>input_sequence_82826
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--------------------------------------ATGAAGCGCCTCTTCAGACGCCTCTCCCGCGTCGCCGCGGCC
GACTCCTCCTCCGCGGCCGCCGCCACGGCGTACCGGCAGCTCCGCGCGCCGAAGCAGGCCGCGTCGGCGGC------CGG
CGGCGCCAAGGTGCCGCAGGGGCACGTGCCGGTGTGCGTCGGCGAGGAGGGCGGGCCCGTGGAGCGGTTCGCGGTGCGCG
CGGACCTGCTGGGCCGGCCGGCCTTCGCGGCGCTGCTCCTCCGCGCCGCCCAGGAGTACGGGTACGGCCACCCCGGCGCG
CTCCGCATCCCCTGCCCCGTCGCCGACTTCCGCCGCCTCCTCGTCCGCCTCTCCGACGACCCCTACGCCGACGAGTGCTA
G-------------------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G130600
ATGTATACAAGTACCCATACCAACAGCACGACCAATCAACCAAAATATTCGGGCCCAAGTCGATGGAGGGGAAGCGTATT
TGGTTGAAACTCAGTTCCCCC---------TCTCTTTATCTCTACCTGAAGTCTTTTTACGCAAATTACCATTTTTCCAT
GTTAAGTTGATTACGTTGGTGTTAGAAATCCAAACATTCTACCAACCCTCTCAAATCAAGGTC-AAACGGGACAAAATGT
TATAATTAGGATGTTAGTGTGCCACTAAAGAATTTGGCATTGCACTTTTTGCGTAGAAATTCTAGGTCCTCCTTTGATTC
ACACGACAAGGAAAATGAAGGATTGCAATGACCCACCCATTTGGTGAGAATGTCAGTGTGGTGGACTCTGACATAATTTT
AAAACACGGTAATTCTC------ATGTCTTTGAACAAGTCACATGAGAAAAATGCAAATAGAGTTTTATAGAAATAAATG
ATGCAC-GAGACTATGAAGAAATACACTATAGATGTCGCATTGAATTACTCACTGGAGACGCATGGAATTTGAG------
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------------------------TTAATGTTAGATCTAGTACGATATTCTTATCGATGATATATATTCCATAGAATTAT
TCACTTATTTACTGTCC---------------AAAAACACTACAATTTTTTTGTTTTA-----GGTCCAAAAACATCCCT
CAAATTACAG----------------CGG--GTGTGCACAGTAATAAGGCAGAGTGTAGT-TACATCAACTGTAC-----
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----------------------------------------TGTGTATGTATGAGCGTCTACATCTGTACCTTGTTAAAAA
AACAAAAATGTAGCCTTTCTGT----------------------------------------------------------
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--------------------------------TAAAAACACATTGCACCAAGGAATAAAAGGTCCCCTGCACAAAAAAGG
C--AGAAATGGCAGAAAAGTGACAACGAGCCCCCTACGCCTCTATAAAGTA--GGACGGGCCGCAGCACCCCCCACCCAG
TACCACCCCGTCC----ACTGCAAACAAACCAACGCCTTGACCCCTGCGCGCTCCCTG-----CCCTGC-GCCAAGAACC
CAGCTTTTCTCCTCC---CCGCCGCCGCCTCCAGCGCCATGAAGCGCCTCTTCAGACGCCTCTCCCGCGTCGCCGCGGCC
GACTCCTCCTCCGCGGCCGCCGCCACGGCGTACCGGCAGCTCCGCGCGCCGAAGCAGGCCGCGTCGGCGGC------CGG
CGGCGCCAAGGTGCCGCAGGGGCACGTGCCGGTGTGCGTCGGCGAGGAGGGCGGGCCCGTGGAGCGGTTCGCGGTGCGCG
CGGACCTGCTGGGCCGGCCGGCCTTCGCGGCGCTGCTCCTCCGCGCCGCCCAGGAGTACGGGTACGGCCACCCCGGCGCG
CTCCGCATCCCCTGCCCCGTCGCCGACTTCCGCCGCCTCCTCGTCCGCCTCTCCGACGACCCCTACGCCGACGAGTGCTA
GGCGCCGGC------CTCCGCACCTTCTCGGCCCGCCGCTGGAGAACTCTGCCCCTCATTCGCCCCCCGTCTGACAGATT
TACCCCCGGGCACTGGGCAGACCTGCAATGTACATACAGTGGCAGGCCGAAGAGGA----GTCGCCGGAGCGAGGGTTAG
GATAGGGATCTCCTAGCTTCGTAGTAACTTTTTTTTATTACTGCCGAGCATGAGCTGAATGGGAAGAACTGTGGGTGTTC
CTTTTTCACCCCCTCTGGTTCTAGGGATTTCA--GTGTGTGTGTGCGTGCGTGTGTGAGGGAGAGAGAGAGAGGTAGTAG
