>input_sequence_82898
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----------------------------------------ATGGAGGGCATCTTCCCCTTCTTCTGCTCGGCCATCAGGA
GGCGGAGGCCGAGGCCGCCGGACCGCTACGGGCGCCTCGCCGTCCCCGCCGGCGCGGCGGGTGGGCTTGGGCGGGAGCAC
GAGAGCTTGGCCGGCAGCGGGCACTACCAGT------ACTCTCAGAGCTGCAGGTTCCCCGTCCGACGTCCCGGGGCGGA
CGAG------CTCGGCCTCGGCAACGACGACGACCGGCCGCCACCAGAGGACCTCTCCGGCGAGCTATCCCCGGCGTCCG
GCGGCCGGGACGGCGGGCGCGGGCTGTCCAGGTCCAGGAGGTTCGGTAGCATGCGCATGTTGGCGTCGTGTATCGGCGGC
CCGTGA--------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G305600
CGCGCCTGGCCTCCATCTCCCTCCTCCCCCGCCATCCACGCGCCAAGAGCTAGCCCTCCACTCCGAGATGGCTCGACGGT
GAGAAACCGGGGACGGAGGAGGGGCAGGACTCGCCTGCCTCGACGGGGAACGCGGCGGAGGGCCGGTCGGCGGT------
-----------TTTTTTTTTTTTTTGCGAAATCCGGTGGATTTGGTGGGGTTGGGGATCCACGGGAGGAGGGGGGCTTAG
CCCCGGCCCGCTCGACGAGATTATTACGCTTTCTCT---ATCGGCCCGGTCCACCAAGACACACGAAGCGGCAACGGGCC
TCCATTTCAACCATCATTAAATCCTAAAAAAGATCAACATCATTCATCCCAAAAAGGAAAAAG-----------------
-AGTTTGAGTGATCCCCGGCC--------------GGCGGTGCGCAAAAATGCTAGACTTACGTAATGCTGTTACGTATC
CTACGTAATCCTTCTTTTCCCTAACCAAACGCCCTCCCCCCTGATTTTCAGGGTGGGCCCCAGCCTCCACTAATATCCAA
TTGAAGGATGCCAACTCATTTCATTCGTAAGATACGTAAAAATATTTTCGTAGGTGCGTACGTGCACGAGTC--------
-ACCTGCGAATCCGCAACTGATGTCGGTTAAGCAGCTGTGGAACGCTCGCTGGCCATCAAGAGATGATCGATCGTGCTGT
GCCACTCCATGCCTCCATCATCTCCATGTGAAACTCCTGTTCCCGTCTCGTGGTCCG-------TCACATGCATACGCAG
CACG-----GTCGTTGCAACCATCGACAGAGCCTGCCATCAATCATGCTGATCATCAGATTAACAAATGCGCAAGTCAAA
TCGCCACTGTCCTCTTCCGC-TATAAGAAACGTGATGAGGATGCCAGTTCGTCCCATCCCTCAGTTCCTCGAATCTCGCC
ATGAAACCAGACAAGCAGTCG------AGCACCTGCCTGCGCGCAGATGACTGACCCAGCAAACTAGCAAGAACTTCCGC
TGCTCGGCTCGGTCGATCTACTGCTTGATCCGGGCCGGCGATGGAGGGCATCTTCCCCTTCTTCTGCTCGGCCATCAGGA
GGCGGAGGCCGAGGCCGCCGGACCGCTACGGGCGCCTCGCCGTCCCCGCCGGCGCGGCGGGTGGGCTTGGGCGGGAGCAC
GAGAGCTTGGCCGGCAGCGGGCACTACCAGT------ACTCTCAGAGCTGCAGGTTCCCCGTCCGACGTCCCGGGGCGGA
CGAG------CTCGGCCTCGGCAACGACGACGACCGGCCGCCACCAGAGGACCTCTCCGGCGAGCTATCCCCGGCGTCCG
GCGGCCGGGACGGCGGGCGCGGGCTGTCCAGGTCCAGGAGGTTCGGTAGCATGCGCATGTTGGCGTCGTGTATCGGCGGC
CCGTGAGATCAACGCACCGCTGCTGTCTGTACTC----------TA--TAGTCTAGCGTGTGTGTACCAAGGAAGAAATT
AATCCGTACCGCGCACTCGGCAGTATTTTTTTCTTTCTTTTTTTAGATCTGGCAGTTTTTTGTTTTAACTTTCGCGCATT
-------------------------------------------------------------GGGCAGTTTTCCACTCCCT
CCAACCAAGCTTAG-GTTTTGGGTACCGAGCAAACATT-GACAAAAGGCGTGAAATAAATTCAAACAAATGCGAGCGCCC
AACCATACGTTGGTAGTCGCCTACCCAGGCAATCACCCTCTCTCATGGACATCATTTATTCTTTATGTTCTTCAATTGTG
