>input_sequence_82865
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATGTGCTGCTGTTGCGGCGGCGACGACCGCGACCACGAGCACGGCTGCC
GCCCGCTCGGGTTCCTGCTCGGCCTGCCCTTCGCGCTCCTCGCCGTCCTCGTCTCCATCGTCGGCGCCATCATCTGGATC
ATCGGGTACAGAACCTTTTTCTGCTTCCTCGTTCTGCGA-TTTCGCTACCG---ACCTGGCTGTTGGTCTGATGTGTGTG
ATCCGCTGGTGCGTGCTGTGTAACAGGCTGCCCATCTCGTGCATCTGCCCGTGCTGCCTGTGCGTGACGCTGCTGCTGGA
GGCGGCGGTGGAGCTCGTCAAGGCGCCGCTCCACGTCATGACGTGGTTCACCTCCAAGATACCCTGCTGA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>chr3D_1_TraesCS3D01G146400
TCAAATTTGCACGGTCCGTGACCTGTACAGTAGTCATCAAGACTCTTACCAGCTGGAGACATAATTTGCTGCTGGGAGGC
GAGGTGTTGTTGGCCTGAACTGCAATAGTTGAAGAACAATGGACAACATGGTGACCAGTTCATGTCAGTTACAGTTCAGT
GTGAAAGCCAAACGTTTCACATTCTGTGATGTATCAGCGGATATGTGTTACAGTTGACCACGATGCTATTTAAATCAATA
TAT----------------------------------------------------ACAGTTCTGAAATTCTGTCTCACTG
AGCTTTCCTCCGCCATTTTCTAGTGTTCCGATTTTGCCAGGGAGCA-TTTGAGTTTGTTGA---GTATCTGTCTGGAAAG
GAAGTGGAATAATCGAGTTGGGATGATCTGGCCAGCGGCCGTGTGTACCGG-----------AGAGACCAAACGGGCACG
TGGGAGCCGGTGGCGCAACCGCCACGGCCGATCGCACGCCGCCCA--CTTCCAACCCCGCCCGCCGTGTCATACTATGAT
TAGTCCAATGTCCCCAGACTAAACCCACCCGGTCGCGCGCCGGCACGCGTCTCCGGTCGCCGGCGTCGTCACGC-ATCCC
CCAAAATACAGCCGCCTCAGCGGTCAAACACTGACGTCGCACCAACACATCTCGTCACCGGGCCGTTGCAGCTGCCCACG
GGGTCCTTCCGGGCAGCTTCCCTGGCCATCTCGGCCGTCCGTTTGCCTACCGACGGCCCGGGATTGCCCTTGCCGGAATT
CCTCGCTGCCGCCTGCCCGCTGCGGCGCATTATTGCCGACCTTGCCGCACGCGGATAAATC-AAACTCGCCGCGCCGGAA
AGCGACCGCAGAGCCGGCCCGTCTCCTCTCCTCTCCTCCCTGACGCTATATAGCTACTCGTACTGTGTTCCCCACGCCTA
ACCACTCCGACGCGTGACAGCCGCCGGCGCCGATCTGACCAGCCTCGCTTCGCCTGCCTCGTACGCGCGCCGGGGAAAGG
GAAAGTGAAAAGGGAAGAGGATCAGGGGAAGATGTGCTGCTGTTGCGGCGGCGACGACCGCGACCACGAGCACGGCTGCC
GCCCGCTCGGGTTCCTGCTCGGCCTGCCCTTCGCGCTCCTCGCCGTCCTCGTCTCCATCGTCGGCGCCATCATCTGGATC
ATCGGGTACAGAACCTTTTTCTGCTTCCTCGTTCTGCGA-TTTCGCTACCG---ACCTGGCTGTTGGTCTGATGTGTGTG
ATCCGCTGGTGCGTGCTGTGTAACAGGCTGCCCATCTCGTGCATCTGCCCGTGCTGCCTGTGCGTGACGCTGCTGCTGGA
GGCGGCGGTGGAGCTCGTCAAGGCGCCGCTCCACGTCATGACGTGGTTCACCTCCAAGATACCCTGCTGATTCCTCGGTG
ACCAGGAACCGCTCGCTCGCCCCCCTCGCTTATGTCTTAGTCGGCGTTGCACATGTCCGCAGATTCTTGTTGTTTTTTTC
C-CCTCGAAACATATATGTTCGCAGATTGATCGGCGTATATTTCGCACCATGGCTGATGGTTCCTGCTCGTTTTCCCCTT
TGCTTCGATCGTTCCTGTGATCCCTTCCG-GATGCTTGATGATTGTGACTTCACTTTTCGTGACTGTTAGCGACTGCCTG
TAGTTCTGTTTCCGTCAGATTCTTCGGCTGTT------------ATTTGTCGGCGATTGCTATGGACACGATGTCTACCA
TGTGCTCTTGTTGATGTTGATCACTGGGCTT--CTGCCTTAAGAGTATCTA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TACAACCGGACATCGCAAATCCGCCCCCCAATCCTACTCTTTTAGAGCAACTCTAACCGGACATCGCAAATCC
GCCCCCCAATCCTACTCTTTTAGAGCAACTCTAACCGATCCCCTAAAGTTCTCTGATCTCCTAGAGGTCTATAGAGGAGT
