>input_sequence_82878
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--------------------------------------------------------ATGGATGTGGAGAGCAATGCGAGG
GCCATAGCGGAGGCCGGCCGCGACTGCCACAAGCTCCCGCTGGCGCTGATCCCTGGAGGCGTTTTCCAAGCCGCGGCGGC
GCTGCGGCTCTTCGTCTTCAAGAAGCCCGATGGTATGTTCATCCATCATGGCAAGGTGCCCTTCTACCTGTACTACGCCT
TGCTGACGGCCGTGGCGCTCTTCGGTTTCGTCGAGGCCTCGCTGGGCTTTTGGGTGGCACGCGACCTGCACGACCGTCGC
CGGCAGTTTTACGGGAAGGTGGCCATGGTGATCTCCGTCCTCTTCCTCATCCTCGTTGGTGGCCTGGGTGGTTTTGCCAT
ACCAAAGTAG----------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G129900
CTGGAGCGAGTAAGAAACTTAACAGGGGGTCGAGGGTGGGGGTGGGGGGTGTCGCGGAGTTGTTAATCAGGGCGAGACTT
AGAAGGATGGTCGGGGCAGTGGCCAGCACAACGGTGGTAGGAGGTCAAAGGGAAGGGCGGGGCGGTAAGGTGGCAGTAGC
CGCCAGTCGCCGGGGGCGGAGGTAGGCGGTTAGGGCTGGGTCGGCCATCGGCTACGTGACGAAGAAGAGGGAGGTGAAGA
TAAACAATGCACAATCTGTTTTCGGATGAAGATCTAACGGTCCTGAACAAAAGCGGCTGATGCAAACAAAATATTATGGT
GCATGATGTATAGGCGCTCCTTTATTTTTCAGAAGTTGAATACAGTCATCTCATCACACACAAAGGCCATTGTGTTTGGT
CAAGACGTAGCTAAGGTTTGATCGAGCACGACATCATTCCTTTGATTGATGTGAGGATGTGCTTGACTTTGAGGTTGCCA
CTGTAATAGCCTGGTTCGTGTTCGTGAATCGTGTTTGTGCTTGTGCTCGTGGTCTTGTGACGCTAGCTGCCATTGCTTCC
CTCAGTCAAGAGCCTA-AAATGGAATTT--TAATATAACAAAGCTTTGATGTGACATGTGACGCTGCTGCCAGTTGAGAC
CTATCGCTCTATCACCCAACCATGGCTCCTGTAATCGTGTTCGTGCTCATGCTCGT----GCTCGTGTTCGTGCTCATTT
GGACCGGGGTAGAAATTTCTTGTCTGAATCTGAATAAAGAAGAAAGGGATGGCCTGGAGCTTGGCAGCTGACTCT-----
--TAACATGGATTCGTGTTTTTCGATTTCGTGCTCTTGTTCGTATCGTCTTCCCGGCCCTGTCTTCCAGTGCACCCCGTT
GTCTATAAAAGTCCATGGCCCCTCTCCACCAT-TTTCGCCACGCTCTGAAGCTCCAAATTGATAGTTTTCCCCTCT-ACA
CGCCGCCAACAGACCACTCACAAATCACAAGTAGTAGTAGTAGGAACTAGCCAGCCATGGATGTGGAGAGCAATGCGAGG
GCCATAGCGGAGGCCGGCCGCGACTGCCACAAGCTCCCGCTGGCGCTGATCCCTGGAGGCGTTTTCCAAGCCGCGGCGGC
GCTGCGGCTCTTCGTCTTCAAGAAGCCCGATGGTATGTTCATCCATCATGGCAAGGTGCCCTTCTACCTGTACTACGCCT
TGCTGACGGCCGTGGCGCTCTTCGGTTTCGTCGAGGCCTCGCTGGGCTTTTGGGTGGCACGCGACCTGCACGACCGTCGC
CGGCAGTTTTACGGGAAGGTGGCCATGGTGATCTCCGTCCTCTTCCTCATCCTCGTTGGTGGCCTGGGTGGTTTTGCCAT
ACCAAAGTAGT---AGCCATGAGC----CTATGATCACGGTGCTTTCCCTGT--TTGGAAATGTTAGAAGAAGCTCATGC
AGTAAGTTTGTCCATCGATCCACAAGGGAACACTGTTGATCTAGCGGTTCATGTCATGTTATACC---------------
----------------------------------------------------TGTTTACACTATTATATGCTCTGTAATT
TTATTTTGGGATTA-----TTTTACCAAGGTTTGTACTTTTATACTTTTTGATCACG-------------GTAAATTCCA
TGGCTTGTAATAATTCGGCTGAATTTTGTTACA--------C---------------TTTGATCCATTCTTTATGTAATG
GAAAACT-----------------------GAAGAACTGTGGCAGTTGTATGGTGGATGGACTCATGGATATTTGCATTC
CGTGTATGCATGCTGCAAGAGAAATAGAGAATGCTGAATGCATACGCGTGAACTGAATTTTGAGTA--------------
-------------------AAGTAGTGCGCCACAGAATTTTGCGTTCCCT---CATAAAGAAAAAAAGAGTTCCGCCAGG
AGCCCAGGGC-------------------------CC-AGCCCACATATGCACTTGCGGC----CCACCACCTATAGCTT