TCCAACTTAGGACAGGCTCGTAGGAGGACAGCGGTA-TCCCCAGTCCATCAGGATTTATGTCCTAAACTTAATATTGGTG
CTTATATTTTT-CTAGATTTATTATTTCAGACTTTTCGGCGGTGTTCGTTAAATGGAAGGAGATGTTTTCCTCGACTATG
AGGTGCGTTTGATGACTTTGTCAATCTTAAGATGATGTGCCGGTCATTTTCTTGGAGCGAAGGTGCTCAGTAAGGATAAG
GCATACGTGTGTGTGTGTGTGTATATAGGTGTATATATGCTCGTGTATGTAGGCGACTTCGATTGTATTGTATTAAAAGA
AACAGTGTCAATCTTTGGCATGACTGA-----------------------------------------------------
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----------GTGAGCAACACACACTATAAGTCACCATGCTCCAAAGCGGTAAGTGGAGGGGAGGCAAATCCACAAACTC
GTAGATAAAGTCTAAAGGAGAGAGTTTATCCTAGCCATCTAGGATTAGGGAAGAAAACAAGAGGAATTCTTCACATAACA
GATTTTAGGTTAATTGGGTTGACCTTTTGTGTCGGTGGTTTGGCACATATAGCTGCCATGTTTTTAGGCTGAAAATTTAG
ATGTGAAAGTCAATCCGTTTTCACTCGAACGTGAAATT-GACACTCCTTCCATACTCTTAAAATCAACAAAGAAGGTTAA
GATTCTCTAAGATTTATAGTTGCTTTT-----------------------------------------------------
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>chr5D_1
CGCGCCTGGCCTCCATCTCCCTCCTCCCCCGCCATCCACGCGCCAAGAGCTAGCCCTCCACTCCGAGATGGCTCGACGGT
GAGAAATCGGAGACGGAGGAGGAGCACGACCTGCTTGCTTGGACGGGGAAGGCGGCGGAGGGCCGGCCGGCGTTCTCTCC
GGTGGATTTGGTTTTTTTTTTTTTGAGGGGTTCCGGTGGATTTGGT---GTTGGGGATCCACGGGAGGAGGGTGGCTTAG
CTCCAGCCCGCTCGACGAGATCAGTACGCCTTCTCTCCGATCGGCCCGGTCCACCAAGACACACGAAGCGGCAACGGGCC
TCCATTTCAACCATCGTTCATCACAAA------------------------------AAGAAAAAGAAAAACTCAAAAAA
AAGTGGGAGTGATCCGCGCGGCCGGCGGTGGGATGGGAAGAGAAGAATTTTCGCATGCAGTGA-----------------
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------------------------------------------------CGTAGGTGGGTACGTGCACGAGTC--------
-ACCTGCGAATCCGCAACTGATGTCGGTTAAGCAGCTGTGGGATGCACGCTGGCCATCAAGAGATGATCGATCGTGCTGT
GCCACTCCACAC---------CTCCATGTGAAACTCCTGTTCCCGTCTCGTGGTCGGTCACATCTCACATGCATACGCAG
CGCG-----GTCGTTGCAACAATCGACAGAGCCTGCCATCAATCATGCTGGGATGCAGATTAACAAATGCGCAAGTCAAA
TCGCCACTGTCCTTCTTCCGGTATAAGAAACCTGATGAGGATGCCAGTTCGTTCCATCCCTCAGTTCCTCAAATCTCGCC
ATGAAACCAGCCAAGCAGTCAAGCTCAAGCACCTCT----------------------GCAAATTAGCAAGAAGCTCCGC
TGCTCTGCTCGGTAGATCTGTTGC----TCCGGGCCGGCGATGGAGGGCATCTTCCCCTTCTTCTGCGAGGCCATCAGGA
GGCGGAGGCCCAGGCCGCCGGACCGCTACGAGCGCCTCGCCGTCCCCGCCGGTGCGGCGGGTGGGCTTGGACGGGAGCAC
GAGAGCTTGGCCGGCGGCGGGCACTACCAGTACCAGTACTCTCAGAGCTGCAGGTTCCCCGTCCGACGTCCCGGGGCGGA
CGACCTCGGCCTCGGCCTCGGCCACGACGACGACCGGCCGCCACCGGAGGACCTCTCCGGCGATCTGTCTCCGGCGTCCG
GCGGCCGGGACGGCGGGCGCGGGCTGTCCAGGTCCCGGAGGTTCGGTAGCATGCGCATGTTGGCGTCGTGTATCGGCGGC