TAGTATGAGTTTCTGCTAGGGATTTTGAGGTGTTCGGTGTTAACCATATGAGATCCTGAGGCTATC--ATGCCATATTTT
TACTGAGCTAGTAATATGATCTTTTAGCACTA--CATTGGTCTCCCTCCTTCTCTATGTATGTTTCAGTTTATATCAGAG
ATCCTCTGGTTCATATGAGATCTGTTTGGAATGCATGAATTCCTTGAAATTTTCA--CG--CATTTTAGAGAAGATTGTT
CAGTTATTTGAAATCGACGACGGCTTCCGCGGTCAAAACATTGTTATCCTCTGGTTCATTTTACTGAATTGCACTGCGTT
TTGGGAGGGGATGTGTTAACAGGGGCGCAAGCTGTGATGGCCTGTTGGGCAAGCGATGCCATGTTGGTGGTCCGGGCAAA
GATAGCAA-GGGTGCTGCTGGTTTGAAGCAGGATATATGCCGAATAAAGGAAAGGATACTGCAGATATCAACTTTTATTA
ACACCGAGACAAGCACTCAAGCAGTACATTTAGACCATTTGCACAGCTGATCTGCTGTAAGAGTGAGAACATCTTCAGCC
AGACGAAAGATTCAAGAAAATGCTGCAGCCAGGATATGAACTGCAGTCTCGCTGGCTTGTCACAGGCTGTTCAGGAAAAT
TTGGCCAACATCTTCAGCAGTGTTCTTATCAAGTACATTGCCATTGT-AGGGAAACTGAGTTA
>chr6B_1
ATGTATACAAGTACCCATACTAGCATCATGACCAATCAACCAAAATCTTCGGCCCAAAATCGATGGAGGGGAAGGGTATT
TGGTTGAAACTCAGACCCCCCCCCCACCCCTCTCTTCATCTCTTCCCGAAGTCTTCTTATGCGAATTACCA-TTTTCCAT
GTTAAGTTGATTACACTAGTGTTAGACATCCAAACATTCTACCAACCCTCTCAAATCAAAGTCAAAACGAGACAAAAGGT
TATAATTAGGATGTTAGTGTGCCATTAAAGACTTTGGTATTGCACTTTT-GCGTAGAAATTCTAGGTCCTCCTCTGATTC
ACAGGACAAGGAAAATGAAGGATTGCAATGACCCACCCATTTGGTGAGAATGTCAGCATGGTGGACTCCAACATAATTCA
AGAACATGGTAATTTTC------ATGTCTTTGAATAAGTCACATAAGAAAAATGCAAATAGAG-TTTATAGAAATAAATG
ATGCAA-GAGACTATGAAGATATATACTATAGATGTTGCATTGAATTACTCACCGGAGACGCGTAGAATTTGAG------
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------------------------TTAATGTTAGGTCTCGTACAATATTCTTATCAATGAAATATATTCCATAGAATTAT
TCACTTATTTATGAGGATATGCTACATTAATTAAGAACACTCAATTTTTTCGAC--ATTTTACGGTCCAAAAACATCCCT
CAAATTATAG----------------CAGGTGTGTGCACAGCAATATGGAAGAGTGTAGTATACATCAACTGTAC-----
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----------------------------------------TGTGTAGGTATAAGTGTCTACGTCTATATCGTTTTAGAAA
AACAAAAATGTAGCTTTTCCTGTTAAAAATAGGACGCCGATAACGCCCACATGTGTGGGTGTTAAGGGGTCTGCCCATAC
ATTTTGTATGGTGTTTAAGGATCAGCCCACACGCCTACGTGTGGGCAAAACAAGTAATGCCCACACGTCTCTTTTTTTCC
TTGCGATTCCTCTCACATGCCTACGTGTGGGCAAAATAGATAACGCCCACACGTCAGTACGTCATGCCTCCTACTTTATG
GTCCCGCACGTCTCACGTGACAGTCACCACGCGTCCCTGCAGTTGTCATTGTCTGGTCCCTCTTCCATGTTCATTTAACT
GCAGTTGCCATGTCGCTGAACTACGGTTGCCATGTCGGACAACTACAGTTGCCATGGTTGCTCAACTGCAGTTGTCATGT
ATGTTCTGGTCTACTGCAGTTGCCATGATTTCAAAACTTTAGGAGTTGCCACCTACTAACACTAGGCAGTTGCCATATAG
CACTACAAAAAAGGCATGGCAAAAAAACATGTTCGGGTAAAAGAGAGAGTTGCGATGTGCTCACAAGCACGCTAGGGCAG
TTGCTATGTAAAAAAAAGAGTTGCCATGTAAAGGAGAAAGCACATGTCAACTCGGGTAACAGAGAGTTGCCATCCGCTTA
CAAGCAAAGATAGGGCAGTTGCCATGTACCTTGAAGAAACGCATGGCAACTAACAGCTTTGGGTGTGGGCTTACGTGCAC
GCTAGGGCAGTTGGCAGTTACCATCTACCATGGAAAAGTACATGGCAACTCGGGTAACAGAGAGTTGACATCTGCTTACA
AACAAACCTAGGGCAGTTGCCATGTACCCTGCAGAAGCACATGGCAACTGACAATTTTGGGTGTGGGCGAGGAGACGGGC