GCT------TAAGAGAGATCCCCGGCCTTCTTG-CCTGTTAACTGCTCTCCTATTCAGCACTCCACACCTC----CCACC
TACCTCGCTTCCGCCGTTGACCATCGCCTGAGCAGAAGCTTTGA-GATGGAGGAAGAAGCTTTGAGGGCGGCGATGGAAG
ACGCTTTCCTGGAGGGCGCGGTTCAATGGCGCGCGGATACCATCCTCCAGACCCTGCGGATGGACAAGCTAGATGCGTGG
ATCCGTGGAGAGGGGCTTTCCGATGACATCGAGGCGCTAAAATCTGAGATCGATGAAGTCAAGGCGACGGTCTCTGATGT
AAAGGGGAGGGCGATCGGCAACAGGCGGCTGGCTAGGTCTCTCGCCGCGCTCAAGCAGAAGCTCTTCGACGCCGATGACG
CGATCGACGAGCTCGACTACTACAGACTTCTACACCAG---GTCGA------AGGAGGTAAGTTGATTCCTAGAAATGGT
TTCTATTTCAAATTCCAGTGAAATTACAGTTTATTTC
>chr2A_1
CTGGAGCGAGTAAGAAACTTAACAGGGGGTCGAGGGTGGGGGTGGAGGGTGTCGCGGAGTTGTTAATCAGGGCGAGACTT
AGAAGGATGGTCGGGGTAGTGGCCAGCACAACGGTGGTAGGAGGTCAAAGGGGAGGGCAGGGCGGCAAGGTGGCAGCAGC
CGCCAGTCGCCGGGGGCAGAGGTAGGCGGTTAGGGCTGGGTCAGCCATCGGCTACGTGACGAAGAAGAGGGAGGTGAAGA
TAAACAATGCACAATCTGTTTTCGGATGAAGATCTAACGGTCCTGAACAAAAGCGGCTGATGCAAACAAAATATTATGGT
GCATGATGTATAGGCGCTCCTTTATTTTTCAGAAGTTGAATACAGTCATCTCATCACACACAAAGGCCATTGTGTTTGGT
CAAGACGTAGCTAAGGTTTGATCGAGCACGACATCATTCCTTTGATTGATGTG---------------------------
---TAATAGCCTGGT-------------TCGTGTTTGTGCTTGTGCTCGTCGTCTTGTGACGCTAGCTGCCATTGCTTCC
CTCAGTCAAGAGCCTAGAAATGGAATTTTATAATATAATAAAGCTTTGATGTGACATGTGACGCTGCTGCCAGTTGAGAC
CTATCGCTCTATCACCCAACCATGGCTCCTGTAATCGTGTTCGTGCTCATGCTCGT----GTTCGTGTTCGTGCTCATTT
GGACCGGGGTAGAAATTTCCTGTCTGAATCTGAATAAAGAAGAAAGGGATGGCCTGGAGCTTCGCAGCTGACTCT-----
--TAACATGGATTCGTGTTTTTCGATTTCGTGCTCGTG-----------TTCCCGGCCCCGTCTCCCCGTCCACCCCCTC
GTCTATAAAGAG-CCACC-CCCCGTCCGCCAT-TTTCGCCACGCTCTGAAGCTCCAAATTAACAGTTCTCCCCTCT-ACA
CGCTGCCAGCAGACAACTCACAAAGTCGCAGATCGTAGCTAGGCC--------GCCATGGATGTGGAGAGCAATGCGAGG
GCCATAGCGGAGGCCGGCCGCGACTGCACCAAGCTTCCGCTGGCGCTGATCCCTGGAGGCGTTTGCCAGGCCGCGGCGGC
GCTGCGGTTGTTCATCTTCAAGAAGCCCGACGGTATGTTCCTGCACCATGGTAAGGTGGCCTTCTACCTGTACTACGCCT
TGCTGACGGCCGTGGCGCTCTTCGGCTTCGTCGAGGCGTCGCTGGGCTTTTGGGTGGCACGCGACCTGCACGACCATCGC
CGGCAGGCTTACGGGAGGGTGGCCATGGTGGTTTCCGTCCTCTTCCTCGTCCTCGTTGGTGGCCTCGGTGGTTTTGCCAT
GCCAAAGTACTAGCAGCCATGAGCCTAGCTATGATCACGGTGCTTTCCCTGTATTTGGAAATATTAGAAGAAGCTCATGC
AGTAAGTTTGTCCATCGATCCGCATACGAATACTGTTGATCTAGCGGATTATGTCATGTTATCTTTTTTTGTTGTTGCAA
GGATGTAATGTTATCTTCTTTTTGTTTTTCTGCGGGGATGTAATGCAATCTTTGTTTACATTATTATATGCTCTGTAATT
TTATTATGAGAG------TTTTTACCAAGGTTTGTACTTTTATACTGTCCTGATACAAACTGTAATCACTGTAAATTCCA
TGGCCTGTAATAAGTCGGCTGAATTTTGTTGTACTTTGATCCACTTCTTTTCGAATTTTTGATCCACTCTGTTTGAAATG
GAAAAGGGGGGAGGCCAGTTGAATAAAACGGAAGGATTGTGGCAGTTGTATGGTGGATGGA--------TATTTGCAATA
GAAAAAA--------------AAATAGAGAATGCTGAATGCATACGCGTGAACTGAATTTTGAGTGTCACGGTCGTTCCT
CTTCAGAGC----------AAGCAGTTCGCGACACAAGTCTGCGTTCCCTG--------AAAAAAAAATGTTCCGCCAGT
AGCCTAGCGGCCCAGCCCACATACACACTTTGCGGCCCAGCCCACATACACACTTTGCGGCCCACCACCACCTATAGCTT
GCT------TAAGAGAGATCCCCCGGCCTTGTTCCCTGAAAACTGCTCTCCCATTCGGCACTCCACACCTC----CCA--