CCGTGAGATCAACGCACTGCTGCTGTCTGTACTCTATACTCTAGTA--TAGTCTAGCGTGTGTGTACCAAGGAAGAAATT
AATGCTTACCGCGCATTCGGCAGTATTTTTTTCTTTTCTG----AGATCTGGCAGTTTTTTGTTTTAGCTTTCGCGCATT
CCGCAGTATTTTCTTTTCTTTTCTGAGATCTGGCAGTTTTTTGTTTAAACTTTTGTGCATTCGGCAGTTTTCCACTCCCT
CCAAGCAAGCTTAG-TTTT-GTGTACCGAGCGAATATT-GACGAAAGGCGTGAAATAAATTCAGAAAAATGCGAGCACCC
AACCATATGTTGGTAGTCGCCTACTCACGCAATCACCCTCTCCCATCGACATCCTTTACACTTTATGTTATTCAATTGTG
TCCAACTTGGGACATGCTGGCAGGAGGACAGTGGTATTCCCCAGTCCATCAGGGTTCATATCCTAGACTTAATATTGGTG
CTCATATTTTT-CTAGATTTATTATTTCAGACTTTCTGGCGATGTTCGTTAAGTGAAAGGAGATGTTTTCCTCGACTACG
AGGCGCGTTTGATGACTTTGTCAATCTTAAGATGATGTGCCGGTCATTTTCTCGGAGTGGAGGCGCTCAGTAAGGATAAG
ATATAC------TTGTGTGTGTTTATAGTTGTAAATATGCCCGTGTATGTGAGCGACTTCGATTGTATTGTATTAAAAGA
AATTGTGTCAATCTTTGGCATGACTGA-----------------------------------------------------
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----------GTGAGCAACAGACACTTTAGGTCACCACGCTCCAAAGCGGTAAGCAGAGGGGAGGCAAATCCACAAACTC
GTAGGTGAAGTCTAGAAGGAAGAGTTTATCCT-GCCATCTAGGGTTAGGGAA-AAAACAAGAGTAACTCTTCACGTAACA
AATTTTAGGTTAATTGGGTTGACATTTTGTGTCGGTGGTTTGGTACATATAGCTGCCATGTTTTTAGGCTGGAAATTTAG
ATGTGGAAGTCAATCCGTTTTCACTCGAACGTGAAATT-GACACTCCTTCCATACTCTTAAAATCAACAAAGAAGGTTAA
GATTTATAGTTGC------TTTTTTTAACATAATACATACACATACGCTTATATATATGTGCATACATTCATCTTTATAA
ACGCACGCACATCATACACC-----GCACATCTACGAAATGAGTCGGCATATCATT-TTGAGATTGACGAAATCGTCATA
GACACATTCATAGCCAGTGGGAATATCTCCTTCCACTGAACACACATTGCCAAAAGGCGTGAAAATAAATTCAGAAAAAT
GCGAGCACCCAACCATAGGTTGGTAGTCGCCTACTCACCCAATCACCC--------------------------------
----------------------------------GAGAACAGTGGTATCCCCAGTCCACTAGA-TTTCAAATCCTTGACT
TAAA----------------------------------------------------------------------------
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-------------------------------------------------CATTGGTGCTCACATTCTTTGGATTTATTTC
AAACTTTTCGGCGATGTTCACTAAGTGCAAGGAGACGTTTCCCTCAACTACGAGGCGCGTTTGATGACTTTGTCAATCTT
AAGA----------------------------------------------------------------------------
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>chr5B_1
CGCGCCTGGCCTCCACCTGCCTCCTCCCCCGCCATCCACGCACCCAGAGCTAGCCCTCCCCTCCGAGATAGCTCAACGGT
GAGAAACCGGGGACGGAGGAGGGGGAGGACTCGCCTGCCTGCACGGGGAAGGCGGCGGAGGGCCGGCCGGCGTTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTC------TCCGGTGGATTTT-TGGGTTTGGGGATCCACGGGAGGAGG-TGCCTTAG
CTCCGGCCCGCTCGACGCTT-------------TCTCCGATCGGCCCGGTCCACCAACACACACGAAGCGGCAACGGGCC