GTGTGGGTGAAGTGATAAGCGCCCACACCAGCCTCTCTGCATGCGTGAAAACTGGTGTGTGGGCGACTTGCTAAACACCC
ACACACCAGTCCTGTGTGTGGTGAAAAAAAGACGTGTGGGCGACTGGACGAATGCCCACACACGATCCCAGTCCTACGTG
TCATAAAAAATCTGCTAGAACGCGCCAGGATTCGTGCAGAAGTGGTTGGATGAGAATCCATGCGTGTGAGCGAGTTGCCA
GACGCCCACACGTGTGGGCGTTAATATTTCCGTAAAAATATATTGCACCAAGGAATAAAAGTTCCCTGCA--AAAAAAAA
GGTAGAAATGGCAGAAAAGTGACAACGAGCCCCCTACGCCTCTATAAAGTATAGGACGGACCGCAGCACCCCCCACCCAG
TACCACTCCGTCC----ACTGCAAACAAACTCTCGCCTTGACCCCTGCGCGCTCCCTCCCTCCGTCCCCAGCCAGGACCC
CAGCTTTTCTCCTCCTCCCCGCCGCCGCCTCCGGCGCCATGAAGCGCCTCTTCAGACGCCTCTCCCGCGTCGCCGCGGCC
GACTCCTCCTCCGCGGCCGCCGCCACGGCGTACCGGCAGCTCCGCGCGCCGAAGCAGGCGTCCACGA---C------CGG
CGGCGCCAAGGTGCCGCAGGGGCACGTGCCGGTGTGCGTCGGCGAGGAGGGCGGGCCCGTGGAGCGGTTCGCCGTGCGCG
CGGACCTGCTGGGCCGGCCGGCCTTCGCGGCGCTGCTCCTGCGCGCCGCCCAGGAGTACGGGTACGGCCACCCCGGCGCG
CTCCGCATCCCCTGCCCGGTCGCCGACTTCCGCCGCCTCCTCGTCCGCCTCTCCGACGACCCCTACGCCGACGAGTGCTA
GGCGCCGGC----------GCACCTTCTCGGCCTGCCGCTGGAGAACTCTGCCCCCCATTCGCCCCCCTTCTGACAGATT
TACCCCCGGGCACTGGGCAGACTTGCAATGTACATACAGTGGCAGGCCGAAGAAGA----GTCGCCGGAGCGAGGGTTAG
GATAGGGATTACCTAGCTTCGTAGTAACTTTTTTTTATTACTGCTGAGCATGAGCTGAATGGGAAGAACTGTGGGTGTTC
CTTTTTCACCCCCTCTAGTTCTAGGAATTTCAGTGTGTGTGTGTGCGTGCGTGTGTGAGGGAGAGAGAGAGGGAG-GTGG
TAGTATGCGTTTGTGCTAGGGATTTTGAGGT-TTCAGTGTTAACCATATGAAATCCTGAGGCTATC--ATGCCATATTTT
TACTGAGCTAGTAATAT---CTTTTAGCACTACACATTGGTCTCCCTGCTTCTCTCTACATGTTTCAGTTCATATCAGAG
ATCCTCTGGTTCATATGAGATCTGTTTGGAATGCATGAATTCCTCGAAAGTTTTA--CGGTCATTTTACAGAAGGTAGTT
CAGTTATTTGAAATCGACGCGGGCCTTCGCGTTTGAAACATTGTTATCCTCTGGTTCATTTCACTGAATTGCATCGCGTT
T-------------------ACGGGTGCAAGCTGTGATGGGCAACTGGGCAAGCGATGCCATGTTGGTGGTCCGGGCAAA
GATAGCAAAGGG---TGCTGGTTTCAAGCAGGATATGTGCCGAATAAATGAGAGGATACTGCAGATATCAACTTTTATTA
ACTCCAAGACAAGCGTTCAAGCAGTACATTTAGAGCATTTGCACAGCTGATCTGGTGTAAAAGTGAGAACATCTTCAGCC
AGACTAAAGATTCAAGAAAATGTTGCAG-CTGGATATGAACTGCCGTCTCACTGGCTTGTCACAGGCTGTTCAGGAAAAT
TTGGCTAACATCTTCAGCAGTGTTCTTAG-AAGTACATTGCCATTTGCAGGGAAACTGAGT--
>chr6A_161
ATTCG---------------------------------------------------------------------------
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---------------TTGGTGGTAGAAATCCAAATATTCTACCAACCCTCTCAAATCAAAGTCAACAGA--ACGAAAGGT
TAGAATTAGGATGTTAGTGTGGCACTAAAGAATTTGGCATTGCACTTCTTGCGTGGTAATTCTAGGACTTCCTTTGATTC
ACGTGACAAGGAAAATGAAGGATTGCAATGACCCACCCATTTGGTGAGAATGTCGGTATGGTGGACTCCAACATAATTTG
AAAACATGGTATTTTTCATAGTAATGTCTTTGAATAAGTCATAGGAGAAAAAAGTAAACATAT-TTTATAGAAATGAATG
ATGCACGGAGAGTATGAAGAAATAG---ATAGATGTTGCATTGTATTACTCATTGGAGGCACACAGAATTTGAGTTAGAG
GGTGCTTGGATCCAAGGGACTTATTTTAGTCTGACTAAAAAATAGTCTCTCTAAGAGGCTAAAGTTCCAAGCACCCCTGA
CTAAAGAGGTGCTAAAACTAGTCTTGAGACTAAAATATTTTAGTCAGTGGTATTCCTATTAAAATGTGGATTAGTTCTCT
