>input_sequence_82839
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-----------------------------------------------ATGGGCGCGAGCCTCCTGCAGGCGGTGGCGGCG
CTGGTGAGCACGTGCACGCGGCGGCTGCAGCGGGCGGCGAGGAGGATGGGCGCCGGCAACGGCAACGGCAAGCCGGCCGT
GGCGCCGTGGAGGAAGGCCTTCTCGCTGCCGACGGGCAAGGGGAAGGCGGCGGGGCGGGAGGAGGAA---GAGGGCGGGC
TGTGGAGGAAGGAGATACTCATGGGCGAGCGCTGCCAGCCGCTGGAGTTCTCCGGGGTCATCTACTACGACGCCGACGGA
CACCGCCTCGCGCAGCCGCCCCGGTCGCCCATGCGCAGCCCGCTCCCGGCGTCCTTTAAGCTCGCTGCCAACGCCGGCGT
CTGCTAG-------------------------------------------------------------------------
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>chr7B_1_TraesCS7B01G194900
TGCAGCAGCAGCAGCAGTTTCCTGATGCTAAATTGCTAATATGATCATATCAATTTCCGAGGAGCCGTAGTATCCTACCC
CCTATTTAAAAAATGGCAGACAATTTGCGTGCTCAGGAAAAAGAACATCACCTCTGACGGCTGATCCTGGATTCTTTTGG
TGCCGCCGCAATTTGCAATGCTACGCTGATCGACTTGCGCGTTTTAGTCGGCTCACACAAAATCGAAAGTGATGGGCGTT
TAGCGATATGGTACGTGAAAGGGCACGTAGGTTAAATTACTTCG---------GGGTCAACCAGGAAGAAATGCGGGAG-
--------------------------------AGGTTATCTTGTGAGGTTA--ATGCCGCGTGATCATCGTCTTGACGCC
TTCTCGCTCTTCACAAATCACAAGAGCCGTAAAC-TGGAGCTCGG----GTGCGTACGTGAACGCA-GACGA-ATCAGGT
GAAATGAATTATTGCGTTTTATG-TTCTCCCTGTCCACATCCACTGACGGACGAGCCA-GGTTGCCATGCCAAAGGTCAG
CCGCCATCTTCATCACCGTATTGCAGAAAATA---------------------------TATGGAAAACTAAGATCATTA
GTCAGACATTACATAATTAGTAGTGCATAAGTATTTCAAGC---------------------------------------
----------GTAGAATATTGCATCGGGTATACAAGATCACAGAGGATACTGTGGATCACAGTACACGGAAACTCCATGG
AAGAATATCAATTTAGACTCCTGGGATGTGGTGGTGAATCTGGAGCTCGAGCAGAAAGTTTCAATTTCTCTTGC--GAGA
GGAAGGAAGATGGATAGCATCCCGTTGGATTAGATCACGCCGATTAGCAGCAA--------TAAGTAGACAAATCTCTTT
CCAACCCACTTGTTTGACTTCCGCGCGGCGCCACCACCACCCAGACCCGAGGCCCCCCCGCCGCCTATATATGCCGCCAA
ACCCGACGGCCACCACCCCAGAGCAGTAAACTCCGCTACAGCACACACAAACCAGAGACCACACAGGCAGCCAAGGAACG
TGAGATCGGCCG----------------------------GACGGAGATGGGCGCGAGCCTCCTGCAGGCGGTGGCGGCG
CTGGTGAGCACGTGCACGCGGCGGCTGCAGCGGGCGGCGAGGAGGATGGGCGCCGGCAACGGCAACGGCAAGCCGGCCGT
GGCGCCGTGGAGGAAGGCCTTCTCGCTGCCGACGGGCAAGGGGAAGGCGGCGGGGCGGGAGGAGGAA---GAGGGCGGGC
TGTGGAGGAAGGAGATACTCATGGGCGAGCGCTGCCAGCCGCTGGAGTTCTCCGGGGTCATCTACTACGACGCCGACGGA
CACCGCCTCGCGCAGCCGCCCCGGTCGCCCATGCGCAGCCCGCTCCCGGCGTCCTTTAAGCTCGCTGCCAACGCCGGCGT
CTGCTAGCCAGCGTCCGTGCGGAGGCA---CTCCTCCTCCTCCTCGTCCTTCCTTGGGCCGCGGCTTGAGCCGAGCAGAG
CGGAAAGATGGCGAAGCTTGCTCTGTGTTTTGTCCGGTGAGAGAGGCAGAGTATTCGTGTATATGTTGCTTCTTCTTAGT
GCTCTGTTTGCTTTTCTTTTTTCATTAATGGTCTTGTAATG---ATAGGAATTATAAACTA---TACTTTCCTGCAAAAT
TTGGTGTTGTCTGAGCA--------------AAC-----------CTGCTTGTGGGAGTTGATCATCTAGGCAAGTTATT
CTC-------------------------------------CTTTAGAAATCCTCATGATTTATGTGCTAGATTTTTTTTT
GACCAAAATGATTTATGTGCTAGATTGATCAGCGCAGCGTGAATGTTAAGAC---TATTTTCGCTTTAATTCTACCTATA
AGCCAGGTCACATGAGTCCAAACGCCTATTTGTTCAACGAACCGTGCCGTAAATATTGCACCGTTTCCTTGTGTGCTCAT
