>input_sequence_82889
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------------------------------------------------------------ATGGAGAGGAGAGCGGCGAG
GAGAAGCTCCGCCCACCACAGCCGAATGCAGATGCCGCCGGCGCCGGTGGGGCAGAAGCAGCACCAGCAGACGCAGACGC
AGCGCCGCGGGGGGTCGAAGAGCTGCCAGAGAACGCCGCCGCCGCCGGGCTGCTTCACCATCCAGCTGCTCATGGTGTTC
CTCTGGGTGGCCGCGTCGCTCGCCTTCCTGCCGCTCGTGCTGCCGCCGCTACCCCCGCCGCCGCTCTCGCTGCTGCTGCT
GCCCGTGTGCCTGCTCGCCGTCCTCGCCGCGCTGGCCTTCGTCCCGCTCGACGCCCACAGCAACGTCGTCGGCGGCGGCT
CGTCTTGTTTGTAG------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G436800
TTGACTTGTACTTCAAGAAGTTGCTTCAAAGTTTGTCTAAGGGTCGTTGGCGTGTTTGGGCTGAAGAATATAGAGCTCTT
GCTCCTGTTGACACACTGTCCAGAAGCATCCCCATATATTGCAAGAATATCATTCAGCCTAGCCGCGCTTTCCTCATTCG
CCTTGATGAAGATGAGGCTATCATCAGCGAATAGTAGGTGATTCATCCATGGTGATCTGAAGTTCACTCGGATACCCCTG
TCCACAAAGTCCCCGTAGTGCTTCAGAAGTGAGGTAAAACCTTCGGCGCAAAGCAAGAACAAATAATGGGAGATTGGACA
CCCCTGCCGAAGCCCTCTGGATGGGTCGAAATAAGGCTGCAGCTCTCCATTCACACGGACAGAGAACCGAACAGATGTGA
CACACTTCATGATCAGCCTGACCAGATTAGCATTGAACCCCAACTTCAAGAGTATGGCTTCCAGAAAGTGCCATTCGACT
CTATCGTAAGCCTTCATCATGTCAAGTTTGATCGCACCATGCTCTCCACATGCGTCCACTGGCTCCTCCACATACGCTGC
ACCTGCTGCCCCGAGATCTGGACGTCAACAGCCCCGGGCGCACGCGATCTCCGACCCGATCTCGGCGTACGGAGCCACGA
CCCGGTGCGTGTGCTTGCATGGGAACGGGAATACGACTAT----------------------------ACGAGGTAG---
------GGAGCCCGAGTCCAGTCAAAACAT---GCAGCTTAGCCATCACGTTGTTCAACGAACCTGCCCCGAAGCAAGCA
GCCGCCCCACTTTGTTCCTAC----ACTAG---TACTAATAAAGCCGTTGAACAACCACCAGCTCGATCCCCCTTTCTAT
TGCTTGCAGCCTCCTCCTTCCTCCGTCCAGGCCGCGGCT-----------------------------------------
--ACGAGTTCTTCCGACTGGCCGGCCGGAGAGTTTCTCATCTCATCGTCTAATCGTCGGAGAGAGTGGTCCATCAGTT--
--------GCCTTCCCGCGTCTGAATTTCTCGTACAATCCCTGTGGCCTGTGCCTACAAGATGGAGAGGAGAGCGGCGAG
GAGAAGCTCCGCCCACCACAGCCGAATGCAGATGCCGCCGGCGCCGGTGGGGCAGAAGCAGCACCAGCAGACGCAGACGC
AGCGCCGCGGGGGGTCGAAGAGCTGCCAGAGAACGCCGCCGCCGCCGGGCTGCTTCACCATCCAGCTGCTCATGGTGTTC
CTCTGGGTGGCCGCGTCGCTCGCCTTCCTGCCGCTCGTGCTGCCGCCGCTACCCCCGCCGCCGCTCTCGCTGCTGCTGCT
GCCCGTGTGCCTGCTCGCCGTCCTCGCCGCGCTGGCCTTCGTCCCGCTCGACGCCCACAGCAACGTCGTCGGCGGCGGCT
CGTCTTGTTTGTAGAGAGGCTGCATTTT------CTTTTCCGTGTCGGTCAGAGCTAGTTGTTT-CAGATCTAGCCTGTA
GTACAAACTGTGAACCTTTTTTTA------AGATTAGG---ATTAGGATTAATTAACAGAGGACTACTTTTTGGCTTTGT
AATCACTTGAATTCCGGCAATGTCAATTGAGATCTCACGGTATTTATGCTTATCAACTGAAAAGAACTTCCAGGAAGTGG
AATCCATAAATCATTCGTTGAAACAAGAAAGAAAATACGCGTGTCCAATAATAGTATAAGACCATTTTGCAAGCTATGTT
AGACTGCAAACCGGACACCGCATCTGTCGACAGAGAA-GGGACCAGTCCATAAACACGGATATGGGAGCCGGCCATCCAA
AACTAGCCGAATACATCAACCCTCAATTTTTTTTAAAAAAATCTA--ATGCATCTGCACGTTCAAAATAGTTCCATATAT
