>input_sequence_82882
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-------------------------------ATGAAGAAGGGGGGTCTGCTGCGGTGCGTGTCGACGGGGGCGTGCAGGG
TGGCGCCGGGGGCCGTGGCGGAGATGGCCATCTCGCCGA---CGGCGTCGGGGAAGGTGCCGGCGGGGCACGTGCCGGTG
GAGGTGGGCGCGGAGGGGGAGGAGACGGAGCGCTTCCTCGTGCCGGCCGAGCTGCTGGGCCGCCCTCCCATCGCCGAGCT
GCTCCGCCGGGCCGCGCAGGAGTACGGCTACGCGCGACGCGGCCCGCTCCGCATCCCCTGCCCCGTCGCCGCCTTCCGCC
GTCTCCTCAGCGCGCTCGCCGGCGGGGACAGGGGCCACACGCCCGTCTACTACGCCGTCGTCGTCTGA------------
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>chr2D_1_TraesCS2D01G415500
ATGCGATCCACGCGCCATGTCTGGCCCGCACACTGCACCACCCTACTGTTACTGTACCCGCCGGGCCGAGGCCGCAACCC
GCGACCCCCTGCGAGCGAGCGCGCGCGCGCAGCTTCCTCTCCTCTCCCCGGCGACGGATCGGTC-------GGTCGGGTC
GCGCGCTGGACCC----------GGCGGACGGGGTGAGCAGTGGTGGAACGGGCGGACAGCGACGGGTACCGTACGTCGC
GGGCCCCCACCATGTGCGGCGTCGCCCTCCCCGTTCCGTGGTTACGGAACCGTACAAGGGCGGGTACGGAAGGGGCGACA
CCCGCGGGCCCCGCCTTCACGTGCCGTCGCCCTCGCCGATCCCATTCCGGCGACGCCCGTTCGTACGCCCGCCGGCCCGC
AAGTGGAGTGGCGGACGCCCGCCCGACCCCCGGCACGCCACGTTCGCGCCTGTCCTCCTGTTCCGCCATGAGTGGATTTC
CCCCCCTCA-CCCTACCCATGGTCCATCAATCTTTCCATGGTGGAGTTAATCCGGCTGACACCGATTCACGAAGAGGGAA
AAGACGGGTAGTAAAGCGGTAGGCTCGACGTGTCGAGCAATGGTTCGCCTCGCCTCGCCGCGCCGTCCAGAGCGCGCACG
CGCGGCGACATGGGTGCGCTGCGCAGCCGATCCCGGCACCCCGTCCCACACAGCTCGAG------CCCGTCCCACTCTCT
------CCTCGCACGGCAAGTACTCTCCGTGGTCCTATTCGTACGCCACGCCCCGTTCGTGTCGCCGACAAGCGGGCCCG
-----------------GCTGTCAGCGTCGGTGACTCAGAGCGCCCTCGCGCCCGAGGCACGCGCGCGGGCGCTATATAG
CGACGCCTGCGCCACCCGCCACCCGCCCATCGCTACTCCCTACACTGTGTCTGCTGTGCTAGGCTAGCTCATTCACTGCG
CGCGGCCGACCTCGCCTCGGTATCT----------CCATCCTCCTCCATACGCCACACCTTCGTGGAAGGGGAAGGCTCC
GAGCCGTGTGAG-AGA-------------CGATGAAGAAGGGGGGTCTGCTGCGGTGCGTGTCGACGGGGGCGTGCAGGG
TGGCGCCGGGGGCCGTGGCGGAGATGGCCATCTCGCCGA---CGGCGTCGGGGAAGGTGCCGGCGGGGCACGTGCCGGTG
GAGGTGGGCGCGGAGGGGGAGGAGACGGAGCGCTTCCTCGTGCCGGCCGAGCTGCTGGGCCGCCCTCCCATCGCCGAGCT
GCTCCGCCGGGCCGCGCAGGAGTACGGCTACGCGCGACGCGGCCCGCTCCGCATCCCCTGCCCCGTCGCCGCCTTCCGCC
GTCTCCTCAGCGCGCTCGCCGGCGGGGACAGGGGCCACACGCCCGTCTACTACGCCGTCGTCGTCTGAATCTCATCGACG
------------AG------------CGAGCGACCTCGTAGTCGCTATAGCTTAATTTTAGCGTGATCTTGTTCCGTTTC
TTGAGGGGTGGTGGCCGGTGCAGGGTTGTGTGCATGTGTTTGTGCTGTTCGGTGGTTG--TGTGCTTGCCTTCTCGATCG
AGGGCTGAGGCTTCTAGCTAGACTCCGTTTGGGACTC-GTTCTTCTTCAGTTCTTGGTACTTTTCCTCTCTCTTTTTCTG
GGAAATAATATGTATGTAAATTTGTACATCCAGATCTATGATGAGATGCTACTGAATTCTACGAACTAGTACGTGCAAAT
CTTCACCTCCCTGTTCGTTCAGTCTCTTTCTGTTACACCTGTGTTCTTCAGTGGTGTTCTTCATGCGGCTATAACTAATT
TCCTCGTGTTAGTTGAGAACTTTTACACCGATACATACTTAGAT------CAGACGCAGTCCAGATGATATGCATGGCCC
AAAGAAGTCT-----AACCCTTCGCTTATCTGCTACTTTGTCTTGTGTGCCAACTTT-TAGGGGACTGTCTTGGGCCTCG
ATAACCGTATATATAC----ACGTCCTGTGTGATTTTTCACGATACCCATCACAGAATGCATATCTACGCAAACAAAAGA
AAAGG-AAACAAATCTTCTTTTTCTTATGGTATAGGTTTCCTTTTGCTAGATATTTTCTCCTCCGTCCGTCCTTCCATTT
