>input_sequence_82875
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---------------------------------------ATGGCCGCCACCGCGTCCTTGTCCGCCGTCGCGGCGCCCCT
GTCCGTCGCCGGGCTCAAGAAGGCCGCGTCGTTCCGGCCCCTGCCGGTGGCCAGGGCCGGCAGGCCCGCGGCGAGGATGA
CGGCCGTCCGGGCGTCCTCCGCGTCCGTGCAGGAGAAGCTCACGGCCGGGCTGACCGCGGCGGCCGTGGCGGCGGCGCTG
GTGCTGCCCGAGGTCGCGGAGGCCGCGTCCCCGGGGCTGTCCCCGTCGCTCAAGAACTTCCTGCTCAGCATCGTGTCCGG
CGGGGTCGTCTTCGCCGGCATCGCCGGGGCCGTCGTCGCCGTCTCCAACTTCGACCCCGTCAAGAGGACCTGA-------
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>chr2A_1_TraesCS2A01G111300
CTCGTCGCGCCGAATTTTTTATGTGAAAACAATTTTTCGATCGGACCGACGGTTTGAACTACAAAACATTTTGGAAATTC
AAAATATGAGAAAATCTAGAGTGATGTCATCAATTTTGTCTTACATGCATGCATATAATTAGGCGTTGTATTAAGAGTCA
TGACATGTGCATGAAGAGAGAGAAAAACTAGTAATCACATGCATGTGAAGAAAAATGGCTGCATGCACTCGCATGCATGC
ACGCACTAGTTAGGTCGTCCTAATTTGTTGTTTAAAATCCGAACGACTGCGCGTTAGTACAGTCCATCTTTCAAACCCTC
AAGGTTAGTCTAGTTTCTCTAGAATTGGTCTCTTGCAAATTCTACACGCAAAGTCTCATGCGTCTCTTCATGTAGACATC
AGATCGCTTGTCTTTTTTTTAGTGAGCTTATGTGTTTTTTTTAAAATTATTTTAAGGGCATATCCTTTGCTTAAAAACGA
ATCAAATGCACACGTACAAAGTACTAAAAGT------TTTGAACTTGTTGGACTCGGTATGAATCCAGAACACTATGTAT
AACAAATATTTGCGCTTTATAAAAGGAAAGACGGATGGTAATTGTACGCACAACTTATTATGTCGACACACAAAGAGACA
CGTTCTTGCTAAGTTATGTGCCTCACACCCCATCACAGGATGTAAACACACCAATTTTGTGAGAATTTTCCGGACCTTGT
-----GTGTAG---------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTGAAAAAATTAACACGGAGA
AAGGGGGGACCTGAGCCAATCAGATCCGAACCGGAAATCGCAAGCTGGAACGCCACAGCCACATGCCACCTCCGGGGATA
ACGTTATCCCTCCACGGCGCGACGAGAGCTCCCCACGTCGGACTCCCGCGCCGACCTGGCACGCCGCGATC---------
-CTCCACACGCCCTACTAAAACCTTCTCCGCGCCAACCATCCCGTCCCCCACACACCTCACGCCGCGCGCCAAGCCAAGA
AGAAGA----------CGCACCCACGCAGCACGCACGCCATGGCCGCCACCGCGTCCTTGTCCGCCGTCGCGGCGCCCCT
GTCCGTCGCCGGGCTCAAGAAGGCCGCGTCGTTCCGGCCCCTGCCGGTGGCCAGGGCCGGCAGGCCCGCGGCGAGGATGA
CGGCCGTCCGGGCGTCCTCCGCGTCCGTGCAGGAGAAGCTCACGGCCGGGCTGACCGCGGCGGCCGTGGCGGCGGCGCTG
GTGCTGCCCGAGGTCGCGGAGGCCGCGTCCCCGGGGCTGTCCCCGTCGCTCAAGAACTTCCTGCTCAGCATCGTGTCCGG
CGGGGTCGTCTTCGCCGGCATCGCCGGGGCCGTCGTCGCCGTCTCCAACTTCGACCCCGTCAAGAGGACCTGATCATCTT
ACTGGATTCTCATGGCAGGTCGCCTCGCTTTGTATCTCGATGAATCTCTTTGCTGTGTTTTATTCGGAGACTCTGTACGT
AGAAGAGATCCATGACAATGGAGTTCTGATTAATGGCTGTGTATACTCTGGTTCGTCTGCTTAAACTGTTGCTTGCGGGC
TGTATCCAGTAATTGCATGTTTGTTTACTTCCGAAACTACTTCCCCCTCT-CCAAATTACTTGCAGCGTGTCTGGCAGTC
TGAGGGAAAGGGAATG-AAGATTACAACAGCGAGGAGTTTGTCTAGAGATTAGACTTGAGAATTACTAGAATTTTAGTCT
CAGTCTCCTTTTTGATGTGTGGTGGGAACAATTATCGGTGAGAATTTGGGAGGAACCTCTATCCAGCCTGAATTAGCAAG
GGGCTAGGGAAGAGAGGCGTGGAAATTGACCTCTTTGGTTCCCTTTCCCCTTCTCTCCTCAACTCCCTTCCCCCTAGCCA
