>input_sequence_82870
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ATGGCGCCAGAGCGGAGGTGGTCGGGGC
TGGCGGCGGCGGCGGACGCGGCGTCGTGGTGCTGCGGGCTGGCGCTGGTGACGCTGCTGCTGGTGTCGTCGCTCCGGGCC
GGCGAGGGGGAAGAGAGCGGCGGCGGGGCGGTGGTGGTGCGCGGGGCGCGGATCGCGGCGGCGCCGCGGCGGCCGTGCGA
CGAGATATACGTGGTGGTGGAGGGGGAGACGCTGCACAGCATCAGCGACCGGTGCGGCGACCCCTACATCCTGGAGCACA
ACCCGCACGTCCACGACCCCGACGACGTCTTCCCGGGCCTCGTCATCAAGATCACGCCGCGCGCCGCCGCTGACGGCCGC
AAGTGA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>chr1A_1_TraesCS1A01G187700
GAGGCGGACGAGGGGTGCGACGACCCGGACAAGGATGAATTTTGGGCGCAATTCCACAGCTCCGATGATGAGGAGTGGTT
TTATCTTCGGTGTAGTTCAATTAGTAGTTCGAACTAGTAGTATTAACTTGATGAATGTAGTAGTTTGAATTGGTTGAAGT
AGTTGTTTAATTTATGTTTTTAATTAGAACTATGTTTAGTTATGTTTGAAATGAAGTAGTAGTTGAATTTGCTATGTTTG
AATTATATGTTTCAAGTGAAGTACTAGTTGAAGTATAGTTTTACGTCTCTACATTGCATCATCTATTGTAGTTGCTCTTT
TACATCTTAAATATACATCATTTGTTGGAGTTGCCCTTTTTAAAGATGCAAATGCACCTTTTGAGTTGTAATCTTTTTTC
ATCTTCTGTTTTACATGTTCAAATTTGCATCATCTATGGAAGATGCTGTAATGCAGGAAATTCCTTACTACT-AACAGGG
TGCTGTCACATTTCA---TGTGGTACGTGTGACAATGCAATCAATACGAGAGTCCACCCTCCTGTTGCTCTTATTTATGG
GTCGTGTTTGCTCTGACACCGAGCG-------------------------------------ACTGACGATGCTCTAGCC
AACACCTGTAAAAACAACACGTTACAAGATATGCTCGACCCATAACCCTTCCATCAATTCCCTACCGAAAAATATTAGTT
TTAAATATTTGTCCAGCACCATTCGTTTCGTTAGTCACATCACATCACGGCACGTCAGCATCCGTCTCTCTGATTCAGCT
TGCTCTCGTGCCAACAAAGCA-----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TCCACCCA
GACCATCTCACTCATCAGTCTCTCCCTCACCTTCCCCTCTCGCATCCAACTCCACCATGGATCCTTCCTCCCAGTCTCTA
TATAAACCCCCTCTGCCTCCAAGATTACTCAAACACGGAGCAAAGCCAAGAACTCACAAGTCACAACAACATCGCACAAT
TCGTTCTTGAACCCTCGTGGTTGTTTTCAGTTGGTTTGCTGTGATCGTAGCGATGGCGCCAGAGCGGAGGTGGTCGGGGC
TGGCGGCGGCGGCGGACGCGGCGTCGTGGTGCTGCGGGCTGGCGCTGGTGACGCTGCTGCTGGTGTCGTCGCTCCGGGCC
GGCGAGGGGGAAGAGAGCGGCGGCGGGGCGGTGGTGGTGCGCGGGGCGCGGATCGCGGCGGCGCCGCGGCGGCCGTGCGA
CGAGATATACGTGGTGGTGGAGGGGGAGACGCTGCACAGCATCAGCGACCGGTGCGGCGACCCCTACATCCTGGAGCACA
ACCCGCACGTCCACGACCCCGACGACGTCTTCCCGGGCCTCGTCATCAAGATCACGCCGCGCGCCGCCGCTGACGGCCGC
AAGTGAACGCCGCGCTGACGACGCAGCTTCCTTCCTCGCCGTCTTATTCAGCGCTGTGCGGCGGCGC-----TCGTGCCC
TCCTGGGCGGACGCGACTCGCGGACAAGAATTTGTTTCGAGCTGTGGCCGAGTGAAATGGTCGTTTGTGGTACGATCGAG
AGAGAAAGATGGATCGTTTCTGGCTGTGAATAGAAATAAAATGTTGCTCGCGGAAGATCTCCTTTTCAGTTGGCTCTCGT
TTGTTCTCAAAAGAAAAAAAAGTTGGTTCTCGTTTGGCATTTCGTTGCATATTCTTTTTTAACTTTTTCTTCAACACAGA
AGCTTGCCCGACTTTAGTGAACTGAAGCCCTTAAAACGTTTACAATAAAAATAGCACTAATAAATTGTTTTATACGTATC