TTCTATTCATTTAACTCCTCTCCTTTAACACATGCAAGTTCTGGATTGGAGGGTTTGAAGGATAATAAATGCTCATTAAC
TTGATTTTAGTCCCTTTAGTATTTGGATCCAAGCATGGGTGAGGCTAGCAAGTTTTAGTCCCATTATTTTTAGTCATGAG
ACTAAAACGTATCCAGACACCCTCTTAATGTTAGATTTCGTACGATATTCTTATCAATGAAATATATTCAATAGAATTAT
TCACTTATTTATGAGGATATGCTACATTAATTAAGAATACTCAATTTTTTCCAAAAATTGTACCGTCCAAAAACATCTCT
GAAAGTACCGTGACAGGATAGAAATTCAGCCGTGTGCGAAGTAATAAGGAACAACGTAGTATACTCCCTCCGCCTCATAA
TATAAGTGTTTTTGACACTAGTGTCTTGTACATATACTGCATATGTTCAAGCGTCTATATCTGATGAGTAGTCTAAAAAA
CGCTCTTATATTATGGGACGAAGGAAGTACATTATATGTGTGCGTATGTATGAGCGTCTACATATGGGTAGTTTT-----
----------------TTCTGT----------------------------------------------------------
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--------------------------------TAAAAATACATTGCACCAAGGAATAAAAGGTCCCCTGCACAAAAAAAA
GATAGAAATGGCAGAAAAGTGACAACGAGCCCCCTACGCCTCTATAAAGTA--GGACGGGCCGCAGCACCCCCCACCCAG
TACCACTCCGTCCGTCCACTGCAAACAAACCAACGCCTTGACCCCTGCGCTCTCCCTCCCCTCCCCAGC-GCCAAGAACC
CAGCTTTTCTCCTCC---CCGCCGCCGCCTCCAGCGCCATGAAGCGCCTCTTCCGACGGCTCTCCCGCGTCGCCGCGGCC
GACTCCTCCTCCGCGGCTGCCGCCACGGCGTACCGGCAGCTCCGCGCGCCGAAGCAGTCCGCGTCGGCGGCCGGCGGCGG
CTGCGCCAAGGTGCCGCAGGGGCACGTGCCGGTGTGCGTCGGCGAGGAGGGCGGGCCCGTGGAGCGGTTCGCGGTGCGCG
CGGACCTGCTGGGCCGGCCGGCCTTCGCGGCGCTGCTCCTGCGCGCCGCCCAGGAGTACGGCTACGGCCACCCCGGCGCG
CTCCGCATCCCCTGCCCCGTCGCCGACTTCCGCCGCCTCCTCGTCCGCCTCTCCGACGACCCCTACGCCGACGAGTGCTA
GGCTCCGGCCCCTGCCTCCGCACCTTCTTCGCCTGCCGCTGGAGAACTCTGCCCTTCATTCGTCCCCATTCTGACAGATT
TACCCCCGGGCGCTGGGCGGACTTGCAATGTACATACAGTGGCAGGCCGAAGAGGAGTCGGTCGCCGGAGCGAGGGTTAG
GATAGGGATCTCCTAGCTTCGTAGTAACTTTTTTTTATTACTGCTGAGCGTGAGCTGAATGGGAAGAACTGTGGGTGTTC
CTTTTTCACCCCCTCTGGTTCTAGGAATTTCAGTGTGTGTG----CGTGCGTGAGTGAGGGAGAGAG------GTAGTAG
CAGTTTGAGTTTGTGCTAGGGATTTTGAGGTGTTCGGTGTTAACCATATGAGATCCTGAGGCTATCATATGCCATATTTT
TACTGAGCTAGTAATAT---CTTTTAGCACTG--CATTGGTCTCCCTCCTTCTCTCTGTATGTTTCAGTTCATATCAGAG
ATCCTCTGGTTCATATGAGATCTGTTTGGAATGCATGAATTCATCGAAAGTTTTACGCG--CATTTTACAGAAGGTAGTT
CAGTTATTTGAAATCGACGCGGGCCTTCGCGTTTGAAACATTGGTATCCTCTGGTTCATTTTACTGAATTGCACTTCGTT
TTTGGAGGGGATGAGTTAACACTGGTGCAAGCTGTGATGGCGAGCGATGCCATGT-TGCCATGTTGGTGGTCCGGGCAAA
GATAGCAA-GGG---TGCTGGTTTCAAGCAGGATATATGCCGAATAAATGAAAGGATACTGCAGATATCATCTTTTATTA
ACACCGAGACAAGCACTCGAGCAGTACATTTAGAACATTTGCACAGCTGATCTGGTGCAAGAGTGAGAACATATTCAGCC
AGACTAAAGATTCAAGAAAATGCTGCAGCCTGGTTATGAACTGCAGTCTCACTGGCTTGTCACAGGCTGTTCAGGAAAAT
TTGGCTAACACCTTCAGCAGTGTTCTTATCAAGTACATTGCCATTGTGGA-GAAACTGAGTTA
>SNPs
--------------------S-S--S--S-----------------S-----S--S--S---------------S-----
--------------SS--------------------S------S--S--------S---S--S--------S--------
--------------S--------------------------------------------S---------S-------S--