AACAATGGATAACACGTCTTGTATCCTCGTAACTCTCGTTCCTTATCGCAAATTTCCTCCAACGAGACACAATTTTAGTT
TTAGGTTGATCCTATATCAAACTTCTCTAATTTGGGACCAAATATGTAGAAAAAAC-ATATCAACATTCACACCATCAAA
TTACTTTCATTAAATTCATCATCAGATATATACTTTTATTCATATACTCCCTCGGTCCTAAATTACTTGACGCAAAAATG
GATAGAAATTAATGGATCTAGAACTAAAAATTCGTCTAGATACATCCATTTATGTGACAAGTAATTCTAGGCGAAGGGAG
TATACATCTGATGTTGTAGATATTGGATTTTTCATATAAACCTGGTCAAACTTGGAGAAGTTTGACTTAGACAAAACCAT
AACTTCAACTAATTTGAAAGGGAGGTAGTACCAACCAGTGCAACTTCTTTTCAACTTTTATCAAAAATC--TTGAATCCA
ATTTTTGATTCTTGTCTTACGAAACGAACGTGTCAGCG
>chr2D_306
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-----------------------------------------------------------------ATCTTTCAAACCCTC
AAGGTTAGTCTAGTTTCTGTAGAATTGGTCTCTTGCAAATTCTACACGCAAAGTCTCACGCGTCTCTTCATGTAGACAT-
--ATCGCTTGTC-TTTTTTTAGTGAGCTTATGTGTTTTTTTTAAA-TTATTTTAAGGGCATATCCTTTGCTTACAAACGA
ATCAAATGCACACGTACAAAGTACTAAAAGT------TTTGAACTTGGTGGACTCGGTATGAATCCAAAACACTATGTAT
AACAAATATTTACACTTTATGAAAGGAAAGATGGAGGGTAATTGTACGCACAGCTTATTATCTCGACACACAAAGAGACA
CGTTCTTGCTAAGTTATGTGCCTCACACTCCATCACACAATGTAAACACACCAATTTTGTGAGAATTTTCCGGACCTTGT
-----GTGTAGTTAAACCCACACGGTGCCGGGTGCACCCACGTATATATCTTCAAAGGAGAAAATCAACAGCAGGGT---
-------------------TGCACTGAATACAAATCAAACGTGTATGAACGAGCTGAAA-AAGTATTATCCTCTCGCTCT
GCTCCAAATGCCGCGTCACATCAGCAGTACATACATACGTTTTCACGTATCACCCGACCTTGAAAAAATTAACACGGAGA
AGGGGGACCCCG--GCCAATCAGATCCGAACCGAAAATCGGGAGCTGGAGCAGCCCAGCCACATGCCACCACCGAGGATA
ACGTTATCCCTCCACGGCGCGACGAGAGCTCCCCACGTCGGACACCCGCGCCGACCTGGCACGCCGCGATC---------
-CTCCACACGCCCTACTTTAACCTTCTCCGCGCCAACCATCCCGTCCCCCACACACCTCACGCCGCGCGCCAAGCCAAGA
AGAAGA----------CGCACGCCGACCTTTCTCTCGCCATGGCCGCCACCGCGTCCCTGTCTGCCGTCGCGGCGCCCCT
GTCCGTCGCCGGGCTCAAGAAGGCCGCGTCGTTCCGGCCCCTGCCGGTGGTCAGGGCCGGCAGGCCCGCGGCGAGGATGA
CGGCCGTCCGGGCGTCCTCCGCGTCCGTGCAGGAGAAGCTCACGGCCGGGCTGACCGCGGCGGCCGTGGCGGCGGCGCTG
GTGCTGCCCGAGGTCGCGGAGGCCGCGTCCCCGGGGCTGTCCCCGTCGCTCAAGAACTTCCTGCTCAGCATCGTGTCCGG
CGGGGTCGTCTTCGCCGGCATCGCCGGGGCCGTCGTCGCCGTCTCCAACTTCGACCCCGTCAAGAGGACCTGATCATCTC
GCTGGATTCTCAGGG--------CTCGCTTTGTATCTCGATAAATCTCTT-GCTGTGTTTTATTCGGAGACTCTGTACGT
AGAGGAGATCCATGACAATGGAGTTCTGATTAATGGCTGTGTATACTCTGGTTCGTCTGCTTAAACTCATGCTTGCGGGC
TGTATCCAGTAATTGGATGTTTGTTTACTTCCGAACCTACTTCCCCCT-T-CCAAATTACTTGCAGCGTGTCTGGCAGTA
CGAGGGAAAGGGAATGGAAGATTACAAGAG---GGAGTATGTCTAGAGATTAGACTTGAGAATTACTAGAATTTTAGTGT
CAGTCTCCTTTTTGATGCGTGGTGGA---AATTATCGGTGAGAATTTCGGAGGAACCTCTATCCAGCCTGAATTAACAAG
GGGCTAGGGAAGAGAGGCGTGGGAATTGACCTCTTTGATTCCCTTTCCCCTTCTCTCCTCAACTCCCTTCCCCCTAGCCA
AACAATGGATAACACGTCTTATATCCTTAAAACTCTCGTTCCTTATCGCAAATTTCCTCCAACCAAACACAATTTTAGTT
TTAGGTTGATCCTATATCAAACTTCTCTAATTT-GGACCAAATATGTAGAAAAAAATATATCAACATTCACACCATCAAA
