>input_sequence_82855
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-----------------------ATGCAGAGGCCGGTGAGCACCCCGTCGTTCCCCGTCTTCGCGGACGAGGAGGGGGCG
GAGGACCTGGAGGCCAAGCCGGAGAAGGCGCCCGCCGTCCGGCCGTCGGCGGCCACGGAGCGGTCCGTCCACCTCGTGCC
GCTCGTCGTCGTGCTCTGCTTCCTCGTCCTCTTCCTCTGCTCCCACGTCCCCTCCCCTTCTGGTACGTGCGTCGCGTGTG
TATGCATTCAG----TGCAGCAAACGTCTTTATACAGCTGTGCTGCTGATTCTGAGCTCTGCATTATGCTGCGTTGTTTT
TTG-----CCTGCAGATATGTCGAGCTTC---GGAGGGAAGGCCGGGGGCCGG-AAGCCCAAGCTGCTCTGA--------
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>chr2D_1_TraesCS2D01G444100
AAACTGAAAACAAGAGAGAAGTCAATATTCAGCATGAG--GTGGGCTGAATCAAAAAAGAAAAATTGATGAGCAAAC---
-----ATATTTCGCATCCATTGGAGGCTTTA-----------------------------TTAGAGGAAGCGAGCAACGG
CCCAAACTAACATCATCAATCTGCTCTAGGCAAGTGACACGAGAATGAACTTAGCCTAGAGCACTCGGTTGATCGGCGGA
CCTGCAGATAGCAGAACGGTAGTAGCAGTTGAGGTGAAGAATGAACAGATACGC-----AGCGGTGCAGAGATTCAGCAC
CCGCACGGGACGTCGGGACCCAGGTTCAAACTTCAAAGCAGCACGTGACGAGAATCCCCGGTCGCCGGCGGCCAGCAAAG
GACATCTGGG--------------CGCCTTTAATGTGCT-CGCGACCTGTGAACCCGACGCGGCGACAAAGCGGCCAGCA
CGATTGCAGAGGAAGCCAGGGCCACACACAC---------------------------------GACGACGACACCA---
----------------------CATCGTCGTGTTCCTGCGTCGCAGCTCGTCTCAAGCCCTGCCTGCCCGTCTCAGGTTC
AGGTTCAGGTTCAGGTGCAGGTTCAGCACGCACTGCTTGCGCGTCGTTGTGACCGGCAGCCACACTTGGCCAC-------
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-------------------------------------------------TGGTG--CAGCGCAGCTCTGCACGCCCAACG
AACCTGTAGCCCTGTACTTGCTGGTTGCTGCAGCGGACATGTGTTCTGGACAAGTTACCTGGAGCTGAATCTCCC-----
TTTGGGCCTTTGCTTCAGAAAATGGAAAGGGCCCCCTTACTTTCTTTCC------ATCG--GATGCGCCTCGC-----G-
--TACTCAAAGCGCCAAACTGTTG--TTAGCGCTAAGCAAA-TCGAAGCACACTCAA-AGCCAACACGTGAGATTCAGAG
AAGCGTAAG--AAAAGTTAGAAACAGTAGTAGTGCTG-----------TCTCGGAATTCGGTGGCCATAAGAAGTACGGG
AACTCGGTGAGTATCAGCCAGCGTGCACGTCCCGATCCGAGCGTA-----TAGCTTTCCCTCCCGGG----CGGCGTGTA
GGTATAGTCG-AGAGTCGAGAGAATGCAGAGGCCGGTGAGCACCCCGTCGTTCCCCGTCTTCGCGGACGAGGAGGGGGCG
GAGGACCTGGAGGCCAAGCCGGAGAAGGCGCCCGCCGTCCGGCCGTCGGCGGCCACGGAGCGGTCCGTCCACCTCGTGCC
GCTCGTCGTCGTGCTCTGCTTCCTCGTCCTCTTCCTCTGCTCCCACGTCCCCTCCCCTTCTGGTACGTGCGTCGCGTGTG
TATGCATTCAG----TGCAGCAAACGTCTTTATACAGCTGTGCTGCTGATTCTGAGCTCTGCATTATGCTGCGTTGTTTT
TTG-----CCTGCAGATATGTCGAGCTTC---GGAGGGAAGGCCGGGGGCCGG-AAGCCCAAGCTGCTCTGACGCGGACC
AAGGAAGGAGGCGACCG--------TGAGAAGAGCTCAAGAACTGAGCAAGTGATATGTCAAGGAAATACTAGATGTGAA
