTCTTTTATCCT-TT-TCAGATGTTTGGTATTCTTCGGGTTTT
TAATTATTGCATATTTCTTTGTTATATAGGTTTTGTAATAATCGGTGACGT
>chr3B_1583
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GGGAAAAGTCCACTTTAAACCCTGAATTCGTAGAGGTTCGACGA
ATTGAACCCTTAAGTCGAAATCCCGATCGATCGCACCCTGAATTATGCATTTCCGGTTTAAATTGAACCCTGGCATTGTT
T-GAACCAGTCAACCGGGATTCGCCTGTGTTCTTTCACAAAAACA-CCCTTACTTCATATATGT----------------
A-TCAAGCAAAAG-CCTTGTCTGCAAAAGAAATCTGACATTATTTTCCTACAGAAAAAACA-CTGCGTCGC---------
--------------------CG--GCGCACG----CGCACAGACCACTATGCCACTCGTTGGCTCGTTTGATCGTCCAGG
CCTATGAC-AATTTATACAACAACTTAGACACGTT--ATCTTTTT-TCACGCAAATAAAAAGTTCGCCGCCCGCCACGAT
TTGAATCTGGGTCCCGCGAAATTCGCAGCGCGTGCACAAACCATTATGCCAATCAATCTGTTCGAGCTAATTACTGGCTC
ACTCTCTTTTATACTCTAT-------------------------------------------------------------
-------------------------------------------------AAGCTATAGACACATCCAGAGCTTTGTTGAC
TGTTTCGTTTTTTTTGTATGTGTTTTTATTTTCGGATTTCTTGTATCTT-TTATCAGATGTTGGCTATTCTTCGGGTTTT
TAATTATTGCATATTTCTTTGTTATATAGGTTTTGTAATAATCG-------
>chr1D_1583
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GGAAAAAGTCCATTTTAAACCTTGAACTCGTAGAGATTCGGCAG
AATGAACCCTCAAATCGAAATCCCGGTCGATCGCACCTTAAACTATGCAATTCCGGTCTAAATCGAACCCTGGCATCGTT
T-GAACCAGTCAACCGGGATTCGCCTGTGTTCTTTCAAAAAAAAC-GCCTTGCTTTATATGTAA----------------
T-CAA-GCAAAAGTCTTTGTTTGCAAAAGAACTCTGACATTATTTTCCTACATGAAATTTTCCCGCCTCGCCCGGGAATC
GAACCTGGGTCGCGGCAAAATG----GCGCG----CGCGCAGACCACTACACCACACGTCGGCTTGTTTCGTAATTGAGG
CCTATATC-GTTTTATACAATAATTTAGACACGTTCGATCTTCCT-TCCCACAAATAAAAAGTTCGCCGCCCGCCAGGAT
TCGAATCTGGGTCCCGCGAAATTCGCAGCGCGTGCACAAACCATTATGCCAGTCGATCTGTTTGAGCTAATTACTGGTTT
ACTCTGCCTTTCATTTAAACACTGATTTTTTTTGGGATGAAGACCCACCTAGTTTCATTATGCCTTTTGTAATAGCGGAT
GTAACACTGTTGGCTAAGAAATAAAGATCGAGAGGCTTTCCCTTAAAAA-------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>chr2B_1583
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GGAAAAAGTTCATTTTAAACCCTGTACTTGTAAAGGTTCGACGA
AATGAACCCTCAAGTCGAAATTCCGATCGATCGCACCCTGAACTATGCAATCCCGGTCTAAATCTAACCCTGGCACCGTT
TTGATCCAGTCAACCGGGATTCGTCTGTGTTCTTTCACAAAAAAA-CCCTTGCTTTATATGTAA----------------
T-CAAAGCAAAAGCCCTTGTTTGCAAAAGAAGTCTGACATTATTTTCCTAA--AAAAAATA-CTGCCTTTCCCGGGAATC
GAACCTGGGTCACGGCAAAACG--GAGCCCG----TGCGCAGACCACTTCGCCACCTGTTGCCTTGCTTGATAGGTGAGG
CCTAATAC-TTTTTATAGAATAACTTAGACACGTTCGATCTTTTCCTCCCGCGAATGAAAAGCTCGCCGCCCGCCAGGAT
TCGAATCTGGGTCCCGCGAAATTCGCAGCGCGTGCACAAACCATTATGCCAATCGATCTGTTCGAGCTAGTTACTGGCTT
ACTCT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>chr1B_1583
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GGAGAAAGTCCATTTTAAACCCTGAATTCGTAGAGGTTCGACGA
ATTGAACCCTCAAGTCGAAATCCCGGTCGATCGCACCCTGAAATATGCATTCCCGGTCTAAATTAAACCCTGGCATCGTT
T-GAACCAGTCAACCGGGATTCGCCTATGTTCTTTCACAAAAACA-CCCTTACTTTATATACCCTTACTTTATATATGTA
A-TCAAGCAAAAG-CCTTGTCTGCAAAAGAAATCTGACATTATTTTCCTACAGAAAAAACA-CCGCCTCGCCGCGGAATT
AAAACTGCGTCGCGGCAATACG--GCGCGCG----CGCACAGACCACTATGCCACTTGTTTGCTTGTTTGATCGTACAGG
CCTATAGCATTTTTATACAACAATTTAGACACGTTCGATCTTTCT-TCACGCAAATAAAAAGTTCGCCGCCCGCCACGAT
TCGAATCTGGGTCCCGCGAAATTCGCAGCGCGTGCACAAACCATTATGCCAATCAATCTGTTCGAGCTAATTACTGGCTC
ACTCTCTTTTATACTCTAT-------------------------------------------------------------
