>input_sequence_82798
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--------------------------------------------------ATGAGGACCAGCCTCCCCCTTGTCGTCGGC
GTCGGCGTCGGCATCGTCATTTGCTCCATCATCATGCCCGCCACGGCGATATCGATGCCTGGAGCGTGGGAGTACTGCAA
CGTCGACGCCCTGAAGATGCAGGAGCTCGGGAAGTGGGCAGTGGCGGAGCACGTCAAGATGGCGAACGATGGCATCCGAT
TCATCGAGGTGTGGGGCTGCGAGGAGCAGGTTGTTCAAGGCGTTAACTACCGTGTCTTCCTCCACGCGTTCCACAACTCC
GGCGAGAAAGGCCGATTCCAGGCGGGCGTGTACGAGGGGGCGTCGAGCAGTGTACGCAAGCTCGTCTCCTTCGACCCGAT
CATGTAG-------------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G252500
ATGGTTTATACCTTACGCAGCAGATGTGGTGACAACGGAGGCTATGGCTATGCGTGATGGATTAATCTTTGCAAATTCTC
TGGGGTTCCCTCGAGTGGAAGCTGAGTCTGACTCCTTGACGGTAATTGATTATTGTACTGGACAGACAAGATGGTGGGAT
GCTGCGGCGGCGATCTTTGCGGAATGTGTGGACGTGTCTTCATCAATCGGGAAGGTCAAATTTAAACATTGTTATCGTTC
TTCTAATCAAGCGGCGCATGTGCTAGCTAATCACGGTTTTTGTAATAAGATTTCTAGTTGTTGGATGGGGAGCCTCCGGG
CTGCCTAGTTCCAAACCTTGTGGACGATGTAATCCCTGTTTAATTTTTAATAAAGCTAGCCATGATGGTCTTCCCTCAAA
AAAATAATTTTGGTCACAAAATAGACCAGGGGTAAAATGGACTTCTCAGGTCACATTTAACGGCGTTAGTTGCCAAAACT
GATGGAAATGTCGTAGAGGCAACAAAATGAAGTTTGAGTGTCAAAAAAAGGAAGAAAATTTTTATCAGCGCCAAAGAGGG
AACCAAATTTTGAGGAAGGGCCAAATAAGGAATTCTCTCTTGTATGAAAGCCGAACATTTTCATGTGGGGTGTTACTTTA
TTGCATCCATCGAATAATTGTCACTAATCCGT-ATAAGATGGATATAGAACATTTAATGCATGCTTTATAAGCAAGAATT
TATTGCTACAAAAGCAAGTCG---GATAGATATGCAACTAATCAATGGATGCCAAACTATACAAGATAGATATTGCCTTC
CCATCAGTAACTACTAATAAATCAAAAAAGGGACATACATTCAACTAATTTCCACCATCATGT-----CCTGCCAATCTA
TTTATACCCCTCTGTTCAGCTGTCCTTACCATCACCACGCCACAACAGTATCCTCGACTCATCCCATTGTTCTTAATCTT
GCAGCCCCATTAATCGACCCTCATCCAAGAGAAACCACAAG-CATCAGCCATGAGGACCAGCCTCCCCCTTGTCGTCGGC
GTCGGCGTCGGCATCGTCATTTGCTCCATCATCATGCCCGCCACGGCGATATCGATGCCTGGAGCGTGGGAGTACTGCAA
CGTCGACGCCCTGAAGATGCAGGAGCTCGGGAAGTGGGCAGTGGCGGAGCACGTCAAGATGGCGAACGATGGCATCCGAT
TCATCGAGGTGTGGGGCTGCGAGGAGCAGGTTGTTCAAGGCGTTAACTACCGTGTCTTCCTCCACGCGTTCCACAACTCC
GGCGAGAAAGGCCGATTCCAGGCGGGCGTGTACGAGGGGGCGTCGAGCAGTGTACGCAAGCTCGTCTCCTTCGACCCGAT
CATGTAGACGAGGTTTTTTCGTGTATCTGTAAGTGCGGAGGTCGTGACAGGATATATTTATGAAGCATACTGTCGTTTCT