TCCATCTCAAGCATCATTCATGACAAA------------------------------AAAAAT-----------------
-GGTGCTAGGGATCCCCGGCC--------------GGAAGAGAAGAATTTTCGCACGCAGTGA-----------------
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------------------------------------------------CGTAGGTGCGCACGTGCAGGAGTCACCTGACT
CACCTGCGAATCCGCAACTGATGTCGGTTAAGCAGCTGTGGGATGCACGCTGGCCATCAAGAGATGATCGATCGTGCTGT
GCCACTGCATGCG---------TCCATGTGAAACTCCTGTTACCGTCTCGTGGTCACATG-----CATATGCATATGCAG
CATGGCATAGTCGTTGCAACCATCGACAGAGCCTGCCATCAATCATGCTG---ATCAGATTAACAAATGCGCAAGTCAAA
TCCCTACTGCCCTCTTCTGC-TATAAGAAACCTGATGAGGATGCCAGTTCGTTCCATCCCTCAGTTCCTCAAATCTCGCC
ATGAAACCAGCCAAGCAGTCA------AGCACCTCT----------------------GCAAATTAACAAGAAACTTCGC
CGCTCTACTCGGTGGATCTGTTTC----TCCGGGCCGGCGATGGAGGGCATCTTCCCCTTCTTCTGCTCGGCCATCAGGA
GGCGGAGCCCGAGGCCACCGGACCGCTACGAGCGTCTCGCCGTACCCGCCGGCGCGGCGGGTGGGCTCGGGCGGGAGCAC
GAGAGCTTGGCCGGCGGCGGGCACTACCAGT------ACTCTCAGAGCTGCAGGTTCCCCGTCCGACGTTCCGGGGCGGA
CGAG------CTCGCCCTCGGCCACGACGAGGACCGGCCGCCACCGGAGGACCTGTCCGGCGAGCTGTCTCCGGCGTCCG
GCGGCCGGAACGACGGGCGCGGGCTGTCCAGGTCCCGGAGGTTCGGCAGCATGCGCATGTTGGCATCTTGTATCGGCGGC
CCGTGAGATCAGCGCACCGCTGCTGTCTGTATTC----------TGTGTAGTCCAGCGTGTGTGTAC-AAGGAAGAAAT-
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>chr5B_1417
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AATGCGTACCGTGCATTCGGCACTATCTTTTTTCTC--------------------------------------------
-------------------TTTCTGAGATCTGGCAGTTTTTCCTTTAACTTTCAC-GCATTGGGCAGTTATCCACTCCCT
CCAACCAAGCTTAGGTTTT-GGGTACCGAGCGAACATTGGACGAAAGGCGTGAAATAAATTCAAAGAAATGCAAGCGTCC
AACCATACATTGGTAGTCGCCTACTCACGCAATCACCCCCTCTCATGGACATCATTTATCCTTTATGTTTTTC--TTGTG
TCTAACTTGGGACAGGTTGGTAGGAGGACAGCGGTATCCCCCAGTCCATCAAGGTTCATGTCCTAGACTTAATATTGATG
CTCATATTTTTTCTAGATTTATTATTCCAGACTTTCCGGCGATGTTCTTTAAGTGAAAGGAGATGTTTTCCTCGACTACG
AGGCGCGTTTGATGAC-TTGTTAATCTTAAGATGATGTGCCGGTCATTTTCTCGGAGCGGAGAGGCTCAGTAAGGGTAAG
ATATAC------GTGTGTGTGTTTATAGGTGTATATATGCTCGTGTATGTGAGCGACTTCGATTGTATTGTATTAAAAGA
AAGAGTAAAATGCACCCGCGGTCATTAAACTTGTGTCAAAAGCTCACTTTGGTCACTGTACTTAAGAATACAGTCAATAC
GATCATTATATACAACTTGAGGTGATTATACGGTCACTGGGTCACCGTATAGCTCCGTATTTTTCTCTGTTGACTGGTCA
AACATCACAACACCCTATATGGGCCCCATCTGTCAATTAAAAAATGCCATGCGTGGCAGGAGAACCAGCGATCATCTGCT
GAAGCCCACGTACGCACACAACTGTGCCCACACAACTTCGTTTTAATATGTACTCACAGAACACGCATACAGCACACTTG
AATGCATATTTAATTAACACGCACACAACACACTTAAATCGCATGCACGCAACACTTTCGCAAGCCGTTGGGCTACTTGC
ACAACACGAGGTTGAGGCGCGACGTTGTAGTGTCGCAGTTCTTTGTCGACGTCGCCATCCTTCTGGCGGTGCACATCCTC