CTAGTTTTAGTTTGAGATTAGTTAAAAAAATGTTCAAATGCAGCAGTAGTTTTAATTTAAATATTACACTTCAACAATGT
TGTCCTAGTTAAAAAAAACAAACAAGCAAT--------------------GTTGTCCTTGTTAACCGTCCACGGATGCTC
AATCAGATCTATCTTCAGTTATTCATGAGTTGCTCGATGCCGAATTTGTTGATGTATTTCAACAAATTCATCAAATGTAG
CCGGATTTTGATCTTGAAGTTCAATAGGATCATCCATGTTCTCAAATTCAAGACCTACGGCCGCA---------------
TCCATGGTCATGTTGTGCATGATCACACAACATGTCATCACCTCCCACAAGGTCTCTAGATCCCATTGTTTAGCAGGTCT
AAAAACAACTGCAAAACGTACCTGTAGAACTCCAACTGCACTCTCAACATCTTTTCTAGCCGCTTCCTGCTTT-------
---------------GACCAATTGAGTCAGAGATGGTCTTGACAAAGGTAGCTCATGAAGAATAGATACTGACAATCAGA
TAGTAGCCCATGTTGTATGCATGCCCATTGACAGTATAGTGGCAAGGAGG
>chr1B_3
--GACTTGTACTTCAAGAAGTTGCTTCAAAGTTTGTCTAAGGGTCGTTGGCGTGTTTGGGCTGAAGAATATAGAGCTCTT
GCTCCTGTTGACACACTGTCCAGAAGCATCCCCATATATTGCAAGAATATCATTCAGCCTAGCCGCGCTTTCCTCATTCG
CCTTGATGAAGATGAGGCTATCATCAGCAAATAGTAGGTGATTCACCCATGGTGATCTGAAGTTCACTCGGATACCCCTG
TCCACAAAGTCCCCGTAGTGCTTCAGAAGTGAGGTAAAACCTTCGGCGCAAAGCAAGAACAAATAAGGGGAGATTGGACA
CCCCTGCCGACGCCCTCTGGATGGGTCGAAATAAGGCTGCAGCTCTCCATTCACACGGACAGAGAACCGAACAGATGTGA
CACACTTCATGATCAGCCTGACCAGATTAGCATTGAACCCCAGCTTCAAGAGTATGGCTTCCAGAAAGTGCCATTCGACT
CTATCGTAAGCCTTCATCATGTCAAGTTTGATCGCAC-------------------------------------------
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>chr2B_3
--GACTTGTACTTCAAGAAGTTGCTTCAAAGTTTGTATCAGGGTCGTCGGCGTGTTTGGGCTGAAGAATATAGAGCTCTT
GCTCCTGTTGACACACTGTCCAGAAGCATCCCCATATATTGCAAGAATATCATTTAGCCTAGCCGCGCTTTCCTCATTCG
CCTTGATGAAGATGAGGCTATCATCAGCAAATAGTAGGTGATTCACCCATGGTGATTTGAAGTTCACTCGGATACCCCTG
TCCACAAAGTCCCCGTAGTGCTTCAGAAGTGAGGTAAAACCTTCGGCGCAAAGCAAGAACAAATAAGGGGAGATTGGACA
CCCCTGCCGAAGCCCTCTGGATGGATTGAAATAAGGCTGCAGCTCTCCATTCACACGGACAGAGAATCGAACAGATGTGA
CGCACTTCATGATCAACCTGACCAGATTAGCATTGAACCCCAGCTTCAAGAGTATAGCTTCCAGAAAGTGCCATTCGACT
CTATCGTAAGCCTTCATCATGTCAAGTTTGATCGCAC-------------------------------------------
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>chr4D_4
---ACTTGTACTCCAAGAAGTTGCTTCAAAGTTTGTCTAAGGGTCGTCGGCGTGTTTGGGCTAAAGAATATAGAGCTCTT
GCTCCTGTTGACACACTATCCAGAAGCATCCCCATATATTGCAAGGATATCGTTCAGCCTAGCCGCGCTTTCCTCATTCG
CCTTGATGAAGATGAGGCTATCATCAGCGAATAGTAGGTGATTCGCCCATGGTGATCTGAAGTTCACTCGGATACCCCTA
TCCACAAAGTCCCCGTAGTGCTTTAGAAGTGAGGTAAAACCTTCGGCGCAAAGCAAGAACAAATAAGGGGAGATTGGGCA
ACCCTGCCGAAGCCCTCTGGATGGGTTGAAATAAGGTTGCAGCTCTCCATTCACATGGATAGAGAACCGAACAGACGTGA
CGCACTTCATGACCAGCCTGACCAGATTAGCATTGAACCCCAGCTTCAAGAGTATGGCTTCCAGAAAGTGCCATTCGACT
CTATCGTAAGCCTTCATCATGTCAAGTTTGATCGCAC-------------------------------------------