CGTTTTCTGTTTTCTTTCTTGATCTCAGCTGTGTTAGACAGTAA-GCTGTACCGATCTCGCTGCAGCAATAATAAAGC--
GCACACACAACGCAATAGTAC--TGCTCTGATGGTTCTCATCATGTTTGCTTT-----CATGGTCCGGTGCCATTTGGTC
ACTCGTAATTGTCCGGTGAACAAACCTCTGACCATTTCTTCGTTGAAGA-------GGGTATAAAATGTGGCCTACTTCT
ACAATACAACCTCGAC-AAATGTCCGGTGTCTGATGTTGCCACGCGGT-GCACTTCCATTCGGCCGCTCTTCACAGCACA
GCACAACA--------CAAAGCATGACAGAAG-TGTTTTCAGCAATGAATGA-------------AGCACCCTACCAAGG
GAACTCTTGCTTGCACGCCCTCACTTCTGGCTAGTTTTCTTTTTTCGAGAAATTTCTGGCTAGTTAATTAGGCAATACAA
GTCTTCCTATCAGTGGTGAAATTATCCATTCAGTCCAATTGGGCCACAAAAA-TAACTGGGCTTATGACACATTCACTGA
TCTATCAGTTTTGTCCTCTCAGAAGAAGAAGAAAACCATTCTCAAAAAAAAGAAACATCAAAAAAAGAGAAGAAAACCCC
TCAAAAAAAAGAAAAAAAAATCAGAGAAGTC----------------------------CAAGTGCATGATAATATTGTT
TGATTAATTAAAATGGCTGCTACAAATTCCAAACTCTTTCGGTCCCAATAAATTTCAACCTTCAAACAGGTGAATCACAA
TACAGCAACCACAACGCTACAGCCTGAATTAAACAACCCATCTC--ATGTCTATTTACATTCATGCATCAGCCAGATCAT
CATAGTATCAATCCCTGCGCAGGTTCCGGTTTCTT------AGGAGCAGCGGGCGGTGGTGGAGACGCATCGCTGGAATC
CTCTACTGTAATGGGGAAAACTGCAGCGGTAGATATGG
>chr2B_1
AAACTGAAAACAAGAGAGAAGTCAATATTCAGCGTGAGTGGTGGGCTGTATCAAAAAAGAAAAAGAAATGATCAGCAAAC
ATGTAATATTTCGCATCCATTGCTCTACGCAACGGCCCAAACATGTACTGTAATATTTTGTTAGAGGAAGCGAGCAACGG
CCCAAACTAACATCATCAATCTGCTCTACGCAAGTGACACGAGAATGAACTTAGCCTAGAGCGCTCGGTTGATCGGCCGA
CCTGCAGATAGCAGAACGGTAT---CAGTTGAGGTAAAGAATGAACGGATACGCAGCGGAGCGGTGCAGAGATTCAGCAC
CCGCACGGGACCCAGG---------------TTCAAAGCAGCACGTGACGAGAATCCCCAATCGCCGGCGGCCAGGAAAG
GACATCTGGG--------------CGCCTTCAATGTAGT-CGCGACTTGTGAACCCGACGCGGCGACAAAGCGGCCAGCA
GGATTGCGGAGGAAGCCAGGGCCACACACGC---------------------------------GACGACGAC---GACA
CCACCAGGACGGTCCCTTTCACCATCGTCGTGTTCCTGCGTCGCAGCTCGTCCGAAGCCCTGCCTGCCCGTCTCAGGTTC
AGGTTCAGGTGCAGGTGCAGGTTCAGCACGCACTGCTTGCGCGTCGTCGTGACCGGCGGCCACACTTGGCCACCTGGGTG
CGCAGCTGCTTTCAACAGTTGCACGCTGAACGAACGTACCTGCTGCAGCCAACATGTGTCCTGAACAAGAAATTACCTGG
AGCTCACAGCAAGCTTGCCTGCGGATCCACCCATCCCATTCCCACTGACTGAAGCCCTGCCCAGCCAGCCCGTCTCAGGT
TCAACTCACACCGCCTCGACGTCGTTGTGACCGGCAGCCACACGGCCACGCTTGGCCAGCACAGCTCTGCACGCCCAACG
ACCCTGTAGCCCCGTCCTC-------GCTGCAGCGGACATGTGTTCCGGACAGGTTACCTGGAGCTGAATCTCCTCCCTT
TGGACCT-TTTGCTTCAGAAAATGGAAAGGGCTCCCTTACTTTCTTTCC------ATCGGAGAGGCGCCTCGC-----G-
--TACTCAAAGCACCAAACTGTTG--TTACTGCTAAGCAAAATCGAGGCACACTCAA-AGCCAACGCGTGAGATTCAGAG
AAGCGTTTTTAAAAAGTTTGAAACAGTAATAGTAATG-----------TCTCGGAATTCGGTGGCCATAAGAAGTACGGA