GGCGCCGTCGCCATTATGGGTATCATTTACGTGTCGCCGGTGGCAAGGCAAAGATGAGTGGTTAGATAAGAGGGTGTCCT
AAAACCTATGCTCTACAATATGTTTACCGGCAAGGCGAACGCTATGGGGCAAGGTCTAGATGTGTGAACCTTCGCCGTGC
TCATCATGGTGTCCATGTTGTCGAGCTAACAGCTAAGGCCTGTGCGGCTGCGCGTGCATGCCGGTGAACGGGAACATGGC
CATGTTCAAGCGAGCACACCGGTCTCAGCTGCTTGTGCCGAGACACTGGTCGAGAATGTAAGATGAAATAGCACGAGAAA
GACTGCAACTGCAACTATTTTCGACCGTATTCATTCACCGTGCTCAACTGTATTCACCATCATCGCACGAGAGAATGTAC
AGGGATGATGAGCAGGTAGGTGCGGCAACTACGCTAACAAGCAAGGATGGCGTGGCGACGGCGGTATCCTCGTGGTGGAC
CTTTGTCCTCGGGCTCTGTCGTTGCGACGACGTTTGCTCCAGCATCGGCGTGGAGCTTGGAAGGTAGTCCAGGAACGAAT
GCAGACTATGGTAAGCAACAGACACTTTAAGTCACCACGCTCTAAAGCGGTAAGCAGAGGGGAGGCAAATCCATGAACTC
GTAGGTAAAGTCTAGAGGGGAGAGTTTATCCTAGCCATCTAGGAGTAGGGAAGAAAACAAGAGGAACTTTTCACATAACA
GAATTTAGGTTAATTGGGTTGATATTTTGTGTCGGTGGTTTGGTACATATAGCTGCCATGTTTTTAGGCTAGAAATTTAG
ATGTGAAAGTTAACCCGTTTTCACTCGAACGTGAAAATCGACACTCTTTCCATACTCTTAAAATCAACAAAGAAGATTAA
GATTCTCTAAGATTTATAGTTTTTTTGACATAATACATACACATACACTTATATATGCGTACATACATTCATCTTTATAA
ACGCACGCACATCATACACCTATGAGCACCTCTAAGAAATTGAGTCTCCGTATCATCTTGAGATTGACGAAGTCATCACA
AACACCTTCATAGCCGGTGGGGATATCTCCTCCCACTGAATACACATTGCCAAAAAGCATG-AAATAAATTCAGAAAAAT
GCGAGCACCCAACCATAGGTTGGTAGTCGCCTACTCACCCATTCACCCCCTCCCATCGACATCCTTTACCCTTTATGTTC
TCCAATTTGTGTCCAACTTGTGATAGGTTGGTAGGAGGATAGTGGTATCCCCAGTCCACTAGGTTTTCAAATCCTAGACT
TAAAAGTGGGCTAATTTTGCCTGACAAACTTCGATGGCAAAATCCTTTCCAAAATTTTGAGTCGTCTTTAAACTCTTTTC
TTTGTCTCATTTCGAATGAATTGACTTTTATTCCTTATTCTGATCCAACTCTGTTGTTGAGACAACTGAAAATTGTGTTT
ACTTGTTCTGAAATCCTTTATCTTTGATTTGTGAAATCCTTGGTTTAGACATTGGTGCTTGCATTCTTTGGATTTATTTC
AATCTTTCCGGCCATGTTCATTAAGTGGAAGAAAACGTTTCCCTCGACTACGAAGCGCGTTTGATGACTTTGTCAATCTT
AAGATGATGTGCCGGTCATTCTCTCGGAGGTGCTCAATTGGGGGTAGGGTATGTGTGTGTGTGATTATAGCCTAGGAATG
GGTGTATATATATGCTCGTGTATGTGAGCGACTTTGACGGTATATATTGTATTAAAAAAAATTGTGTCCACCTTTGACAC
GACTGGGTGCGCAACGGACACTCTA
>SNPs
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----------------------------------------S---------S---------------S-----S-------
------------------------SSS-SSS-----------------------------------------S-------
-S-------------------S-S-----S--------------------------------------------------
------------------S-SSS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----------------
----SS-------------------------------SS-S-SSS--SSS-SSS-SS-SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
-----------------------------------------S-S--S---------------------------------