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>chr3A_4
---ACTTGTACACCAAGAAATTGCTTCAAACTTTTTCTAAGAGTCGTCGACGTGTTTGGGTTAAAAAATATGGAGCTCTT
GCTCCTGTTGACACATTGTCCAGAAGCATCCCCATATATTGCAAGGATATCATTCAGCCTGATCGCACTTTCCTCATTCG
CCTTGATGAAAATGAGGCTATCATTAGCGAATAGTAGGTGATTCACCCATGGTGATCTGAAGTTCACTCGGATACCCCTA
TCAACAAAGTTCCTGTAGTGCTTCAGGAGTGAGGTAAAGCCTTCGGCACAAAGCAAAAACAAGTAAGGGGAGATTGGACA
CCCCTGCCGAAGCCCTCTGGATGGGTTGAAATAAGGTTGCAGCTTTCCGTTCACACGGACAGAGAACTTGAAAAATGTGA
CACACTTCATGATCAACCTGACCAGATTGGCATTGAATCCAAGCTTCAAGAGTATGGCTTCCAGGAAATGCCATTGGACT
CTATCGTAAGCCTTCATCATGTCAAGTTTGACCGCAC-------------------------------------------
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>chr4A_4
---ACTTGGACTCCAAGATGTTGCGTCAATCTTTGTCTAAGAGCCGTCGGCGTGTTTGGGCTGAAGAATATAGAGCTCTT
ACTCCTGTTGACACACTATCCAGAAGCATCCCCATATATTGCAAGGATATCATTCAGCCTAGCCACGCTCTCCTCATTCG
CCTTGATGAAGATGAGGCTATCATCAGCGAATAGCAGGTGATTCACCCATGGTGATCTGAAGTTCACTCGGATACCCCTG
TCAACAGAGTCCCCGTAGTGTTTCAGAAGTGAGGTAAAACCTTCAGCGCAGAGCAAGAACAAATAAGGGGAGATTGGGCA
CCCCTGCCGAAGCCCTCTGGATGGGTTGAAATAAGGTTGCAGTTCTCCATTCACGCGTACAGAGAACCTAACAGACGTGA
CGCACTTCATGATCAGCCTGAGCAGATTAGCATTGAAACCCAGCTTCAAGAGCATGGCTTCCAGAAAGTGCCATTCGACT
CTATCGTAAGCCTTCATCATGTCAAGTTTGATCGCAC-------------------------------------------
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>chr7A_4
---ACTTGTACACCAAGGAGTTGCTTCAAACTTTACATAAGGGCCGCCGGAGTGTTTGGGCTGAAAAAGATGGAGCTCTT
GCTCCTGTTAACACACTGTCCAGTTGCATCGCTATAGATTTCAAGGATCTCATTCAGCCTAGTCGCACTTTCCACATTCG
CCTTGATAAAAATAAGGCGATCGTCAGCGAAGAAGAGATGATTCACCCATCGTGCTCTGAAGTTCACTCTAATACCTCTA
TCAACAAAGTTATCATAGTGCTTCAAGAGCGAGGTGAAGCCTTCGGCGCAAAGTAGAAACAAGTAGGGGGAAACTGGGCA
CCCCTGCCGAAGCCCTCTGGATGGGTTGAAGAAAGGCTGCAGCTCTCCATTTACACGGACAAAGAACCGAACCGATGTGA
CACACTTCATGATCAACCTGACCAGGTTAGCATTGAATCCAAGCTTCAAGAGTATGGCTTCCAGAAAGTGCCATTCCACC
CTATTGTAAGCCTTCATCATGTCAAGTTTGACCGCAC-------------------------------------------
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>chr5A_4
---ACTTGTACACCAAGGAGTTGCTTCAAAGCCTGCCAAACATCAGCAGGTGTATTAGGACTGAAAAAGATGGAGCTCTT
GCTCCTGTTTACACTCTGTCCAGTCGCATCACCATATATTTGTAAGTTCTTGTTCAGCCTAGTTGCACTTTCCACGTTCA
CCTTGATGAAAATGAGACTATCATCAGCGAATAAAAGATGATTCACCCAAGGTGCTCTGAAATTCATTCTAAGGCCTCTA
TCAACAGAGCTACCATAGTGCTTCAAGAGCGAGGTGAGGCCTTCGGCACATAGCAGGAACAGATAGGGGGATACTGGGCA
CCCCTGCCGAAGACCTCTGGAAGGGTTGAAAAAAGGCTACAGCTCTCCATTCACATGAACAGAGAACCGAACAGATGTGA
CACACTTCATGATCAATCTTACCAGATTAGCATTGAATCCCAGTTTCAAGAGCACAGCTTCCAAGAAATGCCACTCTACT
CTGTCATAAGCCTTCATCATGTCAAGTTT---------------------------------------------------