CGAAGGGCCAAAAGGCACGAAGCCAAGCTGAACAAGTTGATTCTCGTTGCACAATAGAGTTGGTCTGCACTACATTGTTC
ACACAACTTCTTGTCATCCAACACGGTGTCTCAAATGTTCACAAACTAGTTGTAAAGTTGTGAGGGTTTACAGGCATCCG
GTCCTTCGTCAAGTAGGCATCCGATACTTCAAACCCAGCCAAAACCGAGACAGAGCCGTGTCTTTGGACCATTCCGAATT
GTTTTCACGCGAAAAGCCCATTTTTTTCACCCTTTTCGCTCCTATCATCGCCGTCATGCACCTAGTTCTCGCCATCCGCC
GCCATGATGGAGCCTGATGAGGATCTGATTTTGACGTCTGGCATGCCGCCGGAGCCGGAGATGGATGATCCAAAGGTGCT
GGCCGCCTGGCCGCCTGCAAGGCCAATACGGGTACACGTACCGCGCGCGGCCGCGAACAGAGGAGAGGGGAGGTAGCAGT
TGCAGCGACCGGTCAGTTGCCACCTCCTAAGGCCAACTCCACCGCGCGACCTCAAACGAACGTCCGTTTTGTCCGGATTC
TGTCCATTTGGGTAGGAATTTGGGGTCGTATCCGGACGTGTCCTGAGAAGC
>chr1D_447
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TGTAATGCAGGTAAGTCCTTACTAGCTAACAGCC
TGATGTCACACTTCATCATGTAGTACGTGTGACAATGCAATCAATACGAGAGTCCACCCT---GTTGCTCTTATTTATGG
GTCGTGTTTGCTCTGACACCGAG--------------------------------------------CGATGCTATAGCC
AACACCTGTAAAAACAACACGTTACAAGATGTGCTCGACCCATAACCCTTCCATCAATTCCCTGCTCAAAAATGTGAATT
TAATC--TTTGTACGGCACTATTTTTCTCGTTAGTCACATCACATCACAACACGTCAGCATCGGTCTCTCTGATTCAGTT
TGCTCTCATGCGAGCGAAGCG-----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TCCACCCA
AACCATCTCACTCTCGGTT-TCTCCCTCACCTTCCCCTCTCGCATCCAACTCCGCCATGGATCCTTCATCTCGGTCTCTA
TATAAACCCCCTCTGCCTCCAAGATTACTCAAACACGGAGCAAAGCCAAGAACTCACAAGTCACAACAACATCGCACGAT
TCGCTCTTGAACTCTCGTAGTTGTTTTTAGTTGGTTTGCTGTAATCGTAGTGATGGCGCCGGAGCGGAGGCGGTCGGGGC
TGGCGGCGGCGGCGGACGCGGCGTCGTGGTGCTGCGGGCTGGCGCTGGTGACGCTGCTGCTGGTGTCGTCGCTGCGCGCG
GGCGAGGGGGAAGAGAGCGGCGGCGGGGCGGTGGTGGTGCGCGGCGCGCGGATCGCGTCGGCGCCGCGGCGGCCGTGCGA
CGAGATATACGTGGTGGTGGAGGGGGAGACGCTGCACAGCATCAGCGACAGGTGCGGCGACCCCTACATCCTGGAGCACA
ACCCGCACGTCCACGACCCCGACGACGTCTTCCCGGGCCTCGTCATCAAGATCACGCCGCGCGCCGCCGCTGACAGCCGC
AGGTGAACGCCGCGCTGACGACGCAGCTTCCTCGCCGTC-------TTCAGCGCTGTGCGGCGCTCGTATGATCGTATCC
TCCTGGATGGATGCGACTCGCGGACAAGAATTTGTTTCGAGCTGTAGCCAAGTGAAATGGTCGTTTCTGGTACGATTGAG
AGAGAAAAATGGATCGTTTCTGGCTGCGAATAGAAATAAAATGTTGCTCGCGGAAGATCTCCTTTTCAGTCGGTTCTCGT
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>chr1B_468
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CTAGCTAACAGCC
TCCTGTCACATTTCA---TGTAGTACGTGTGACAATGCAATCAATACGAGAGTCCACCGT---GTTGCTCTTATGTATGG
GTCGTGTTTGCTCTGACACCGAGCGACTGACGATGCTTTTTTTTTTTTTTTTTTTGCGGGGAACTGACGATGCTATAGCC
TAAACCTGTAAAAACAACACGTTACAAGATGTGCTCGACCCATAAGCCTTCCATCAATTCCCTACCCAGAAATGTTAGTT
TTATC--TTTGTCCAGCACTATTTGTTTCGTTAGTCACATCACATCACAGCACGTCAGCATCGGTCTCTCTGATTCAGCT
TGCTCTCGTGGCCACAAAGCATCCACCCACGGATCCGGCTTGCCTGTTCTCTTCCCATACTCCCATCTGTGCTCCCACTT