-------------------------------------------------AGACAATAGACACGTCCAGAGCTTTGTTGAC
TGTTTCGTTTTTTTGC-ATGTGTTTTTATTTTCGGATATCTTGTATCTT-TTATCAGATGTTGGCTATTCTTCGGGTTTT
TAATTATTGCATATTTCTTTGTTATATAGGTTTTGTAATAATCG-------
>chr3B_1584
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GAAAAAGTCCACTTTAAACCCTGAATTCGTAGAGGTTCGACGA
ATTGAACCCTTAAGTCGAAATCCCGGTCGATCGCACCCTGAATTATGCATTCCCTGTTTAAATTGAACCCTGGCATCGTT
T-GAACCAGTCAACCGGGATTCGCCTGTGTTCTTTCACAAAAACA-ACCTTACTTTATATATGT----------------
A-TCAAGCAAAAG-CCTTGTCTGCAAAAGAAATCTGACATTATTTTCCTACAGAAAAAACA-CTGCGTCGCCGGGGAATC
AAACCTGCGTCGCAGCAGTACG--GCGCACG----CGCACAGACCACTATGCCACTCGTTAGCTCGTTTGATTGTCCAGG
CCTATGAC-AATTTATACAACAATTTACACACGTT--ATCTTTTT-TCACGCAAATAAAAAGTTCGCCGCCCGCCACGAT
TCGAATCTGGGTCCCGCGAAATTCGCAGCGCGTGCACAAACCATTATGCCAATCAATCTGTTCGAGCTAATTACTGGCTC
ACTCTCTTTTATACTCTAT-------------------------------------------------------------
-------------------------------------------------AAGCTATAGACACATCCAGAGCTTTGTTGAC
TGTTTCGTTTTTTTTGTATGTGTTTTTATTTTCGGATTTCTTGTATCTT-TTATCAGATGTTGGCTATTCTTCGGGTTTT
TAATTATTGCATATTTCTTTGTTATATAGGTTTTGTAATAATCG-------
>SNPs
-------------------------------------------------------------SS--------S--------
--------------------------------------------------------------------------------
-----S---S--S------------------S----------------------------------------S-------
-----------S-----------------S-----------S------------------------------------S-
------------------------S-------S----------------------------------------S------
----S------------------------------S---------------------S-----S----------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------S-----
---------------------------------S----------------------------------------------
------------SS----------------------------------S-----------------S-------------
----------------------------S--------S--------------------S-SS------------------
S-------------------S--S----------------------S---------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--S---------------------S----------S-S---------------S-------------------S------
--------------------------------S-----------------------------------------------
------S--------------S----------------------------------------------------------
------------------------------------SS------------------------------------------
------------------------------------------S-------------------------------------
--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
----------------------SS--------------------------------------------------------
------------------------------------------------------------------------S-------
----------------------------------------S---S-----------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
---------------------------------------------------
>forward_405
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CCCATGATGAGAGCG
TCGAT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>reverse_1566
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TGCATGGCCTCATTCATGGT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
