>input_sequence_82893
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-------------------------------------------------------------------------------A
TGGAGATAGAGTCGGTCAAGTGTGAGTGCTGTGGCCTGAGGGAGGACTGCACCCAGGACTACATTGCGAGCGTGAGAGCC
AGCTTCTACGGCCAGTGGCTGTGCGGGCTGTGCTGCGAGGCCGTGAGGGACGAGGCCGGCAGGAAGAAG---GCTCACCC
CGGCGTGGAGGAGGCCGTGCGGGCGCACATGGCGTTCTGCAAGAAGTTCAAGTCCAACCCCGCCGTCCGGGTCGCCGACG
GCATGCGCCAGATGCTCCGCAGGCGGTCCGGTGACTTGTCCAAGCCGTCGGGCTCCTCCT---CCAA---CAAGTACAGC
ACTGCGCAGGTCGGAGATGATTCATCCGTGTCGCTAT----ATTGA----------------------------------
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>chr4A_1_TraesCS4A01G295100
GTAAATCATGATTCCATC----ATGCAATAACCAATTCAATTTCATCTGAAAAATGATTCACCACCAGCAAAGATTCCAT
GGGCCAGTGTAAATCGTGGAATCCATTTGCCATCCTTCCTGAAAAGAGGTGTCAACCGACTAAAGGTAGACCTAAACCTT
TTTAAACATAA-----------ATAAAATTGATACTACCGTGTATGCCCTCCACCTCGAAATCCTAATCACAGGTGGCTG
CTGGAATCTGTATGGTAATTTTTT-GTTTAATTTTGTCTTTAGCAAGCCATGTGCTGAATCTATATGGTAATTTTCAAAT
AGAAAGGCTAGTGGATGGAGTAAGTGTACATCCTCGAACGATATGCGAACTCACAATTATGCAACTCAGAGTATCTCAGG
AACCAACTGCCACTTATAAAGGACGAGCAAGCATGGACAGTATTGATTGACAAGAACATA-------------------C
TACGGCACTTTGAGTTTATGGAGTAACTTGTGCTGGTGCATAAAACCTAATCTGGTAGCAGGGTGAGATGTCCTCCCTCT
GGCAGCTGGTTGGCTCATGTCACCAGAAACAGCACTGCCTGGCTCAAACATTT--------CCATACCTACAGG------
-------AAACTGAAACCTGACAAAGAACCAACTCCTTTTAACCTGAAAAATATGTATACTAGG----------------
----------------------------TGGCACCGGTGGATTGATCAGCAAGGGACAAAGGTTGCATTTTGTGTGGAAG
GGGAGAGGCCCCCCAAATTCCCACAGCAACAGCAACACTTTCCAGCCACCAACTGATGCCAGAATTTTTAAATGCCAGGA
AAA-GGCCAGCAAAT-----AGGCTCACACCCAACTAACTCTGTCTCAAATCTCTCGCCTCAGAACATGCAGCAACGCCT
TCCAATCATAAATACACCCCATCCCATCCCCACCCCTGCCC-TCACAACCGTAATAACCTCC----TCCCCTACAAATAG
CCTC--------CCAACCAAGGCCAGCACAGCACACCACAGCACACCACAGCACAGAGCAATAGCCATAGCCAGCAGCAA
TGGAGATAGAGTCGGTCAAGTGTGAGTGCTGTGGCCTGAGGGAGGACTGCACCCAGGACTACATTGCGAGCGTGAGAGCC
AGCTTCTACGGCCAGTGGCTGTGCGGGCTGTGCTGCGAGGCCGTGAGGGACGAGGCCGGCAGGAAGAAG---GCTCACCC
CGGCGTGGAGGAGGCCGTGCGGGCGCACATGGCGTTCTGCAAGAAGTTCAAGTCCAACCCCGCCGTCCGGGTCGCCGACG
GCATGCGCCAGATGCTCCGCAGGCGGTCCGGTGACTTGTCCAAGCCGTCGGGCTCCTCCT---CCAA---CAAGTACAGC
ACTGCGCAGGTCGGAGATGATTCATCCGTGTCGCTAT----ATTGAGGAGTACACCATTACCATTCTATGGCTTGTAGAC
CGACCGCCTAGTGCTTTTCTCAGGCTTGAATCTCCTGTTTCTTTTGTCGTTTTTGGCATATATTCTTATGATGGCAAGAA
GTTAGAATGTACAGAAAGTCATAAATTGCTTCGAAATGAATGCTGATAG----TGCTTGGCTTTGATATGAGGCTGCGTT