GACTCGGCGAGTATCAGCCAGCGTGCACGTCCCAATCCGAGCGTA-----TACCTTTCCCTCCCGGGCTCCCGGCGTGTA
GGTATAGTCG-AGAGTCGAGAGAATGCAGAGGCCGGTGAGCACCCCGTCGTTCCCCGTCTTCGCGGACGAGGAGGGGGCG
GAGGACCTGGAGGCCAAGCCGGAGAAGGCGCCCGCCGTCCGGCCGTCGGCGGCCACAGAGCGGTCCGTCCACCTCGTGCC
GCTCATCGTCGTGCTCTGCTTCGTCGTCGTCCTCCTCTGCTCCCACGTCCCATCCCCATCTGGTACGCGCGTCGCGTGTG
TAGGCATGCAGTGCATGCAGCAGACGTCTTTATACAGCTGTGCTGTTGATTCTGAAATCTGCATTATGCTTCGTTCTTTT
------GGTCTGCAGATATGTCGAGCTTT---GGAGGGAATGCTGGGGGCCGGAAAGCCCAAGCTGCTCTGACGCGGACC
AAGGAAGGAGACGATCGTGACAGTAGTCG------TCAAGGACTGAGCCAGTGATATGCCAAGGAAAAACT---------
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>chr2A_307
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------------------------------CTTCAAAGCCGCACGTGACGAGAATTCTCGGTCGCCGGCGGCCAGGAAAG
GACATCTGGGAACGACCCCGCGCGCGCTTTTAATGTACTCCGCGACCTGTGAAGCCGACGCGACGACAAAGCGGCCAGCA
GGATTGCAGAGGAAGCCAGGGCCACACACACCACCACCACCACCACGACGACGACGACGACGACGACGACGACACCGACA
CCACCAGGACGATCCTTTTCACCATCGTCGTGTTCCTGCGTCGCAGCTCGTCTCAAGCCCTGCCTGCCCCTCTCAGGTTC
AGGTTCAGGTGCAG------GTTCAGCGCGCACTGCTTGCACGTCGATGTGACCGGCGGCCACATGG-------------
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---------------------------------------ACACGGCCACTGGTG--CAGCACAGCTCTGCACGCCCAACG
AAC------------------------CTGCAGCGGACATGTGTTCTGGACAAGTTACCCGGAGCTGAGT---CTCCCTT
TGGAGACCTTTGCTTCAGAAAATGGAAAGGGCCCCCTTACTTGCTTTCCCTTGTACT-G--GAGGCGCCTCTC-----G-
--TACTCAAAGCACCAAGCTGTTG--TTGGTGCTAAGCAAAATCGAGGCACGTGATCCAGCCGACGCGTGACATTCAGAG
AAGCGTAAA--AAAAATGCAGATATAGCCGGCGTGTTAGTGCTACGTATCTCGGAATTTGACGGCCATAATATAAG----
--------AAGTATCAGCCGGCTTGCACGTCCCAATCCGAGCGTAGCGTATACAGTCCCAGCC-----------------
-GTGTAGTCG-AGACACGAGAGGATGCAGAGGCCGGTGAGCTCCCCGTCGCTGCCCGCTTTCGAGGACGAGG------GG
GAGGACCTGGAGGCCAAGCCGGAGAAGGCGCCCGCCGTCCG---------------------GTCCGTCCACCTCGTGCC
GCTCATCGTCCTGCTCTGCTTCGTCGTCCTCTTCATCTGCTCCCACGTCCCCTCCCCCTCTGGTACCCGCGTCGCGCGTG
T----GTGTGATACATTCATCAAACGTCTTGATACAGCTGCGCTGCTGACTCTGAGCTCTGCATTATGCTGCGCTTTTTT
CTTTTTGGTCTGCAGATATGTCGAGCTTC---GGAGGGAAGGCCGGGGGACGG-AAGCCCAAGCTGCTCTGACGCGGACC
AAGGAAGGAGACGATCA--------TGACAAGAGCTCAAGGACTGAGGACGCGATATGCCAAAA-------AGATGTGAA
CGTTTTCTGCTTTCTTTCTTGATCTCAGCTGTGTTAGGCAGTAA-GCTGTACTGATCTCGCTGCACCGATAATAAAAC--
ACATACAGAACGCAATAGTGC--TGCTCTGATGATTCTCATCATGT-TGGTTT-----CATGGTCCGGTGCAATTTGGCC
ACTCATAATTGTGTAGTGAACAAACCTCTCACCATTTCCTCGCTGAAGA-------GGGTATATAATGCAGCCTAGTTCT