GGGCCACTCTCTGCCGTGCATGTAGCTCAGTCTAGT-------------CTAGCTAGTCTCAACAACTCACCCCAAGGTC
CAAGGACGACGTAAAGAAAGAGCCAGCAAAGAATTTAAGGAGCGCACGCACTATTTTTTAAGCCAGGCATGGAAATGAAG
GCCTCTGCTTTCTGATGGTACGGGGGAATTCGATGCTCGCCCAGCGGCTTTAATCAAAAGA--AAAAGGACCAGCAATCA
GCATCAAAGTATATTATTTTTCTAG-AAAAGGTCACGGAGTATATTTGTTTTT-CCAGGAAGAAAAGATCAGCAAGTGTA
TGGTCGATC
>chr2B_1
ATGCGATGCACGCGCCATGTCTGGTCCGCACACTGCACCACTCTACTGTTACTGTACCCGCCGGGCGGAGGCCGCAACCC
CGCAACGCACT-----------------GCAGCTTCCCCTCC-----CCGGCGACGGATCGGTC-------GGTCGGGTC
GCGCGCTGGACCC----------GG----CGGGGTGAGCAGTGGTGGAACGGGCGGACAGCGACGGGTACCGTACGGCGC
GGGCCCCCACCATGTGCGGCGTCGCCCTCCCCATTCCGTGGTTACGGAACCGTACAAGGGCGGGTACGGAAGGGGCGACA
CCCGCGGGCCCCGCCTTCACGTGCCGTCGCCCTCGCCGATCCCATTCCGGCGACGTCCGCTCGTACGCCCGCCGGCCCAC
AAGTGGAGTGGCGGACGCCCG----ACGCCCGGCACGCCACGTTCGCGCCTGTCCTCCTGTTCCGCCATGAGTGGATCTC
TTTTCCTT-GCCCCACCCATGGTCCATCAATCTTTCCATGGCGGAGTTAATCCGGCTGACGCCGATTCACGAAGAGGGAA
AAGACGGGTAGTAAAGCCGTAGGCTTGACGTGTCGAGCAATGGTTCGCCT----------CGCCGTCCCGAGCGCGCACG
CGCGGCGACATGGGTGCGCCGCGCAGCCGATCCCGGCACCC-GTCCCACTCAGCTCGAGCTCGACCCCGTCCCACTCTCT
------CCTCGCACGGCAAGTACTCTCCGTGGTCCTATTCGTACGCTTCGCCCCGTCCGTGTCGCCGCCACGCGGGCCCG
TGGGGCTCCCGGCCCCGGCTGTCAGCGTTGGTGGCGCGGAGCGCTCTTGCGCCCGAGGCACGCGCGCGGGCGCTATATAG
CGACGCCTGCGC-------CACCAGCCCATCGCTACTCCCGACACTGTGTCTGCTGTGCTAGGCTAGCCCATTCACTGCG
CGCGGCCGACCTCGCCTCGGTATCT----------CCATCCTCCTCCATACGCCACACCTTCGTGGAAGGGGAAGGCTCC
GAGCCGTGTGAGAAGA-------------CGATGAAGAAGGGGGGGCTGCTGCGGTGCGTGTCGACGGGGGCGTGCAGGG
TGGCGCCGGGGGCCGTGGCGGAGATGGCCATCTCGCCGT---CGGCGTCGGGGAAGGTGCCGGCGGGGCACGTGCCGGTG
GAGGTGGGCGCGGAAGGGGAGGAGACGGAGCGCTTCCTCGTGCCGGCCGAGCTGCTGGGCCGTCCGCCCATCGCCGAGCT
GCTCCGCCGGGCCGCGCAGGAGTACGGCTACGCACGACGCGGCCCGCTCCGCATCCCCTGCCCCGTCGCCGCCTTCCGCC
GCCTCCTCGGCGCGCTCGCCGGCGGGGACAGGGGCCACACGCCCGTCTACTACGCCGTCGTCGTCTGA---TCATCGACG
AGTGAGCGAGGAAG------------CGAGCGACCTCGTAGCCGTAATAGCTTAATTTTAGCGTGATCTTGTTCCGTTTC
TTGAGGGGTGGTGGCCGGTGCAGGGTTGTGTGCATGTGTTTGTGCTGTTCGGTGGTTG--TGCTTGTCTCTCGACGG--G
AGGGCTGAGGCTTCTAGCTCGACTCCATTTGGGACTCGGTTCTTCTTCAGTTCTTGGTACTTTTCCTCTCT--TTTTCTG
GGAAATAATATGTATGTAAATTTGTACATCCAGATCTATGATGAGATGCTACTGAATTCTATGAACTAGTACGTGCAAAT
CTTCACCTTCCTGTTCGTTCAGTCTCTTTCTGTTACACCTGTGTTCTTCAGTGGTGTTCTTCATGCGGCTATAACTAATT
TCTTCGTGTTAGTTGAGAACTTCTACACCGATACATACTTAGATCAGACGCAGACGCAGTCCAGATGATATGCATGGCCC
AAAGATGTCTACTCTAACCCTTCGCTTATCTGCAACTTTGTCTTGTGTGCCAACTTT-TAGGGGACTGTCTTGGGCCTCG
ATAACCGTATACATACATACACGTCCTGTGTGATTTTTCACGATACCCATCACAGAATGCGTATCTATGTT---------
---------------TTCTTTTTCTTATGGTATAGGTTTCCTTTTGCTAGATATTTTCTCCTCCGTCCGTCCTTCCATTT
GGGCCACTCTCTGCCGTGCATGTAGCTCAGTCCAGT-------------CTAGCTAGTCTCAACAACTCTCCCCAAGGTC
CAAGGACGACGTAAAGAAAGAGCCAGCAAAGAATTTAAGGAGCGCACGCACTATTTTTTAAGCCAGGCATGGAAATGAAG