AACATTTTACTCCTCTAATCAGTACCTAGCCGGCGTCTAAATATACTTGACGCCCGCGCGGCCGAGTAAAAACTGGTCCG
CCTCTTTCTCCCGCACTTACGGATGATTCCTTCCCGCGGCCGCTGTCCCACGCGCCGCCGTCTGTCACTTATGACTACCT
TGTCGCCGGAATGGGTTGCCAAGACCCTTTCGCCATCCCGTTGGCCACTGCTGCCAGCTTATCCCCGCCAGAAACCAACC
CTGCGCCGTCGCTTGCATCGAAAAAGAGGTTGGGGGATCTTCACCGGTCGGAAGCATCGGCTCCAACCGCGA--AAGTCC
GCCGGGGTGGCCACTGCCTATCCAACGACTGTCGATTGCCCTCCC-CCGCTTCCGCCGATGGCAAGAGAGCTAGGAAACC
TACGGCCGCGGCGTCGGCTCTCGCCGAGGGGGCCGCGAAGAAGAAGAAAAAGTTGGGGGCAGATGGTTCTTTTTTGCGTG
AGACA
>chr3B_1
TCAAATTTGCACGGTCCGTGACCTGTACAGTAGTCATCAAGACTCTTACCTGCTTGAGGCATAATTTGCTGCTGGGAGGC
GAGGTGTTGTTGGCCTGAGCTGCAAGAGCCGAAGAACAATGGACAAAGT-GTAACCAGTTCATGTCAGCTACAGTTCAGT
G-GAAGGCCAAAAGTTTCACATTCTGTGATGTATCAGCGGATATGTGTTACAGTTGACCACGATGCTA-TTAAATCAATA
TATAGGATATTGTCGATCCGATCTGATCCCTTGTCACCCTGAAAGTTCAAGCTTTACAGTCCTGAAATCCCGTCTCACTG
AGCTTTCCTCTGCCATTTTGTAGTGTTCCGATGTTGTCAGGGAGCA-TTTGAGTTTGTTGAGTAGTATCTGTCTGGAAAG
GAAGCGGAATTATTGAGTTGGGATGAACTGGCCAGCGGCCGTGTGTACCGGCTGACGGCTGGAGAGACCAAACGGGCACG
TGGGAGCCGGTGGCGCAACCGCCACGGGCGATCGGTCGCCGCCCGTTCTTCCAACCCCGCCCGCCGTGTCATACTGTGAT
TAGTCCAATGCCCCCAGACTAAACCCACCCGGTCGCGCGCCGGCACGCGTCTCCGGTCGCCGGCGTCGTCACGTTATCCC
CCAAAATAGAGCCGCCTCAGTGGTCAAACACTGACGTCGCACCAACGCATCGCGTCACCGGGCCGTTGCAGCTGCCCAA-
GGGTCCTTCCGGGCAGCTTCCGTGGCCATCTCGGTCGTCCGTTCGCCTACCGACGGCCCGGGATCGCCCTTGCCGGATTT
CCTCGCTGCCGCCTGCCCACTGCGGCGCATTATTGCCGACCTTGCCGCACGCGGATAAATCAAAACTCGCCGCGCCGGAA
AGCGACCGCAGAGCCGGCCCGT-----CTCCTCTCCTCCCTGACGCTATATAGCTACTCGTACTGTGTTCCCCACGCCTA
ACCACCCCGACGCGTGACAGCCGCCGGCGCCGATCTGACCAGCCTCGCTTCGCCTGCCTCGTACGCGCGCCGGGGAAAGG
GAAAGTGAAAAGGGAAGAGGATCAGGGGAAGATGTGCTGCTGTTGCGGCGGCGGCGACCGCGAGCACGAGCACGGCTGTC
GGCCGCTCGGGTTCCTGCTCGGCCTGCCCTTCGCGCTCCTCGCCGTCCTCGTCTCCATCGTCGGCGCCATCATCTGGATC
ATCGGGTACGTTTCCTCCTCCTCC-TCCTCGTTCCGCGCGATTTGCCACCGCCAACCTGGCTGTTGGTCTGATGTT----
------TGGTGCGTGCTGTAACACAGGCTGCCCATCTCGTGCATCTGCCCGTGCTGCCTGTGCGTGACGCTGCTGCTGGA
GGCGGCGGTGGAGCTCGTCAAGGCGCCGCTCCACGTCATGACGTGGTTCACCTCCAAGATACCCTGCTGATTCCTCGCTG
ATCAGGGACCGCTCGCTCGCCCCCCTCGCTCATGGCTTAGTCGGCCTTGCACATGTCCGCAGATTCTTGTTGTTTTTTTC
A-CCTCGAAAC--ATATGTTCGCAGATTGATCGGCGTATATTTCGTACCATGGCTGATGATTCCTGCTAGCTTCCCCCCT
TGGTTCGATCGTTCCTGTGATCCCTTCCGCGATGTTTGATGATTGTGACTTTACTTCTCGTGACTGTTAGCGACTGCCTG
TAGTTCTGTTTCCGCCAGATTCTTCGGCTGTT------------ATTTGTCGGCGATTGCTATGGACACGATGTCTACCG
TGTGCTCTC-TTGATGTTGATCACTGGGCTTTTCTGCCTTAAGAGTATATCTGGCCATGGGCCGGGCCGGGCCGGGCTTG
GGCCAGGCCTAAAAAAGCCCACAGCAAAAAAATGAGGCCCAGGCCCTCCCAGGCCCTACCATCGGGCCTACTTTTCAAGC
CCAAGCCTGGCCCATCTGGTAATAAGCCCTAAAAAGCCATTAGGGCTTAGGGTAGTGGCCCGGGCCTCTTCCTTAAAATG