ATCACCGTG-GTCGACAAAATGTCCGGTGTCTGATGTTGCCACGTGGTCGAACTTCCACTCGGCCACTCTTCACAGCACA
GCACAACAAATTAAAACAAAGAATAAAAGAAGTTGTTTTCAGCAAAAGAATGAAAGCATGCCAGCAGCACTCTACCGAGT
GAACT----CTTGCACGCCCACACTTCTGGCTCCA--AAAAAAAC------------------TTAATTGGGCAACACAA
GTATTCCTAACAGTGGTGGAATTATCCATTCAGTCCATTTGGGCCACAAAAAATAACTGGGCTTTTGACACATTCACTGA
TCTATCAGTCTTGT----------------------------------------------------------AAAAACTC
TGGAGAAGAAAAAAAACACATCAGAGAGGTGAATATCATACGCAAACATTGTGACACTGCAAGTGCATGATAATATTGTT
TGATTAATTAAAATGGCTGTTACAAATTCCAAACTCTTTCGGTCCCGATAAATTTCAACCTTCAAACAGGTGAATTACAA
TACAGCAACCACAACGTTGCAGCGTGAATTAAACAACCCATCTC--ATGTCTATTTACATTCATGTATCAGCGAGATCAT
CATAGTATCAATCCCTGCGCAGGTTCCGGTTTCTTAGGAAGAGCAGCAGCGGGTGGCGGTGGAGACGCATCACTGGAATC
CTCTACTGTAATGGGGAAAACTGCAGCGGTAGATATGG
>chr2A_651
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-------------------------TGCTGCAGCCAACATGTGCACTGGACAAGTTACCTGGAGCTGGAGCTCCTTTTGG
TTTGGACCTTTGCTTCAGAGAATGGAAATGGCCCCCTTTCTTTCTTTCCCTTGGACTTG--GAGGCGCCTCAC-----GT
ACTACTCAAAGCGCCAAACTTGTTGTTTACTGCTAAGCAAAATCG-------------AGCCAACGCGTGAGATTCAGAG
AAGCGTACCCAAAAGAAAGTGCA-----------CTG-----------TGACGGAATTCGGCGGCCATAAGAACTACGGT
GGCTCGGCAAGTATCAGCCGGCGTACACATCCCAATCCGAGCGTA-----TACCTTTCCCGCC-----------------
-GTCTAGCCAAAGACTCGAGAGAATGCAGAGGCCGGTGAGCACCCCGTCGTTCCCCGTCTTCGCGGACGAGGAGGAAAGG
GAGGACCTGGAGGCCAAGCCGGAGAAGGCGCCCGCCGTCCGGCCGTCGGCGGCGACGGAGCGGTCCGTCCACCTCGTGCC
GCTCATCGTCGTGCTCTGCTTCGTCGTCCTCTTCCTCTGCTCCCACGTCCCCTCCCCCTCTGGTACCCGCGTCGCCTGTG
CGTAACTAC-------GCAGCAAACGTCTTGATACAGCTGTGCTGCTGATTCTGAGCTCTGCGTTATGCTGCGTTTTTTT
TTA-----TCTGCAGATATGTCAAGCTTC---AGAGGGAAGGCCGGGGGCCGG-AAGCCCAAGCTGCTCTGACGCGGACC
AAGGAAGGAGACGATCGTGACAGCCTGACAGGAGCTGAAGAACTGAGGACGCGATATGCCAAAA-------ATATGTGAA
AGTTTTCTGCTTTCTTTCTTGATCTCAGCTGTGTTAGACAGTAA-GCTGTACTGGTCTCGCTGCACCAATAATAAAGCGT
GCATACAGAACGCAATAATT-----------------------------GTGTGGTTTCATGG-CCGGTGCCATTTGTCC
ACTCATAATTGTGCGGTGAACAAACCTCTCATCATTTCTTCGTTCAAGA-------GGGTATAAAATG------------
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>chr2B_701
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TTTGGACCTTTGCTTCGGAAAATGGAAAGGGCGGGC-TCCTCCCTCTCC------CTTG--GAGGCGCCTCACGTACAGT
ACTACTCAAAGCGCCAAACTGTCG--TTAGCGCTAAGCAAA-TCGAAGCATACTCAA-AGTCAACGCGTGAGGTTCAGAG
AAGCATAAG--AAAAGTCAGTAGAAATTGTAGCGTTGCC--------ATCTCGGAACTCGGTGGCCATAAGAAGTACGGA