GCCTCTGCTTTCTGATGGTACTGGAGAATGCGATGCTCGCCCAGCGGCCTTAATCAAAAGA--AAAAGGACCAGCCATCA
CCACCAAAGTATATTATTTTTCTAG-AAAAGGTCACGGAGTATATTTGTTTTT-CCAGGAAGAAAAGATCAGCAGGTATA
TGGTTGATC
>chr2A_1
ATGCGATCCACGCGCCATGTCTGGCCCGCGCACTGCGCCACCCTACTGTTACTGTACCCGCCGGGCCGAGGCCGCAACCC
CG------------------------------------------------GCGACGGATGGATCGGTGGCGGGTCGGGTC
GCGCGCTGGAGCTGGACCCGGCGGG----CGGGGGGAGCAGTGGTGGAGCGGGCGGACAGCGACGGGTACCGTACGGCGC
GGGCCCCCACCATGTGCGGCGTCGCGCTCCCCATTCCGTGGTTACGGAACCGTACAAGGGCGGGTACGGAAGGGGCGACA
CCCGCGGGCCCCGCCCTCACGTGCCGTCGCCCTCGCCGATCCCGTTCCGGCGACGCC--------CGCCCGCCGGCCCGC
AAGTGGAGTGGCGGACGCCCGCCCGACCCCCGGCACGCCACGTTCGCGCCTGTCCTCCTGCTCCGCCATGAGTGGGTCTC
TTTTCCTTTGCCCCATCCATGGTCCATCAGTCTTTCCATGGCCGAGTTGATCCGGCTGCCGCCGATTCACGAATGGGGAA
AAGACGGGTAGTAACTCGGCGAGCCCGACGTGTCGACCAACGCGCCGCCACGCCTCGCCGCAC-----------CGCAGG
CGAGGTGACACGGGCGCGCCGCGCAGGCGAT-------CCC-GTCCCACTCAGCTCGAGCTCGACCCCGACCCCGTCCCA
CTCTCCCCTTGCACGGCAAGTACTCTCCGTGGTCCTATTCGTACGCCTCG-CCCGTCCGTGTCGCCGACAAGCGGGCCCG
AGGGGCTCCGGGACCCGCCTGTCGGCGTC-GTGACGGGGAGCGATCTCGCGCCCGAGGCACGCGCGCGGGCGCTATATAG
CGACGCCTGCGC-------CACCCGCCCATCGCTGCTCCCTACACTGTGCCTGCTGTGCTAGGCTAGCTCATTCACTGCG
CGCGGCCGACCTCGCCTCGCCTCGGTATCTCCATCCCATCCTCCTCCGCACGCCACACCTTCGA--------------CC
GAGCCGCGTGAGGGGAGCGGAAGAGGAGGCGATGAAGAAGGGGGGGCTGCTGCGGTGCGTGTCGACGGGGGCGTGCAGGG
TGGCGCCGGGGGCCGTGGCGGAGATGGCGATCTCGCCGTCGGCGGCGTCGGGGAAGGTGCCGGCGGGGCACGTGCCGGTG
GAGGTGGGCGCGGAGGGGGAGGAGACGGAGCGCTTCCTCGTGCCGGCCGAGCTGCTGGGCCGCCCGCCCATCGCCGAGCT
GCTCCGCCGGGCCGCGCAGGAGTACGGCTAGGCGCGCCGTGGCCCGCTCCGCATCCCCTGCCCCGTCGCCGCCTTCCGCC
GCCTCCTCGGCGCGCTCGCCGGCGGGGACAGGGGCCACACGCCCGTCTACTACGCCGTAGTCGTCTGAATCTCATCGACG
------------AGGGAGCGAGCGAGCGAGCGGCCTCGTGGCCGCTATAGCTTAATTTTAGCGTGATCTTGTTCCGTTTC
TTGAGGGGTGGTGGCCGGTGCAGGGTCGTGTGCATGTGTTTGTGCTGTTCGATCGGTGGTTGTGCTTGCCCTCTCGATCG
AGGGCTGAGGCTTCTAGCTAGACTCCATTTGGGACTCG-TTCTTCTTCAGCTCTTGCTACTTTTCCTCTCTCTTTTTCTG
GGAAATAATATGTATGTAAATTTGTACATCCAGATCTATGATGAGATGCTACTGAATTCTATGAACTAGTACGTGCAAAT
CTTTGCCTCCCTGTTCGTTCAGTTTCTTTTCGTTACACCTGTATTCTTCACTGGTGTTCTTCATGCAGCTATAACTAATT
TCCTCGTGTTAGTAGGAG---------------------TAGAT------CAGACGCAGTCCAGATGATATGCATGGCCC
AAAGATGTCT-----AACCCTTCGCTTATCTGCTACTTTGTCTCATGTCCCAACTTTGTAGGGTACTGTCTTGAGCCTCG
ATAACCGTATACATACA----CGTCCTGTGTGATTTTTCACGATACCCATCACAGAATGCGTATCTGTGCAAACAAAAGA
AAAGGAAAACAAATCTTCTTTTTCTTATGGTATAGGTTTCCTTTCGCTAGATATTTT---CTCCGTCCGTCCTTCCATTT
GGGCCACACTCTGCCGTGCATGTTGCATCAGTCCTCCAGTCTAGTCTAGCTAGCTAGTCTCAACAACTCGCCCCAAGGTC
CAAGGACAACGTAAAGGAAGGGCCAGCAAAGAATTTAAGGAGCGCACGCACTGTTTTTTAAGCCAGGCATGGAAATGAAG
GCCTCTGCTTTCTGATGGTACGGGAGAATTCGATGCTCGCCCAGCGGCCTTATAATCAAAAGGAAAAGGACTAGCCATCA
CCACCAAAGTATATTATTTTTCTTGAAAAAGCTCACCGAGTATATTTGTTTTTCCCAGGGAGAAAAGATCAGCAGGTATA
TGGTTGATC
>SNPs