TTCGTTCTGCCTGTTATATGCCTCTCTCTTTTTGCGGGATAATAATAATTTGTAGTCTTACTCAAGTATCACGGTTACAA
TCATTTTGGTGTCTCACCCATGTCATGACATGGGTTTTTAAGAACGGTATGTAGCCATTAGAAGGGATTTTAAGAACCTG
TGTACATCGGAACCTACTTCATAAAACTTAGCCAAAAAGACATGCAAGTTCTGCAAAATACGACAAAAGATCACACACAC
ACACACACACACACACACACAATAATTAATAAATGAGAAACTTAAGATGTATCATTTTCAAAAAGAAAACCATCCAGGTC
AGAAATGGTCATATTACTTAACGAGTTAAATACACTACAGGTGCCCTAACTTGTCCGGCGCGATCAGTTTGGTGCCTAAA
CTTGAAAAATACACAAAAGTGGTGGAGTAACTTGTCTAGGCATTCAAATACGGTGCCTCTAGAGGTATGCCGCCGTATCA
AGTGCCCGTGGGGCATGTCAGCGTGTCGCTTGGCCACATGT
>chr7D_34
TGCTG---------------------------------ATATGATCATATCAATTTCCGAGGAGCCGTAGTATCCTACTC
CCTGTTTAAAAAATGGTA-ACAATCTGTGTGCTCAGGATAAAGAACATCACCTCCGACGGTTTGTTCTGGATTTTTTTTT
TGCCGCCGCAATTTGCAATGCTGCGCTAATGAATTTGCGCAATTTAGTCGGCTCATACAAAATCGAAAGCGATGGACGTT
TAGCGATATGGCACTTGAAAGGGCACGCAGGTTTAGTTTATTCG---------GGGTCAACC------------------
---------------AGGAAGAAATGTGGGAGAGGTAATCTTGTGAGGTTAATATGCCGCGTGATCATCATCTTGACGCC
TTCTCGCTCTTCACAAATCACAAGAGCCGTAAAC-TGGAGCTCAAGTACGTACGTACGTGAACGCA-GACCACATCAGGT
GAAATGAATTATTGCGTTTTTTGTTTCTCCCTGTCCAAATCCACTGACGGACGAGCCAGGGTTGCCATGCCAAAGGTCAG
CCGCCATCTTCATCACCATCTTGCAGAAAATA---------------------------TATGAAAAACTAAGATCATTA
CTCAGACATTACATTATTAGTTTATAGAGGGAGTAGTGATCTAAACACTTTTATATTAGTTCACATAGGGAGTATGTAAG
TATTGTAAATGTAGAATATTGCATCGGGTATAAAAGATCACAGAGGATACTGTGGATCACAGTAGGCGGGAACTCCATCG
GAGAATATCAATCG-GACGCCGGGGATATGGTAGTGAATCTGGAGCTCTACCAGAAACTTTCTCTTTCTCTTTT--GAGA
GGAAGATGGCATTC---CATCCGTTTGGATTAGATCACGCCGATTAGTAGCAAAACTGAATTAAGTAGACAAATATCTTT
CCAACCCACTTGTTTGACTTTCGCGCAGCGCCCGCCTCCACCACCCCCGAGCCCACCCCGCCGCCTATATATGCCGCCAA
ACCCGACGGCCACCACCCCACAGCAGTAAACTCCGCTGCAGCACACACAAACCATAGACCAGGCAAGAAGCCAAGGAGCG
TGAGACCGGCCG----------------------------GCCGGAGATGGGCGCGAGCCTCCTGCAGGCGGTGGCGGCG
CTGGTGAGCACGTGCACGCGGCGGCTGCAGCGCGCGGCGAAGAGGATGGGCAG------------CGGCAGGCCGGCCGT
GGCGCCGTGGAGGAAAGCCTTCTCGCTGCCGACGGGCAAGGGGAGGGCGTTGGGGCGGGAGGAGGAGGAGGAGGGCGGGC
TGTGGAGGAAGGAGATACTCATGGGGGAGCGCTGCCGGCCGCTCGAGTTCTCCGGGGTCATCTACTACGACGCCGACGGA
CACCGCCTCGCGCAGCCGCCCCGCTCGCCCATGCGCAGCCCGCTCCCGGCGTCCTTCAAGCTCGCCGCCAACGCCGGCGT
CCGCTAGCTAGCGTCAGTGCGGAGGCGCTCCTCCTCCTCCTCCTCGTCCTTCCTTGG------------GCCGAGCAGAG
CGGAAAGATGGCGAAGCTTGCTCTGTTTTTTGTCCGGTGAGAGAGGCAGAGTATTCGTGTATATGTTGGTTCTTCTTAGT
CCCCTGTTTCTTTTTTATTTT--ATTAATGGTCTTGTAATG---ATAGGAATTATAAACTA---TACTTTCCTGCAAAAT
TTGGTGTTGTCTAAGCAAGCTTCTTTGATTGAAC-----------CTGCTTGTGGGAGTTGATCGTCTAGGCAAGTTATT
CTC-------------------------------------CTTTAGAAATCTTCATGATTTATGCGCTCGGTTTTTTTTT
GACCAAAATGATTTATGTGCTAGATTGATCAGCGCAGCGTGAATGGTAAGACTAATATTTTGGCTTTAAT--TACCTATA
AGCCAGGTCACATGAGTCCACACACCTATGTGTTCAACGAACCGTACCGTAAATATGGCACCGTTTCCTTGTGTGCTCAT
TTCGTTCTGCCTGTTATATGCCTCTCTTTTTACGGG-----ATAATAATTTGTAGTATTACTCAAATATCACGGTTACAA