TTACTTTCATTAGATCCATCATCAG--ATATAT-----------------------------------------------
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--------------------------ACTTTTTTATA-----TA------------------------------------
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>chr2B_306
ATCTTTCA------------------------------------------------------------------------
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------------------------------------------------------------------------AAACCCTC
AAGGTTAGTCTAGCTTACGTAGA--TGGTCTCTTGCAAATTCTACACGCAAAGACACAATCTTTTTATGTA-TAGACATC
AGATCACTTGACTTCTTTTTAGTGT-CTTATGTGTTTTTTTAATTAA-----TAGGGCCATATAGTCCGCTTA-AAAAAA
ATCAAATGCACACTTGCAAAGTACTGAAAGCTGAAAGTTTGGATTTGTTGGACTCTGTATGAACCCAGAACAACAAACTT
ATACTCCATAACAGTGTGTGATT------GATGGAGGGTCGGTCTT----------------------------------
-------------------------------------CAATGTAAACACGCCAATTTTGTGAGATTTTTGCGCACCTTGT
GTGTAGTGTAGTTAAACCCACACGGTGGCGGCTGCACCCACGTATT----TTCAAAGGAGAAAATCAACTGCAAATTTGC
ATAGCACTCTTGCACTGTATGCACTGAATCCAACTCAAACGTGTATGAACGAAGTGAAAAAAGTATTATCCTCTCGCTCT
GCTCCAAATGCCGCGTCACATCACCGGTACATACATACGTTTTCACGTATCACCCGGCCCTGAAAAAA-TAACACGGAGA
AGGGGGACCCCG--GCCAATCAGATCCGAACCGGAAATCGCAAGCTGGAACGCCACAGCCACATGCCACCTCCGGGGATA
ACGTTATCCCTCCACGGCGCGACCAGAGCTCCCCACGTCGGACTCCCGCGCCGACCTGGCACGCCGCGATCCCGCCTCCG
CCTCCACACGCCCTACTAAAACCTTCTCCGCGCCAACCATCCCGTCCCCCACACACCTCACGCCAGC-------CCAAGA
AGAAGAGACGCCGCTACGCACCCACGCAGTACGCACGCCATGGCCGCCACCGCGTCCCTGTCTGCCGTCGCGGCGCCCCT
GTCCGTCGCCGGGCTCAAGAAGGCCACGTCGTTCCGGCCCCTGCCGGTGGTCAGGGCCGGCAGGCCCGCGGCGAGGATGA
CGGTCGTCCGGGCGTCCTCCGCGTCCGTGCAGGAGAAGCTCACGGCCGGGCTGACCGCGGCGGCCGTGGCGGCGGCGCTG
GTGCTGCCCGAGGTCGCGGAGGCCGCGTCCCCGGGGCTGTCCCCGTCGCTCAAGAACTTCCTGCTCAGCATCGTGTCCGG
CGGGGTCGTCTTCGCCGGCATCGCCGGGGCAGTCGTCGCCGTCTCCAACTTCGACCCCGTCAAGAGGACCTGATCGCCTC
GCCGGATTCTCAGGGCACGTCGCCTCGCTTTGTATCTCCATAAATCTCTTTTCTGTGTTTTATTCGGAGACTCTGTACGT
AGAAGAGATCCATGACAATGGAGTTCTGATTAATGGCTGTGTATACTCTGGTTCGTCTGCTTAAACTCATGCTTGCGGGC
TGTATCCAGTAATTGGATGTTTGTTTACTTCTGAAGCTACTTCCCCCT-TTCCAAATTACTTACAGCGTGCTCGGCAGTA
TGAGGGAAAGGGAATGGAAGGTTACAAGAG---GGAGTATGTCTAGATATTAGACTTGAGAATTACTAGAATTTTAGTCT
CAATCTCCATTTTGATGTGTGGTCGG---AATTATCGGTGAGT-------------------------TGAATTAACAGG
GGGCTTGGGAAGAGAGACCATGAAATTGACCTCTTTTATTTCCTTTCCCCTTCTCTCCTCAATTCCCTTGCCCCTAGCCA
AACAATGAATAATATGTCTTGTATCCTTAA-ACTCTTGTTCCCTATCACAAATTGCCTCCAACCAAACATGCTTTTAGTT
TTAGGTTGATCCTAAATCGAACTTCTTTAAATT-TGACCAAATCTATAG---AAAATATATCAACATTGACACCATTCAA
TTACTTTCATTAGATCCATCATAGG--ATATACTTTTATTCATATACGCGCTCCGTCCCGAATTACTTGTCGCGGAAATG