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SSS-S-S-SSSSSSSSSSSSSSSSSSSS---------S----SSSSS---------------------------------
-------------------------SSSS-----------------------------------------------S---
--------------------------------S-----------------------------------------------
-----------------------------------------------------------S--------------------
-----------------------------------------------------------------------------S--
SSSS---SS----S---------------------------S------------------S-------------------
--------------------------------------------------------------------S-----------
-------------------S---------------------S-------S------------------------------
-----------------------------------------------S--------S-----------------------
-----------------------------------S-S------S-----------------------------------
------------SSSSSSS-------------------------------------------------------------
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---------------------------------------------S----------------------------------
--------------------------------------S-----------------------------------------
-----------------------------------------------------------------S--------------
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-S------S-----------------------------------------------------------------------
-----------------------------------------S--------------------------------------
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--------------------------S-----------------------------------------------------
-------------------------------------------------------------S------------------
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----------------------S---------------------------------------------------------
-----S--------------------------------------------------------------------------
-----------S------------------------------------------------S------S------------
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--------------------------------S------------------------------------S----------
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------------------------S-----------------------S--------------------------S----
S--S----------------------------------------------------------------------S--S--
----S----
>forward_768
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----------------------------GTGGTCCTATTCGTACGCCA--------------------------------
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>reverse_1926
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-----AGTCTAACCCTTCGCTTATCTGC----------------------------------------------------
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