------------SSSSSSSSS----------------------------------S------------------------
--------------------------------------------------SSS---------------------------
-------------------------------S--------------------S-----------------S---------
----------S---------S-------------SSSSSSSSSSSSSSSSSSSSSSSS-----S---------SS-----
-----S-------S-----SS---SSSS----------------------------------------------------
------------------------------S-------------------------------------------------
---------------S----------------------------------------------------------------
----------------------S----------------------S--------------------S--S----------
-----------------------------------S--------------------------------------------
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---S-----------S--------------------SS-SSSSS-----------------------S------------
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---------------S---S-----------S----------S----------------------S--------------
------------------------S--S-------------------------------S---------S----------
--------S---------S----------------------------------S--S--------S--------------
--S--------------------------------S-----S----------S--S----------------------S-
---S------------------------------------------------S------S---S----------------
SS----SSSSSS----------S---------------------------SS----------------------------
--S-----------------------------------------------------------------------------
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--------------------S-----S----------S----------------SS------------------------
----S---------S---S-----------------------------------------------S-------------
-----------------------S-------------------S---------------------------S--------
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---------------------SS---S-----------------------------------------------------
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>forward_516
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----------------TTCCCTAACCAAACGCCCTC--------------------------------------------
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>reverse_1785
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------------------------CCAGGCAATCACCCTCTCTC------------------------------------
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