-------------CCGTTGACCATCGCCCGAGAAGAGGCGGCTCTGATGGAGGAAGAAGCTCTGAGGGAGGCCATGGAAG
ACGCCTTTCTGGAGGGCGCGGCCCAATGGCGAGCGGACAACATCCTCCAGACCCTGCAGATGGACAAGCTGGACGCGTGG
ATCCGCCAAGAGGGGCTTGGCGGTGACATCGAGGCGCTCAAATCTGAGATCGATGAAGTCATGGCGACGGTCTCTTATGT
CAAGGGGAGGGCGGTAGGCAACAGGAGGCTGGCTAGGTCTCTCGCCGCGATCAAGCAGAAGCTCTTCGACGCCGATGACG
CGGTCGACGAGCTCGACTACTACAGACTTCAACAGCAG---GTCGAACTCGAAGGAGGTAATTTGATTCACAGAAATGGT
TTCTATTTCAAATTCCAGTAAAATTAGAATTTGATT-
>chr2D_613
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-------------------------------------------------------ATGTGGCGCTGCGCACTGAGACCTG
CAGTTTTAG---CACCCAACCATGGCACCTGTAATCGTGTTCGTGCCCGTGCTTGTGCTCGTTCGTGTTCGTGTTCATTT
GGACCCCGGTAGAAATTTCCTCTTCT--TCTGAATAAAGAAGAAAGGGATGTCCTGGGGTTCCGCGGCTGACTATATTGT
AATAGCATGGTCTCGTG-TTTTTGATTTCGTGTTCGTGTTCGTGTCGTGTTCCTGGTTCCA------------------T
GTCTATAAAAAGTCCATT-CCCCATCCACCATGTTTCACCACGCTTTCAAGCTTCAAA----CACTTCTCCCCTGCAACA
CGCTGCTAGCAGACCACTCACAAATCACAAGTAGTAGTAGTAACC---AGCCAGCCATGGATGTGGAGAGCAATGCGAGG
GCCATGGCGGAGGCCGGCCGTGACTGCACCAAGCTTCCGCTGGCGCTGATCCCAGGAGGTGTTTTCCAGGCCGCGGCGGC
GCTGCGGCTCTTCGTCTTCAAGAAGCCCGACGGTATGTTCCTCCATCATGGCAAGGTGGCCTTCTACCTGTACTACGCCT
TGCTGACGGCCGTGGCGCTCTTCGGTTTCGTCGAGGCCTCGCTGGGCTTTTGGGTGGCACGCGACCTGCACGACCGTCGC
CGGCAAACTTATGGGAAGGTGGCCATGGTGGTCTCCCTCCTCTTCCTCGTCCTCGTTGGTGGCCTGGGTGGTTTTGCCAT
GCCAAAGTACTAGCCATGCAAAAGC------------CGGTGCTTTCCCTGT--TTGGAAATATT---AGAAGCTCATGC
AGCAAGTTTGTTCATCGATCCTCATGGGAATACTGTTGATCTAGTGTATCATGTGACGTTATATA---------------
----------------------------------------------------TATTTT--TGATTATCAGCTCTGTAATA
ATTTTATTATGTGATTTTTTTTTACCAAGGCTTGTACTTTTATACTGTCCGGATACGAACTGTAATCACTGTAAATTCCA
TGGCTTGTAATAATTCGGCTGAATTTTGCTACACTTTGAATC---------------TTTGATCCACTCTGTATGTAATG
GACAAGGGGCGAGGCCAGTTGAGAAAAG--GAAAAATTGTGGCAGTTGTATGGTGGATGGA--------TATTTGCATTC
CGTGTATGCTGT----AAGAGAAATAGAGAATGCTGAATGCATACGCGTCAGTTGAATTTTGAGTGTCGCGACAGAAGTT
TTTGTTTTTGTTTTTTGAGAAACAGTCCGCGACAGAAGTTTGCGTTCCCTTCCCACAAAAAGAAAAGAAGTTCCGCCAGC
AGCCCAGCGC-------------------------CCCAGCCCACGTACACACTTTGCGGCCCACCACC-----TAGCTT
GCTTAAGAATAAGAGAGATCCCCCGGCC---------------------CCTGTTCAGCACTCCACACCTCCCACCCACC
TACCTCGCTTCCGCCGTTGACCATAGCCTGAGCAGGATCTTTGA-GATGGAGGAAGAAGCTCTGAGGGCGGCGATGGAAG
ACGCCTTTCTGGAGGGTGCGGTTGAATGGCGAGCGGACACCATCCTCCAGACCCTGCGGATGGACAAGCTGGATGCGTGG
ATCCGCGGAGAGGGGCTTGCCGATGAGATCGAGGGGCTCAAATCTGAGATCGATGAAGTCATGGCGGCGGTATCCTATGT
CAAGGGGAGGGCGGTAGGCAACAGGCGGATGGCGAGGTCTCTCGCGGCGCTCAAGCAGAAGCTCTTCGACGCCGATGACG
CTGTCGACGAGCTCGACTACTACAGACTTCAACACCATGTCGTCGAGGTCGAAGGAGGTAATTTGATTCCTAGAAATGGT
TTCTATTTCAAATTCCAGTGCAAATTGAAGTTGAT--
>SNPs
---------------------------------------------S----------------------------------
----------------S-----------------------------------S-----S------S----------S---