GACTCGGCAAGTATCAGCCAGCGTACACATACCAACCCTGACGTG-----TAGTCA------------------------
---GTACTAG-AGAGTCGAGAGAATGCAGAGGCCGGTGAGCACCCCGTCGTTCCCCGTCTTCGCGGACGAGGAGGGGGCG
AAGGACCTGGAGGCCAAGCCGGAGAAGGCGCCCGCCGTCCGGCCGCCGGCGGTGACGGAGCGGTCCGTCCACCTCGTGCC
GCTCATCGTCGTGCTCTGCTTCGTCGTCCTCTTCCTCTGCTCCCACGTCCCCTCCCCGTCGGGTACGTGCATCGCGCGTG
T----ATGCAATGCATGCAACGGACGTCTTTATACAGCTGTGCTGCTGATTCTGAGCTCTGCATTTTGCTGCGT--TTTT
------GGTCTGCAGATATGTCGAGCTTCGGAGGAGGGAAGGCCGGCGGCCGG-AAGCCCAAGCTGCTCTGACGCGGACC
AAGGAAGGAGACGGTCGTGACA--------AGAGCTCAAGAACTGAGCAAGTGATATGTCAAGGAAAAAA---ATGTGAA
CGTTTTCTGTTTTCTTTCTTGATCTCAGCTGTGTTAGACAGTAAAGCTGTACTGATCTCACTGCAGCAATAATAAAAC--
GCATACAGAACGCAACAGTATAATGCTCTGATGGTTCTCATCATGT-TGGTTTGGTTTCATGGTCCGGTGCCATTTGGTC
ACTCGTAATTGTGCGGTGAACAAACCTCTGACCATTTCTTCGTTGAAGACTGAAGAGGGTATAAAATGCGGCCTACTTCT
ACAACCGTG-CTCGAC-AAATGTCCGGTGCCTGATGTTGCCATGCGATCGCACTTCCATTCGGCCACTCTTCACAGCAGA
ATAAATAAAC-----ACAAAGCATAAAAGAAGTTGTTTTCAGCAAAAGAATGAA-GCATGCCAGCAGCACTGTACCAAGG
GAACT----CTTGCACGCCAACACTTCTGGCAACAACAAAAAAAC------------------TTAATTAGGCAATACAA
GTACTCCTATCGGTGGTGGAATTATCCATTCAGTCCATTTGGGCCGCAAAAAATAACTGGGCTTATGACCTATTCACTGA
TCTATCAGTCTTGT----------------------------------------------------------AAAAACTC
AGGAGAAGA-AAAGAACACATCAGAGAAGTGAATATCATACGCAAACATTTTGACACCGCAAGTGCATGATAATATTGTT
TGATCAATTAAAATGGCTGCTACAAATCCCAAACTCTTTCGGTCCTGATAAATTTCAACCTTCAAACAGGTGAATCACAA
TACAGCAGCCACAACGCTACAGCCTGAATTAAACAACCCACCTCATATGTCTATTTACATTCATGTATCAGCCAGATCAT
CATAGTATCAATCCCTGCGCAGGTTCCGGTTTCTTGGGAAGAGCAGTAGCAGGCGGTGGTGGAGACGCATCGCTGGAATC
ATCTACTGTAATGGGGAAAACTGCAGCGGTAGATATGG
>SNPs
---------------------------------S--------------S---------------SSS----S--SSS---
----------------------SSSSSSSS--------------------------------------------------
----------------------------S---------------------------------S--------------S--
---------------------SSSS----------S----------S---------------------------------
-----------SSS--SSSSSSSSSSSSSS---------------------------------------------S----
------------------------------------S-------------------------------------------
S---------------------------------------------------------------------------S---
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----------S----------------------------------------------S----------------------
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------------------------------------------------------------S-------------------
------------S--S--SSSSSSS-------------------------------------------------S-----
-----S---------------------------------------------------------S----------------
-----------------------------------------------------------------S--------------
-------------------------------------------------------------------------------S
S------S-------------------------S----------------------------------------------
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----S-----------------S----------------------------------S----------------------
-------S-------------------------------------------------------------------S----
--S-----S-----------------------------------------------------------------------
----------S---S----------------------------------------------------S------------
----------------------------------------------------S---------------------------
---S---S--------------------------------------S--S------------------------------
------------S-------------------------------------------------------S-----------
----SSSSSS-------------------------------------------------------S--------------
------------------------S-S------------------SSS-SSS------------------S---------
-----SSSS-----------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
--S---------------S------------------S------------------------------------------
---------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-S-
-SS-S--S--S-----S-S-----------S-------------------------------------------------
----------------------------------------------S---------------------------------
-----------------------------------------------------------------S--------------
-------------------------------------------S------------------------------------
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>forward_984
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----TGTAGCCCTGTACTTGCTGG--------------------------------------------------------
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>reverse_2090
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---------CCTCGACAAATGTCCGGTGT---------------------------------------------------
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