GATATAAATTAATGTATCTAAAACTATAAATTCATCTAGATACATTCACTTCTGTGACAAGTAATTCAAACGAAAAA-AG
TATATTTCTGATGTTGTAGATATTGGACTTTTTTATA-----TGGTCAAACTTGAAGAAGTTTGACTTAGACAAAACCAT
AACTTCAACGAATTTGGAAGGGAGGTAGTACCAACCAGTGCAACTTCTTTTCACCTTTTATCAAAAAAAAATTGAATCCA
ATGTTTGATTCTTGCCTTACGGAACGAACGT-------
>SNPs
S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
------------------S---------------------------------------S---------------------
-------------------------------------------------------------------------S------
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-----------S-------------------S---S----------------S--------S------------------
----------------------------S--------SS-----------------------------------------
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-S----SSS--SSS------------------------------------------------------------------
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-----------------------------S---------------------------S----S-----------------
--------------------------------------------------S-----------------------------
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-------------------------------------------------------------------------------S
S-----------S----S-----------------------S--------------------------------------
-------------------------------------------------------------------SS-----------
---------------S-------------------S------------S------------------------------S
---------------------------S--SSS-----S-----------------------------------------
--------------------------SSS------------------S---------------------------S----
-------------------------------------S------------------------------------------
---------------------------SSS---------------------------------S-S--------------
---------------------------------S---------------------S------------------------
------------S--S---------SS--------------------S-S---S----SS---------S---SS-----
----S---------S-----S-----S------S-----------S--S--S---------------S-SSSS--SSS--
----SS---------------------S----SSSSSSSSSS------------S-------------------------
---------S------S------------------------------------S-------------SS-----------
--S-----------S------S---------SSSSSSS
>forward_61
-----------------------------------------CGGACCGACGGTTTGAACTA-------------------
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>reverse_1618
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-----------------GGTCGCCTCGCTTTGTATCT-------------------------------------------
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