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>chr3D_517
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------------------------------------CCATGCTCCCCACATGCATCCACTGGCTCCTCCACATACGCTGC
ACCTGCTGCCCCGAGATCTGGACGTCAACAGCCCCGGCCGCACGCGATCTCCGACCCGATCTCGCCGTACGGAGCCGCGA
CCCGGTGCGTGTGCTTGCATGGGAACGGGGGTACGATCATCCGAGGTTGGGCGTGGCTGGGGGTGGAGACCAGGGAG---
------GGAGCCCGAGTCCAGTCAAAACATGCAGCAGCTTAGCCATCACGTTGTTCAACGAACCTGCCCCGAAGCAAGCA
GCCGCCCCACTTTGATCCTACTCCTACTAG---TACTAATAAAGCCGTTGAACAACCACCAGCTCGATCCCCCCTTCTAT
TGCTCGCAGCCTCCTTCCTCTCTCAGACGCACAATCCATCGCAGCCTCCTCCCTCCTCCGCTGAAGCCGTGCCGCGGCTA
CGACGAGCTCGTCCGACTGGCCGGCCGGAGAGTCCCTCGTCGCATAGTCTAACCATCGGAGGAAGTGGTCCGTCAGTT--
--------G---------GTCTGAGCTTCTCATACGATCCCTGTGCCTACAAG------GATGGAGAGGAGAGCGGCGAG
GGGCACCTCTGATCACCGTAGGCGAATGCAGATGCCGCCGGCGCCGGTGGGGCAGAAGCAGCA---------GCAGCCGC
AGCGCCGCGGGGGGCCGAAGAGCTGCCAGAGAACGCCGCCGCCGCCGGGCTGCTTCACCATCCAGCTGCTCATGGTGTTC
CTCTGGGTGGCCGCGTCGCTCGCCTTCCTGCCCCTCGTGCTCCCGCCGCTGCCCCCGCCGCCGCTCTCGCTGCTGCTCGT
GCCCGTCTGCCTGCTCGCCGTCCTCGCCGCGCTGGCCTTCGTCCCGCTCGACGCCCACAACAACGTCGTCGTCGGCGGCT
CGTCTTGTTTGTAGGGAGGCTGCATTTTTT-TTTCTTTTCCGTGTCGGTCAGAGCTGGCTGTTACCAGATCTAGCCTGTA
GTACAAACTGTGAACCTTTTTTTA------AGATTAGAATTATTAGGATTAATTAAGAGAGGACTACTTTTTGACTTTGT
AATCACTTGAACTCCGGCAATGTCAATTGAGACCTCACGGTATTTATGCTTATCAA--------------------GTCG
AATCCATAAATCATTCGTTGAAACAAGAAAGAAAATACTCCGTGTGTCCAATAATATAAGACCATTTTGTAAGCTATGTT
AGAATGCAAACCGGACACCGCATCCGTTGACAGAGAG-AGGATCAGTTCACGGACATGGATGTGGGAGCCGGCCATCCAA
AACTACCCGAATACATCGGCCCCCAACTTTTTAAAAAAAAAATCTACATACATCCGCACGTTCAAAATAGCCGTATATC-
-----------------TTAGCTAACAAAATGTTCAAATGCAACAGTAGTTCTAATTTAAATATTACACCTCAACAATGT
TGTCCT----------------------------------------------------CTTTAACCGTCCAGAGATGCTT
AATCAGATCTATCTTCAGTTATTCATGGGTTGCTCGATCCCGAATTTGTTGATGTATTTCAATAAATTCATCAAATGTGG
CCGGATTTTGATCTAGAAGTTCAATAGGATCATCCATGTTCTCAAATTCAAGACCTACGGCGGCA---------------
TCCACGGTCATGTTGTGTATGATCACACAACATGTCATCACCTCCCACAAGGTCTTTGGATCCCATTGTTTAGCAGGTCC
AAAAACAATTACAAAACGTACCTGCAGAACTCCAACTGCACTCTCAACATCCTTTCTAGCCGCTTCTTGCTTTTGCGAAA
AGTGGGACTTTTTCTGACCAATTGGGTCAGAGATGGTCTTGACAAAGGTAGCTCACGAAGAATAGATACTGTCAACCAGA
TAGTAGCCCATGTTGTATTCATGCCCATTGACAGTATAGTGGCAAGGAGG
>chr3A_571
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----------CCGAGATCTCCACGTCGCCGGCCCCGGGCGCACGCGATCTCCGACCCGATCTCGCCGTACGGAGCCACGA
CCCGG--CGTGTGCTTGCATGGGAACGGAGATGCGACTAT----------------------------ACGAGGTTGGGC