CATTCTACGGTTGTTCTTTTTCTTTTTCCCTTTCTAATCTAATCATCTCCCCTGATTTTAAGGGGGTGGGGCCGGACTTT
ATTTTGTTCCAATCAAATCATGCTACATATGTGGGAGCACAGATGGGCACACACGCGGGGAGCAGGCAAGTCTCCACCCA
GACCATCTCACTCATCAGTCTCTCCCTCACCTTCCCCTCTCGCATCAAACTCCACCATGGACCCTTCATCTCAGTCTCTA
TATAAATCCCCTCTGCTTCCAAGATTACTCAAACACAGAGCAAAGCCAAGAACTCACAAGTCACAACAACACCGCACAAT
TCGTTCTTGAACTCTCGTGGTTGGTTTTAGTTGGTTTGTTGTAATCGTAGTGATGGCGCCGGAGCGGAGGCGTTCGGGGC
TGGCGGCGGCGGCGGACGCGGCGTCGTGGTGCTGCGGGGTGGCGCTGGTGACGCTGCTGCTGGTGTCGTCGCTCCGCGCG
GGCGAGGGGGAAGAGAGCGGCGG---GGCAGTGGTGGTGCGCGGCGCGCGGATCGCGTCGGCGTCGCGGCGGCCGTGCGA
CGAGATATACGTGGTGGTGGAGGGGGAGACGCTGCACAGCATCAGCGACAGGTGCGGCGACCCCTACATCCTGGAGCACA
ACCCGCACGTCCACGACCCCGACGACGTCTTCCCGGGCCTCGTCATCAAGATCACGCCGCGCGCCGCCGCTGACACCCGC
AAATGAAC---GCGCTAACGACGCAGCTTCCTCGCCGTC-------TTCAGCGCTGTGTGGCGCTCGTATGATCGTATCC
TCCTGGATGGATGCGACTCGCGGACAAGAATTTGTTTCGAGCTGTAGCCAAGTGAAACGGTCGTTTCTGGTACGATTGAG
AGAGAAAAATGGATCGTTTCTGGCTGTGAATAGAAATAAAATGTTGCTCGCAGAAGATCTCCTTTTTC------------
--------------------AGTCGGTTCTCGTTT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S--S---------SS------SS
---------------------S--------------------------------------SSS-----------------
--------------------------------------------------------------------------S-----
------------------------------S-----------------------------------S------S------
---SSSS------------S---S------------------------S-------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S--S---------
--------------------------------------------------------------------------------
------------S--------------S--------------S-------S---------S---------S---------
----------------------------------------------------------------------------S--S
--------------------------------------------S------------S----------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------S-----
--------------------------------SS-SSS-SSSSSSS-----------------SSSS---------SS--
------SS---S---------------------------------S---S----------------S---------S---
-------S--------------------------------------------------------------S--S------
--SSSSSSSSSSSSSSSSSS---S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_59
---------------------------------------TTTTGGGCGCAATTCCACAG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>reverse_1640
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CGTCTTATTCAGCGCTGTGC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