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---S-----------------------------------------------------S----------SS---------S
------S-------S-------------------S----------------------------S----------------
------------------------S-----------S---------------------------S---------------
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--------------------------------------S----------------S----S-------------------
-----------SSSSSS-----------------S------SS-S-----SSSSSSSS----------------------
---------------------------S---------------------S------------------------------
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--------------------------------------------------------------------S-S-S---S---
--------------S-----------------------------------------------------------------
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--------------------------------------S---------------------------------------SS
S-------------------------------------------------------------------------------
------S--------------------------------------------------S--------S-------------
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----------------------------------------S---------------------------------------
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---------------------------------S----------------------------------S-----------
----------------------S---------------------------------------------------------
--------------------------------------------S-----------------------------------
-------------------------S---------------------------------------------S--------
------------S-------------------------------------------------------------------
-----------------SSS-----------------------------------S--------------S---------
--------------------------------------------S----S---S--------------S-----S-S---
-------------------SS---S-S----S-SS---------------------------------------------
--S----------S-------S---S----------------S-S-----------------------------------
------------SSS---------S-----------------------S-------------------------------
----------------------------------S-------------------S-------------------------
----S-------------------------S-------------------S-----------------------------
-----S---------------------------------------------------------
>forward_75
-------------------------------------------------------CAAGTCGATGGAGGGGAAGC-----
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>reverse_3625
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------------------------TTCCGCGGTCAAAACATTGT------------------------------------
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