GTGGCTGGAGCCCGAGTCCAGTCAAAACATGCAGCAA---AGCCATCACGTTGTTCAACGAACCTGCCCCGAAGCAAGCA
GCCGCCCCACTTTGATCCTGCTCCTACTCCTACTACTAATAAAGCCGTTGAACCACCACCAGCTCGATCCCCCCTTCTAT
TGCGTGCAGCCTCCTTCCTCTTCCAGAAGCACAATCCATCGCAGCCTCCCCCCTCCTCCGCTGAAGCCTCATACCTCCCC
CGACGAGCTCGTCCGACTGGCCGGCCGGAGAGTCTCTCGT--------------------------GGTCCGTCAGTTGC
CTTCGCGGG---------GTCTGAACTTCACGTACGATCCCTGCGCCTACAAG------GATGGAGAGGAGAGCGGCGAG
GGGCACCTCTGATCACCGTCGGCGAATGCAGATGCCGCCGGCGCAGGTGGAGCAGA------------------AGCCGC
AGCGCCGCGGGGGGCCGAAGAGCTGCCAGAGAACGCCGCCGCCGCCGGGCTGCTTCACCATCCAGCTGCTCATGGTGTTC
CTCTGGGTGGCCGCGTCGCTCGCCTTCCTGCCGCTCGTGCTGCCGCCGCTGCCCCCGCCGCCGCTCTCGCTGCTGCTCGT
GCCCGTTTGCCTGCTCGCCGTCCTCGCCGCGCTCGCCTTCGTCCCGCTGGACGCCCACAACAACGTCGTCGGCGGCGGCT
CGTCTTGTTTGTAGAGAGGCTGCATTTTTTCTTTCTTTTCCGTGTCGGTCAGAGCTAGCTGTTT-CAGATCTAGCCTGTA
GTACAAACTGTGAACCTTTTTTTCTAGATTAGATTAGAA--ATTAGGATTGATTAACAGAGGACTACTTTTTGGCTTTGT
AATCACTTGAATTCCGGCAATGTCAATTGAGATCTCACGGTATTTATGCTTATCAA--------------------GTGG
AATCCATAAATCATTTGTTGAATAAAGAAAGAAACTACTCCGCGTGTCCCATAATAAAAGACCATTTTGCAAGCTATGTT
AGACTGCAAACGGAACACCGCATCCGTTGACAGACAGGGACAGGTTTG--CGGGCACGGATGTAGGAGCCGGCCATCCAA
GACTAACC------------------------------------------------------------------------
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>chr4A_1651
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------CAAACCGCACACCGCATCCGTCCGCGGACAGGGGGACCAGTCCACGGACAAGGATGCGGGAGCCAGCCATCCAA
AGCTAGCCGCATACATCCGCCACCCAGTTTTTTTTAAG--------------TCCACACGCTCAAACTAGCCGCAAATC-
-------TAGTTCCAGTTTAGATAAAAAAATGTTCAAATGCAGCAGTAGTTCTAATTTAAATATTACAATCCAACAAAGT
ATTCAAATTGTAATGGTTCAAACTTGAATTTAACTAGCACGTATGTACTAGTTGTCCCCTTTGACCTCCCAAAGATCCTC
AATCAAATCTTCCTTCAGTTGCTCATGAGTTGCTCGATAAAGAATTTGTTGATGCATTTGAACAAACTCATCAAATGTGG
CCGGATTCTGGTCCGAAAGTTCGATAGGATCACCCATGTTCTCAAATTCAAGAGCTATGGCAGCATCCTCACCCTCATCC
TCCACAATCATGTTGTGCATGATCACACAACATGTCATCACCTCCCACAAGGTCTCCGGATCCCATTGTTTTGCAGGTCC
ACGAACAACTGCAAAACGTGCTTGCAGAACTCCAAATGCCCTCTCAACATCCTTTCTAGCTGCTTCTTGTTTT-------
---------------G----------------------------------------------------------------
--------------------------------------------------
>SNPs
SS------------------------------------------------------------------------------
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---------------------------------------------S----------------------------------
------------------------------------------------------------------S-------------
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------------------------------------------S-------------------------------------
