>input_sequence_82887
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----------------------------------------------------ATGAGCAAGTGGTGGTGCATCGCCTCCC
TCGTACTGTGCCTCGCCGTGGTGGCGGCGGGCAGGGGTATGCCTGCCGGCGACGACTGCGATATTGTCGTTAATGCGGCC
GGTCGTAACAATCAAGACGGTGATGGTTTCGATGAAGCCAAGACTGCCTTTGCTGGGAGCACTGGTGGTGACGGCGGGCT
CTTCGGTGGTGCCATCAACGGTGGCCCGCTCGGCGGGGGCATCGCCGGCTTTGGCCCTCACGGCGGGTTTGGGGCTGGCG
CCGGGCCGTTCGGTGGTTTCGGCGGCGGCTTCGGCGCTGGTAGCGGAGGTGGAGGAGGGGGAGGCGGA---GGCGGCGTG
ATACCTTGA-----------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G533000
ACGGGACGTGGAAGATGCGAGGATCATGTCGGCGAATGAGACCCTCTATGATGAGCATGTTCAGAAGTGGCTTGCGGACA
AGAAGATGAAGATCAACGACCACAGGAAGTATGAGGCGGCGAGGGCGGCTGCGACCCAGATGCAGGCGGAGCAGGTAGCC
CGGATGCAGGCGGAGGAGGTTGCCCGGATGCACGCAAAGTAGGACAAGCAGGATGCGTTCCGCTCGGAGCAGGCGCCTAG
CCAGTGATCCAAGGCCATCCGGCATGCTCAGACATTGATTTCATTTTACCATGTCCGATTTGTCGAACTATGATTTGCTT
TGCTTTGTTTCGAACTTTGGCATTCAGACAGTTTGTACCACATGGTCAACGTGCATGGCTTGCATAGACTTGAGGATCTG
AATTTGTGGTATGTGAATGTGCGGCGCAACATTTGAGGGGTGCCCGGTCAGTGCCCGCGGGCGTGTCCGGGCTAGGTTGC
TAATGTGGATGGTCTGCATGTGAAGAGAATTAGCTTAGTAGGGATCAACTATTTAGGTATTATAGATTCGAGTGGCAGAT
GGAGAGTGCCAAGTCAAGAAGTTCATTGATTGACAGTGTATATAGCAGGAGTTCATGAAAAGAAATCATACTAGAAACGT
CAGAAATGACAAGCATGCAACCGAACTGATCTGGAGCCAGCACGGAGTCATCTCTGGTGACAATCTCTTTTGGCTGTGAA
AGCTAACACTCAGTAAAAATCGTGTCAGTACTTTATTTCCGAGTAGTGCGCGCTACAGTACCAGATCACCAGCGTTAGAT
CGCAATAACTTCTCATGGACCGACTTCTTCATCTCCGAGTTATTGCGCCATGCATGGCAACAACCACCCGCTTGCCGGCT
GCCACCTTCCATTTAATTACTGTCACGCGCTCGCACCTGT--------CCATCTCGTCCTCCTCCTCCCTTTAAACCCCC
CTGCCACCGCGTTACTCGGCTCACACACCTCTCTGAGACCAACC----AGCCATGAGCAAGTGGTGGTGCATCGCCTCCC
TCGTACTGTGCCTCGCCGTGGTGGCGGCGGGCAGGGGTATGCCTGCCGGCGACGACTGCGATATTGTCGTTAATGCGGCC
GGTCGTAACAATCAAGACGGTGATGGTTTCGATGAAGCCAAGACTGCCTTTGCTGGGAGCACTGGTGGTGACGGCGGGCT
CTTCGGTGGTGCCATCAACGGTGGCCCGCTCGGCGGGGGCATCGCCGGCTTTGGCCCTCACGGCGGGTTTGGGGCTGGCG
CCGGGCCGTTCGGTGGTTTCGGCGGCGGCTTCGGCGCTGGTAGCGGAGGTGGAGGAGGGGGAGGCGGA---GGCGGCGTG
ATACCTTGAGGTGGCCGGTACACGAGCGCGTATGTGAACGTCGTAGTAGCTGAAT----GTGTGTCCCTGCTTTCAATTA
CATGTATCTGTTAGTGTAATAAGAAGTCCTTGGATTAGCTGCGTGAGCATGCATGTATGGCTCGTACGTGTCACAAAGTC
ATTGGCCACAGCGTGTGCATATCTGAGGGCATGTACAATAGTTCTATCTTAACAATGTCACGTAGGATAAATGATAAGGT
GGAGGAGAGAGAAATCAAAAAAAAAAGGTTTGTCTTCTCTTATTTAAGATAAGACAAAAGATGATCTCTTAGCATAATAT
GTCTCACCATATTTTTAGGAATAGCTAGTTATTGAAGATAAGGCTAAGAGATGACCGATTGTAGACACGTTTTTTTATCA
TCTCTAAATTACATGCAAAACTTAAGATAAGACTATCTTATCAACCATTGTACATGCCCTAATGAAAGCAGTGGTGTGTG
TGTCTTGGTCTGAGCATGGATGCATGGAGTTAGCCCTGTTGCGGTGTTTGTATTATTGAATTCATATTCCAGCCAACTCA
TTCAAAAGTCTGAACTGATGAAGAGAGATGGGCAATATATTTCAATACCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCCTTAGATGTGAGATCGATG
TAGGTCGCATAATCGTTTTATTTAATATACTGCGTTGGTAAGGTCTTGAACTCAAGACCTGTTGACTCGGATACCATGTA
AAGTTGCGAGAAGCATATGTCTCGCAGGGACGTGTTACGTGTTTATATATGCAAAAGGATTACAGAGTTAGTTGTCAGGT
AGTTGCTAGATTGATCTCCAAGTCATAATCTATTTAAGAGATGAGATCATCCG
>chr3B_713
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------------------------------------------------------------------------GCTGTCAA
AACTAACACTGAGTAAAA-TCGTCTCAGCACTTTATTTCTGACGAGTGTA-GCTACAGTACAAGATACCCTGCGTC-GAT