CCATTTTGGTGTCTTGCCCATGTCATGACATGGGTTTTTAAGAACGGTATGTAGCCATTAGAAGCGATTTTAAGAACCTG
TGTATATCGAAACCTACTTCATAAAACTTAGCCAAAAAGACATGTAAGTTCTGCAAAATATGACAAAAGATCACGCACAC
ACCCC----------CACACAATAATTAATAAATGAGAAAATTAAGATGTA-----------------------------
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>chr7A_157
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----------------------------------------------------------------------------TTAG
TGCCGCCGCAATGTGCAATGCTACGCTAATGGATTTGCGCATTTTAGTCGGCTCACACAAAATCGAAAGCGACAGGCGTT
TAGCGATATGGCACTTGAAAGGGCACGAAGATTTGTTTAATTAATTCGGGGCAGGGTCAACCAGGAAGAAATGCGGGAGT
TGTCAAAAAAACAAGAGGAAGAAATGCGGGAGAGGTTATCTTGCAGGGTTA--ATGCCGCGTGATGATCATCTTGACGCC
TTCTCGCTCTTCACAAATCACAAGAGCCGTAAAATTGGAGCTCAAATGCGTACGTGAACACAGACCTGATCACATCAGAT
GAGATGAATTATTGCCTTTTTGGTTTGTCCCTGTCCAAATCCGCTGACGGACGAGCCAGGGTTGCCATGCCAAAGGTCAG
CCGTCATCTTCATCACCATATTGTATAGAAAAATATATGGAAAACATGATTCGTTTTTTTATGGAAAACTAACATCATTG
GTCAGACAT-----------------------------------------------------------------------
------------------------------------ATCATAGAGGATACTGTGGATCATGGTAGACGGAAACTCCATGG
AAGAATATCAATCA-TACGCCGGCGATACGGCAGTGAATCTGGAGCTCCAGCAGAAACTTTCTCTTTCTCTTGTGAGAGA
GGAAGATGGCATTC---CATCCGTTTGGATTAGATCGCGCCGATTAGTAGCAAAATTGAATTAAGTAGACAAATCTCTTT
CCAACCCACTTGTTTGACTTTCGCGCGGCGCCCGCCACCACCACCCCCGAGCCCACCCCGCCGCCTATATATGCCGCCAA
ACCCGACGGCCACCACCCCAGAGCAGTAAACTCCGCTACAGCACACACAAACCAGAGAGACCACACCAGAAG--------
-GAGATCGGCCGCCCAGTTCAAAAAAAAAGGAGATCGGCCGCCGGAGATGGGCGCGAGCCTCCTGCAGGCGGTGGCGGCG
CTGGTGAGCACGTGCACGCGGCGGCTGCAGCGGGCGGCGAGGAGGATGGGCAG------------CGGCAGGCCGGCCGT
GGCGCCGTGGAGGAAGGCCTTCTCGCTGCCGACGGGCAAGGGGAAGGCCGCGGCGGGGCC---GGAGGAGGAGGGCGGGC
TGTGGAGGAAGGAGATACTCATGGGGGAGCGCTGCCAGCCGCTGGAGTTCTCCGGGGTCATCTACTACGACGCCGACGGA
CACCGCCTCGCGCAGCCGCCCCGCTCGCCCATGCGCAGCCCGCTCCCGGCGTCCTTCAAGCTCGCCGCCAACGCCGGCGT
CCGTTAGCTAGCGTCCGTGCGGAGGCGCTCCTCCTCGTCGTCC---TCCTTCCTTGG------------GCCGAGCAGAG
TGGAAAGATGGCGAAGCTTGCTCTGTTTTTTGTCCGGTGAGAGAGGCAGAGTGTTCGTGTATATGTTGCTTCTTCTTAGT
GCTTTGTTTGTTTTTCGTTTTTAC----TGGTATTGTAATGGTAATAGGAATTATAAACTACAGTACTTTTCTGCAAAAC
TTGGTGTTGCCTATGCAATTTTCTTTGATTGCAAAACTAGGTGCTCTGCTTGTGGGAGTTGATCAGCTAGGCAAATTATT
CCATGGAGAATTCTTTTTTCTTCCAGACTACCCATATTTTCTTTAGAAATCCTCATGGTTTG------------------
---------------TGTGCTAGATTGATCAGCG-----TGAGTGGTAAGATTAATATTTTCGCTTTAGTTCTACCTATC
AGCCAGGTCACATGAGT--------CTATGTGTTCAACGAACCATACCGTAAATATTGTACCGTTTCCTCGTGTGCTCGC
TTTGTTCGGCCTGTT-----------------------------------------------------------------
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>SNPs
---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------S-
---S------------S-S-----S--S----------S---------------S-----S-SS-S-------S----S-