CTAATATGCCAAGCCCAAGCCCGTCCAGGCCCTGCTTGTGGCTCAAAACTCAGACCCAAGCCCGGCCCACGGGCAAGCCC
ATCGGGCCTAGGCCCTGGATTTTAGGGCAGGGCCTGGGTGGGCCGACAGGGCCGTGCCTCAGATGGCCAGGACTACTTAA
GAGTATCTACAACCGGACATCGCAAATCCGGCCCCCAATCCTGCTCTTTTAGAGCAACTCTAGTCGATCCCA--------
---------------------AGAGCAACTCTAGTCGATCCCCTAAAGGTCTCTGATC-CCTAAAGGTCTACAGAGAAAT
AAAATTTCACTCCGC--------ACTTAGCTGGAGTCTAAATATACCCGATGCCCGCGCTGCCGAGTAAAAACTGGCCCG
CCTCTTTCTCCCGCATTCGCTGCTGCTTCCTTCCCGCCGTCATTGCCCCACGCGCCACCGTCGC-CACTAATGACTGTCC
CGTCGCCGAAATGGGTTGCCAAGACCCTTTCGCCACCCCGCTGGCCACTGCCGCCAGCTTGTCCCCGCCGGTAACCAACC
CTGCGCTGTTGCCCGCACCG-AAAAGAGGTTGGGGAATCTTCACTGGTCAGAAGCATCTGCTCCAACCGCGACCAAGTCC
GCCGTGGTGGCCACTGCCTCTTCGACGACTGTCGGCTGCCCTCCCGCCGCTCCCGCCGATGGCAACAGAGCTAGGAAACC
TACGGCCGCGGCGTCGGCTCTCGTCGAGGGGGCCGCGAAGAAGAA---AAAGACAGGGGCATATGGTGTCTTTTTT----
-----
>chr3A_244
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------ACAGTTCTGAAATTCTGTCTCACTG
AGCTTTCCTCTGCCATTTTGTAGTGTTCCGATGTTGTCAGCGAGCATTTTGAGTTTGTTGA---GTTTCTTTCTGGAAAG
GAGGTGGAATTATCGGGTTGGAATGATCTGGCCAGCGG---TGTGTACCGGCTGCCGGCTGTAGGCTCCCAACGGGCACG
TGGGAGCCGGTGGCGCGGCCGCCACAGGCTATCGTTCGCCGCCCA--CTTCCAACTCCGCCTACCGT-------------
--GTCCAATGTCCCCAGACTAAACCGACCCGGTGTCGCGCCGGCACGCGTCCCCGGTCGCCGGCGGCGTCACGC-ATCCC
CAAAAACAGAACCGCCGCACCGGTCAAACACTGACGTCGCACCAACACATCTCGTC--CGGGCCGGTGCAGCTGCCCAC-
GGGTCCTTCCGGGCAGCTTCCCGCGTCATCTCGGCCGTTCGTTTGCGTACCGACGGCCCGGGATCGCCCTTGCCGGATTT
CCTCGCTGCCGCCTGCCCACCGCAGCGCATTATTGCCAGCCTTGCCGCACGCGGATAAATCAAA-CTCGCCGCGCCGGAA
AGCGACCGCAGAGCCGGCCCGT-----CTCCTCTCCTCCTCGA---TATATGACCACCAGCACTGTGTTTCCCACGCCTA
ACCACTCCGACGCGTGACAGCCGCCGGCGCCGATCTGACCAGCCTCCCTCCGCCTGCCTCGCACGCGCGCCGGGGAAAGG
GAAAGGGAAAGGGAGAGAGGATCAGAGGAAGATGTGCTGCTGTTGCGGCGGCGGCGACCGCGACCACGACCACGGCTGCC
GGCCGCTCGGGTTCCTGCTCGGCCTGCCCTTCGCGCTCCTCGCCGTCCTCGTCTCCATCGTCGGCGCCATCATCTGGATC
ATCGGGTACGTTTCCTCCTCCTCC-TCCTCGTTCTGCGA-ATTTGCCACCACCAACCTGGCTGTTGGTCTGACGT----G
ATCCGCTGGTGCGAG--------CAGGCTGCCCATCTCGTGCATCTGCCCGTGCTGCCTGTGCGTGACGCTGCTGCTGGA
GGCGGCGGTGGAGCTCGTCAAGGCGCCGCTGCACGTCATGACGTGGTTCACCTCCAAGATACCCTGCTGATTCCGCGGTG
ACCAGGGGCCGCTCGCTCGCCCC-CTCGCTCATGGCTTAGTCGTCGCTGCACATGCCCGCAGATTCTTGTTGTTTTTTCC
CACCTGGAAACATATATGTTCGCGGATTGATTGGTGTATA-TTCGTACCGTGGCTGATGATTCCTGCTCGTTTCCCCCTC
TGGTTCGATCGTTTCTGTGATCCCTTCCG-GATGTTTGGTGATTGTGACTTTACTTTTCGCGACTGTTAGCGACTGCATG
TAGTTCTGTTTCCGTCAGTTTCTTCGGCTGTTGGTTATTCACTTATTTGTCAGCGATTGCTATGG--ACGATGTCTACCG
TGTGCTCTTGTTGAT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>SNPs
--------------------------------------------------S---S---S---------------------
------------------S------S--SS----------------SS-S--S---------------S-----------