CGCAATAACTTCTCATGGACCTACTTCTTCATCTCCGAGTTATTGCGCCATGCATGGCAACAACCACCCGCTTGCCGGCT
GCCAAA----ATTTAATTACTGTCACGCGCTCGCACCTGCCCATCTGGCCATCTCGTCCTCCTCCTCCCTTTAAACCCCC
CTGCCACTGCGTTACTCACCTCAGCCACCTCGCAGAGACAAACCCAAGAGCCATGAGCAAGTGGTGGTGCATCGCCTCCC
TCCTGCTGTGCCTCGCCGTGGCGGTGGCCGGCAGGGGCATGCCTGCCGGGGACGACTGCGACACCGTTGCTCTTGCTGCC
GGTCGCAACAACCAAGACGGTGCTGGTTTCGGCGAAGCCAAGACCGCCTTTGCTGGGAGCAACGGTGGTGACGGCGGCCT
CTTCGGCGGTGCCGTCAACGGTGGCCCTCTCGGCGGGGGCGTCGCTGGCTTTGGTCCGCACGGCGGGTTTGGTGCCGGCG
CTGGGCCCTTCGGTGGGTTTGGCGGCGGCTTCGGCGCTGGTGGCGGAGGTGGAGGAGGGGGAGGCGGT------GGCGTG
ATACCTTGAGGTGGCCGGGATACGAGCGCGTTTGTGAACGTGGTAGTAGCTGTACGTACGTGTGTCCCTGCTTTCATTTA
CATGCATCTGTTAGTGTGATAAGAAGTCCTTTGATTAGCTGCGTGAGCATGCATGTGTGGCTCGTACGTGTCATGATGTC
ATTGGCCTCCGGGTGTGCGTATCTGA------------------------------------------------------
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>chr3D_815
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--------------ATGGACCTACTTCTTCATCTGCGAGTTATTGCGCCATGCATGGCAACAACTACCCGCTTGCCGGCT
GCCACC----ATTTAATTACTGTCACGCGCTCGCACCTGCCCATCT--------CGTCGTCGTCCTCTCTTTAAACCCCC
CTGCCACTGCGTTACTCGCCTCATCCAACTCTCTGAGACCAACC----AGCCATGAGCAAGTGGTGGTGCATCGCCTCCC
TCCTGCTGTGCCTCGCGGTGGCGGTGGCGGGCAGGGGCATGCCTGCTCGCGACGACTGCGATACTGTTGCTCTTGCTGCC
GGTCGCAACGGCCAAGACGGTTCTGGTTTCGGTGAAACCAAGACCGCCTTTGCTGGGAGCAATGGTGGTGACGGCGGGCT
CTTCGGCGGTGCCGTCAACGGTGGCCCTCTCGGCGGGGGCATCGCCGGCTTTGGCCCGCACGGCGGCTTTGGTGCCGGTG
CCGGGCCGTTCGGTGGTTTCGGCGGTGGCTTCGGTGCTGGTGGTGGAGGTGGAGGAGGGGGAGGCGGCGGCGGCGGCGTG
ATACCTTGAGGTGGCCGGGACACGAGCGCGTATGTAAACGTGGTAGTAGCTGT----ACGTGTGTCCCTGATTTCATTTA
CACGCATCTGTTAGTGTAATAAGAAGTCCTTTGATTAGCTGCGTGAGCATGCATGTATGAGTCATACGTGTCATCATGTC
ATTAGCCTCATCGTGTTCGTATCTGA------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--
-S--------S-------S----S----S----------S--SS----SSS----------S----SS--S----SS---
---------------------S----------------------------------------------------------
------SSSS-----------------------------S----------------------------------------
-------S----------S----SS-------------------------------------------------------
--S-S----------------S--S------------S-------------------------S---S-S-SS---S---
-----S-----S----------S--------S------------S----------------S------------------
------S------S-------------S-----------------------------S--------------S--S----
-----------------------------------------S-------------------------S------------
------------------S----------------------S----------S-S---------------------S---
----S--------------------------S-----------------------------------------SS-S---
-------S----------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_574
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--------------------------------------------------------------------------GCAGAT
GGAGAGTGCCAAGT------------------------------------------------------------------
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>reverse_1857
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----------------TGGATGCATGGAGTTAGCCC--------------------------------------------
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