TTTTTTTGTTCGTTTTAAGAACAGAAGCAATCATGAGTTGCCAACATATACTACTACTACTACTTAGATAGATGAGTTAA
TTGGTTTCTTGTTGCAACCTAACAAAGACAAAGAGGAGGTTAGCATGCATGTGCAAGCAACATTGTTCACACTACTCGCT
GTGTCTGACGTGATTTGCGATGGAGACGCCGCACCAAGAATCAAGGCAA---TCTATTTATCA----ATGTACCGGTATT
ACCTAAAGCTGGTGGCTGCTGTTGCACCACTATACTG--ACTGTGATCAAGATTATAGTGATAGCTATAAAGTGACAGCA
TTTGGAACTACTCCTCTTTTTTCCCCTTTCCAACGTTCAAATTATAGCGATAGCTGCTGACCAAAGCATGTGCAGTTTGA
TATCAAGATTGTAGAAGTATTGTGATTTCTCATATGAGCGTGTGGTCTAATCAGGAACAGGTTGAGGACACT--------
----------------------ATCAGTTCAACAGTCCTGAAGACAAGGATAGACTATTTA-------------------
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---------------------------------------------------------------AGTGAAACACTGCTTAA
GTGGAGTTGTGATGGTACTATCACTTGTATTCATGACCAAGTTCTACGAACATTGGACAGTGCATAAAACTAGACAACTT
ATTGTGGACTACTCTTTGGGTTCTAGCACATGGGATGGAACGTTATTTT---ACTCTATCTCTCGCCAAAGATTCCACGG
TCAAAAGGCGTGGAACTGTTTGTAATGCAGG--------------------------------------------TGGGA
CTTTACAGCCTATCAGTTTATCACCAATATTGTTCAGTCATAGGCTCACAGTTCTATTTCCTCTCAAAAAAAGCAAGTGT
CAAAAAACATCTTATATT
>chr4D_1
GTAAATCATGATTCCATAATAAATGCAATAACCAATTCAATTTCATCTGAAAAATGATTCACCACCAGCAAAGATTCCAT
GGGCCAGTGTAAATCGTGGAATCCATTTGCCATCCTTCATGAAAAGAGGTGTCAACCGACTAAAGCTATACCTAGACCTT
TTCAAAATA-TAAACAAAATCTACAAAATTGGTACTACCGTGTATGCCCTCCACCTCTAAATCTTAATCACAGGTGGCTG
CTGGAATCTGTATGGTAATTTTTTTGTTTAATTTTGTTTTTACCAAGCCATGT--------------------------T
AGAAAGGCTAGTGGATGGAGTAAGTGTACATCCTCGAACGATATGCGAACTCACAATTATGCAATTCAGAGTATCTCAGG
AACCAACTGCCACTTATAAAGGACGAGCAAGCATGGACAGTATTGATTGACAAGAACATCCAGGTTAAATTATGCAATCC
TACGGCACTTTGAGTTTATGGAGTAACTTGTGCTGGTGCATAAAACCTAATCTGGTAGCAGGGTGAGATGTCCTCCCTCT
GGCAGCTGGCTGGCTCATGTCACCGGAAACAGCACTGCCTGGCTCAAACATTTGTAGAAATCCATACCTACAGGGAAAAA
CTGGAGAAAACTGAAACTTGACAAAGAACCAACT--------CCTGAAAAATATGTATACTCGG----------------
----------------------------TGGCACCGGTGGATTGATCAGCAAGGGACAAAGGTTGCATTTTGTGTGGAAG
GGGAGAGGCCCCCCAAATTCCCACAGCAACAGCAACACTTTCCAGCCACCAACTGATGCCAGAGTTTTTAAATGCCAGGA
AAAAGGCCAGCAAACGAGGCAGGCTCACACCCAACTAACTCTGTCTCAAATCTCTCGCCTCAGAACATGCAGCAACGCCT
TCCAATCATAAATACACCCCATCCCATCCCC-----TGCCC-TCACAACCGTAATAACCTCC----TCCCCTACAAATAG
CCTCCCAAGAAGCCAACCAAGGCCAGCACAGCACAGCACAGAGCAAT---------AGCAATAGCCATAGCCAGCAGCAA
TGGAGATAGAGTCGGTCAAGTGTGAGTGCTGTGGCCTGAGGGAGGACTGCACCCCGGACTACATTGCGAGCGTGAGAGCC
GGCTTCTACGGCCAGTGGCTGTGCGGGCTGTGCTGCGAGGCCGTCAGGGACGAGGCCGGCAGGAAGAAGCAGGCTCACCC
GGGCGTCGAGGAGGCCGTGCGGGCGCACATGGCCTTCTGCAAGAAGTTCAAGTCCAACCCCGCCGTCCGGGTCGCCGACG