--------------------------------------------S--------S--------------------------
----------------------------------------------------------------S---------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------S----------------------------------------------------------S------
---------------S-S--S---SSS-SSS-SSSSSS------------------------------------------
-------S--S----------------------S----S--S---S------S-S------SS--------S--------
---------SSSSSSSSS-------S---------S---------S-SSSSSSSSSSSS---------------------
-S-S-S---S-SS----SS--S-----------------------------------------SSSSSSSSS----S---
--------------S-----------------------------------------------------------------
--------------------------------------------------S--------------------------SS-
------S----------------------------------------------------S--------------------
----------------------------------------------------------S---------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------SSSSSSSSSSSSSSSSSSSS----
--------------------------------------S-SSSSSSSSS----S--------------------------
------------------------S-----------S-------------SSS--------S------------------
-----------------SS---S---S--------------SSSS----S----S---------------SSS-----SS
SSSSSSS-----SS--S----S-----------------------------S----------------------------
-------S-SS--SSSSS-----SS-S-S----------------------------SSS-----------SS-------
--------------------------------------S---------------------------------------S-
--------------S----------------------------------------------S------------------
----S----------------------------------------------------S---------------------S
------------------------S--------------------------S--------------S-------------
------------------------S------------------------------S---------------S---S----
------------------S-------------------------------
>forward_1055
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---------------------------------------------------------------------------TGGTC
CATCAGTTGCCTTCC-----------------------------------------------------------------
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>reverse_2222
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-------------------------------------------------------------CGCATCCATGGTCATGTTG
T-------------------------------------------------------------------------------
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