---------------------------S--S--S------S----------------------------S----------
-----------S--S------------S-----S-S---S----------------------------------------
---------------------------------------------------------------------S----------
-------------------------------------------SS------S------------------S---------
--------------------S----------------S------------------------------------------
-----------------S--------------------------------------------------------------
--------------S------SSSSSSSSS-SS-SSSS-S----------------------------------------
--------------------------------S-------------------------------S---------------
------------SSS---S--S-----S----S---------------S--------S----SS---------S------
-----SSS-SSSSSSSS-----SS-----------------------S--------------------------------
--------------------S-----------SS-SS-SS---SS------S--S-------------------------
-----------------------------------------------------------------S-S---------S--
-----------------------------------------S--------------------------------------
---------------------------------------------------SSSSSSSSSSSSSS-----S---------
------------------------------------------------------------------S-------------
-------------------------S------------------------------------------------------
-----------------------S--------------------------------S--------S--------------
-S------S-----------------S------------------------------SSSSSSSSSSSS-----------
--------------------------S-----------------------------------------------------
----------S-----S-----S---------------------------------------------------------
------------S-------------------------------------------------------------------
----------------------------------------------------------------S---S-S---------
---------------------------------------------S----------------------------------
--------------------S--S-----S---------------S----------------------------------
---------------------------S---SS-S-SSSSS---------------S--------S--------------
S-------------SS------------------------------------------------S---------------
----S----S----------------------------------S---------------S-------------S-----
--S-SSSSSSSSSSS-------------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_143
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-------------------------------------------AACATCACCTCTGACGGCTG-----------------
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>reverse_2315
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--------------------------------------------------------------------------ACACAC
ACACACACACACAC------------------------------------------------------------------
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