GCATGCGCCAGATGCTCCGGAGGCGGTCCGGTGACTTGTCCAAGCCGCCGGGCTCCTCCTCCTCCAA---CAAGTACGGC
ACTGCGCAGGTCGGAGATGATTCGCCCGTGTCGCTATATTAATTGAGGAGTACACCGTTACCATTCTATGGCTTGTAGAC
CATCTAGTGCTT--TTTTCTCAGGCTCAAATCTCCTGTTTCTTTTGTCATTTTTGGCGTATGTTCTTATTGTGGAAAGAA
CTTGGAATGTACAGAAAGTCATAAATTTCTACGAAATAGATGCTAATAG----TGCTTGGCTTTGAAATGAGACTGTGTT
C-TTTTTGTTCGTTTTAAGAAC-GAAGCAATCATGAGTTGCCAACATATACTACTACTACT---TAGATAGATGTGCTAA
TTGGTTTCTTGTTGCAACCTAACAAAGACAAGGAGGAGGTTAGCATGCATGTGCAAGCAACATTGTTCACACTACTCGCT
GTGTCTGACGTGATTTGCGATGGAGACGCCGCACCAAGAATCAAGGCAA---TCTATTTATCT----ATGTACCGGTGTT
ACCTAAAGCTGGTGGCTGCTGTTGCACCACTATACTG--ACTGTGATCAAGATTATAGTGATAGCTA--AAGTGATGGCA
TTTGGAA---CTCCTTTTTTTCCCCCTTTCCAATGTTCACATTATACTGATAGCTGCTGACCACAGCATGTGCAGTTTGA
TATCAAGATTGTAGAAGTATTGTGATTTCTCATATGAGTGTGTGGTCTAATCAGGAACAGGTTGAGGACACT--------
----------------------ATCAGTTCAACAGTCCTGAAGACAAGGACAGACCATTAGGGTGTATCTATGTATTGCA
AAGCCCATCTTTACAGTTG-------------------------------------------------------------
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--------CTTAGGAAGAAATCTGAGACAGTGCCA-------------------TAGCTATAGAGTGAAACACTGCTTAA
GTGGAGTTGTGATGATGCTATCACTTCTATTCATGACCAAGTTCTACGAACATCGGACAGTGCATAAGACTAGACAGCTT
ATTGTGGACTACTCTTTGGGTTCTAGCACATGGGATGGAACGTTATTTT---ACTCTATCTTTGGCCAAAGATTCCAGGG
TCAAAAGTTGTAGAACTGTTACTAAAATATTTGCTTATGTGCGACGCATAATGTACTGTTTATAAGATATACAAATGGGA
CTTTACAACCTATCAGTTTATCACCAATATTGTTCAGTCATGGGCTCACGGTTCTATTTCCTCTGAAAA-----------
------------------
>chr4B_1
GTAAATCATGATTCCATAATGCAATAAAAAAAA---TCAATTTCATCTGAAAAATGATTCACCACCAGCAAAGATTCCAT
GGGCCAGTGTAAATCGTGGAATCCATTTGCCATCCTTCATGAAAAGAGGTGTCAACCGACTAAAGCTATACCTAAACCTT
TTAAAAAAATTAAATAAAATCTATAAAACTGATACTACCGTGTATGTCCTCCACCTCTAAAACCTAATCACAGGTGGCTG
CTGGAACCTCTATCGTAA-TTTTTTGTTTAATTGTGTTTTTACCAAGCCATGTGCTGAATCTATATGGTAATTTTCAAAT
AGAAAGGCTAGTGGATGGAGTAAATGTACATCCTCGAACGATATGCGAACTCACAATTATGCAATTCAGAGTATCTCAGG
AACCAACTGCTACTTATAAAGGACGAGCAAGCATGGACAGTATTGATTGACAAGAACATCCAGGTTAAATTATGCAATCC
TACGGCACTTTGAGTTTATGGAGTAACTTGTGCTGGTGCATAAAACCTAATCTGGTAGCAGGGTCAGATGTCCTCCCTCT
GGCAGCTGGCTGGCTCATGTCACCAGAAACAGCACTGCCTGGCTCAAACATTTGCAGAAATCCTAAAAAC----------
--------AAATGAGACCAATCCAAGAGCTAACCCTCGTTGACATTTATTTATAGAAGAAACTCCGCGAGCACCACGCGT
TCAAGCTGGGACTTGAACTCGGGTGGGCTGGCACCGGTGGATTGATCAGCAAGGAACAAAGGTTGCATTTTGTGTGGAAG
GGGAGAGGCCCCCCGAATTCCCGCAGCAACAGCAACACTTTCCAGCCACCAACTGATGCCAGAGTTTTTAAATGCCAGGG