-----------------S------------------------S-------------------------------------
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-----------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS------------SSSSSSSSSSSSS----------------------S-----------------------------
--------------------------------------S-----------------------------------------
-------------------------------------------------------------S------------------
-------------------S------------------------------------------S-----------------
-----------------------------------S-------S----S----------S----S--S--S------S--
----------SSS-SSSSS---SS------------------------------------S-S----S------------
---S----S----------------------------------SSSSS--------------------------------
---------------------------SS------S--------------------------------S-----------
------------------------------S---------S-----------------S---------------------
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------SS----------------------S-----------------S-------------------------------
S--------S----------------------------------------------------S-----------------
---------------------S--S-----S----------------S---------------SS---------------
------------------------------------------------------------S-------------------
-----S--S---S---------------------------------S-SS-SSS--------------------------
------------------------------------------------------------------S---S---------
-----SS-----------------------------S------------------------SSSSSSSS-----------
---------SSSSSSS-------------------------------------------------S--------------
----------------------S---S---S------S-----------------S---S-------S-----------S
-------S----------------------------------------SS-----SSS-S--------------------
-----------------------S-S-S-SS-S-----SS----------------------------------------
-------------------------------------------------------------S------------------
----S--S-----------------------S-----S--------------------------------S---------
-----S------------S-------------------S----------------------S-------------S----
S------------S-S----------------------------------------------------------------
--S---------------------------S------------------------------S------------------
--------------------------S-S---SS--S
>forward_531
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-------------------------------TGTTTGTGCTTGTGCTCGTG-----------------------------
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>reverse_2511
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------------------------------TACACCAGGTCGAAGGAGGT------------------------------
-------------------------------------