-S---S------S-------------------------------------------------------S-----------
--------------------------------------------------------------------------------
----------S--------S------------S---S-------------------------------------------
----------S---------------------------------------------------------------------
---------------------------S------SS---------------------------------------S----
--------------------------------------------------------------------------------
--------S----------------------------------------------------------------------S
----------------------------------------------------------------S------------S--
------------------S-------------------------------------------------------------
----------------------SSSSS-----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
-S------------------------------------------------------------------------------
---------SSSS---SS-S--S-S---------------S--S--S----------------------------SSSS-
-------------------SSS----------------------------------------------------------
--------------------------------------------------------------------------------
------S-----------------------S---S---------------------------------------------
---------------------------------------------S-------------S-------------S------
--S-------------------------------S----------------S----------------------------
-------------------------------------------------------------------------------S
------------------------------------------------S-S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S-----------S-------------------SS--SS-SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS------------SS-------------S---------S----S-------S----S-S-
--S----S-----S-SSSSSSSS--S----S--S------------SS--S--------S----------------S---
---------------S-SS-S-S--S-----------S-S-SS--S----------S-----SSS----S------SS-S
S-------S--------------------------S----S----------S--------S--------S-S--------
------S--S--SS---S--S--------------S--------S----S--------S---------------------
----S--------------S-S-S----------SS---------------S-------------S--------------
-----------------------S---------------------SSS----SSS------S-----SSS-----SSSSS
SSSSS
>forward_99
-------------------------------------------------------------------------------C
GAGGTGTTGTTGGCCTGAA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>reverse_1475
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TCTTAGTCGGCGTTGCACAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