AAAAGGCCAGCAAATGAGGCAGGCTCACACCCAACTAACTCTGTCTCAAATCTCTCGCCTCAGAACATGCGGCAACGCCT
TCCAATCATAAATGCACCCCATCCCATCCCCACCCCTGCCCCTCGCAACCGTAATAACCTCCCTCCTCCCCTACAAATAG
CCTC--------CCAACCAAGGCCAGCACAGCACAGCACACCACAGCACGGCACAGAGCAATAGCCATAGCCAGCAGCAA
TGGAGATAGAGTCAGTCAAGTGTGAGTGCTGTGGCCTGAGGGAGGACTGCACCCAGGACTACATTGCGAGCGTGAGAGGC
AGCTTCTACGGCCAGTGGCTGTGCGGGCTGTGCTGCGAGGCCGTCAGGGACGAGGCCGGCAGGAAGAAGCAGGCGCACCC
GGGCGTGGAGGAGGCCGTGAGGGCGCACATGGCCTTCTGCAAGAAGTTCAAGTCCAACCCCGCCGTCCGGGTGGCCGACG
GCATGCGTCAGATGCTCCGGCGGCGGTCCGGCGACTTGTCCAAGCCGCCGGGCTCCTCCTCCTCCTCCAGCAAGTACGGC
ACTGCGCAGGTCGGAGATGATTCATCCGTGTCGCTAT----ATTGAGGAGCACACCATTA--ATTCTATGGCTTGTAGAC
CGTCCTTCTAGTGCTTTTCTCAGGCTTGAATCTCCTGTTTCTTTTGTCATTTTTGGCATATATTCTTATGATGGCAAGAA
TTTAGAATGTACAGAAAGTCGTAAATTTCTTCGAAATGGATGCTAATAGATAGTGCTTGGCTTTGAAATGAGACTGCCTT
C-TTTTTGTTCGTTTTAA---CAGAAGCAATCATGAGTTGCCAACATATACTAATACTACT---TA----GATGAGCTAA
TTGGTTTCTTGTTGCAACCTAACAAAGACAAAGAGGAGGTTAGCATGCATGTGCAAGCAACATTGTTCACACTACTCGCC
GTGTCTGACGTGATTTGCGACGCAGACGCTGCACCAAGAATCAAGGCAAAAATCTATTTATCTATATATGTACCGGTATT
ACCTAAAGCTGGTGGCTGCTGTTGCACTTGCACCACTATACTGTGATCAAGATTATAGTGATAGC--------------A
TTTGGAACTCCTTTTTA-TTTCTCCCTTTCCAATGTTCACATTATAGTGATAGCTGCTGACCACAGCATGTGCACTTTGA
CATCAAAGATTGCAACACTGTGATATCCCAG--ATGGGTGTGTGGTCATATTACGAACAGGGTGAGGACACTAAATCTTC
ATCTAAAACATGGTCACTAACAATCAGTTCAACAGTCCTGAAGATAAGGATAGATCTTTACAGGTTACGTCGCTGTATTG
TACTCCCTCCGTTCCTAAATATTTGTCTTTCTAGCATTTCAAATGGACTACCACATGCGGATGTATGTAGACATATTTTA
AAATGTATATTCACTCATTTGCTCCGTCTGTAGTCAGTTGTTGAAATCTCTAGAAAGACAAATATTTAGGAACGGAGGGA
GTATAATCCTTAGGAAGAAATCAGAGACTACGACAAGCTGATAAGTAATAGTACTAGCTAAAGAGTGGAACACTGCTTAA
GTGGAGTTGTGATGGTGCTA--------------GACCAAGTTCTACGAATATTGGACAGTGCATAAAACTAGACAACTT
ATCGTGGATTACTCTTTGGGTTCTGGCACATGGGATGGAATGTTATTTTACTACTCTATCTTTGGCCAAAGATTCCACGC
TCAAAAGGCGT---------------------------------------------------------------------
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>SNPs
-----------------S--------------------------------------------------------------
--------------------------------------S--------------------------S--S-----------
--S---S-SSS----------------------------------------------S----------------------
-------------------------------------S----S-------------------------------------
----------------------------------------------------------------S---------------
-----------------------------------------------------------S--------------------
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---------S----------------------------------------------------------------------
-----------------------------------SSS--S--------------------S------------------
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---------------------------------------------------------------S----------------
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-----------------------------------S---------S---S------------------------------
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--------------------------------------------S-----------------------------------
S--------------------------------S----------------------------------------------
-------------------S---------------------------S-----------------------------S--
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--S--SS-----------------------------------------S-------------------------------
S--------------------------S----------S-----S---------------------S-----S-------
SS-----------------------------------------------------------SSS------------S---
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--------------------------------------------------------------S-----------------
-------------------------------------------------------------------SS------SS---
---------S-----S-----S-----------S-----S-------S---------------S----------------
--------------------------------------S-----------------------------------------
-------------------------------------------------------S---SS-------------------
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----------------S---------S-----------------------------------------------------
-------------------------------------------------------------S-S----------------
-----------S--------SS---SSS-SS-------------------------------------------------
-------S---------------------------------S-------S--------------S----SSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_864
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--------------------------------------------GCCACCAACTGATGCCAGAA----------------
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>reverse_2666
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-------------------------TGCAGGTGGGACTTTACAGC-----------------------------------
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