TTGATTGTTTAACATCGGTAATAAAGAAAAAAGGTAAGAATGTATGCAAGCCTTGCCGGTGATTAGTGTACGAACCCAAA
GGTATCACCGTGGCAGTCCTAGCAAGCAGGCAAT-GAGTATCCTCCTCGGCGCTATCGTCGCCGTCGTCAGACCATGGGC
ATGGGGCACGCTAGCCATGGCAAGCCAAA--------ACCCAGAAGCTCGGCCGTTGGGTGGGTGACAGAGCACGTCGAA
GGCTGAGGAACATGCTCATTCAGAGTTTCAGACCCGAGCTCCTCTCCTTCAGACAGATCATCTGAGTGACGGCCGGTTAT
ACCGGAGATTTGAGATTTCTTTATGTATCGGAGATCGCATATAATTAA--TATGATACGTATATCCCATTTTAGATTGAA
CGCTGCTATGCATACGGC--------------------------------------------------------------
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----------------GACTTTTGTCCCATGTTTGTACGATGCTATGGTTAGAACCATAGCTTTTTTTTAGGCAAACTCA
--ATCTTTATTATAACGTCACAATGTTTACAAGGAGGAATAAAAAGGTCTCCGGGCTGACCGAATCAAACATCGCCCCCA
AAACAGACCTGACATGGCACAGAACATGGAC-GCCTGTTCATATGAGGGCCATGTCGTGTCGTCACGCGGGCCTCCCCTC
CGGAGACAAGCACGGCGCATAAGAGAGCAACTAATTAACGGTTTGCCTCAAAAAAAACTAATTAACGGTTGACTCTTTTC
AAAAAGGAAAATTTAAACGGTAGGCCCGGCGTGTGTGACAACCGGCGCGTGTGCTTTTCAGTATTTTTGGCTGTTTGGGG
GCATTTTTTATCAAAAATACTAATCCCGCAG-AAAAACCTTGGTATTTTTTTTTACAAAAAGAACATAGCGTATCGGCAC
GTGGGCCTACCTCGACGGATCAGCATAACGCAAGGCGTGTCATACGCAAATCGGATTACA
>chr4B_600
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---------------------------------------TTGTATGAAAGTCGAACATTTTCATGTAGGGTATTACTTTA
TTGCATCCATCGAATAATTGTCACTAATCCGAAATAAGATGGATATAGAACAT-TAATGCATGCTTTATAAGCATGGATT
TATTGATACAAAACCAAG---TAAGATGGATATGCAACTAATCAATGGATGCCAAACTATACAAGATAGATATTGCCTTA
CCATCAATAACTACTAGTAAACCCAAAAAGGGACATACATTCAACTAATTTCCACCATCATGT-----CCTGCCAATCTA
TTTATAACCCTCCGTTCAGCTGTCCTTACCATCACCACGCCACAACAGTGCCCTCGACTCATCCCATTCTTCTTAATCTT
GCAGCCCCGTTAATCG-----CACCCAAGAGAAACCACAAGCCATCAACCATGAGGACCAGCCTCCTCCTTGTCGTCGGC
GTCGGCGTCGGCATCGTCATTTGCTCCACCATCGTGCCCGCCACGGCGATATCGATGCCTGGGGCATGGGAGTACTGTAA
CGTCGACGCCCTGAAGATGCAGGAGCTCGGGAAGTGGGCAGTGGCGGAGCACGTCAAGATGGCGAACGACGGCATCCGAT
TCATCGAGGTGTGGGGCTGCGAGGAGCAGGTTGTTCAAGGCGTTAACTACCGTGTCTTCCTCGACGCGTTCCACAACTCC
GGCGAGAAAGGCCGATTCCAGGCGGGCGTGTACGAGGGGGCATCGAGCAGTGTGCGCAAGCTCGTCTCCTTCGGCCCGGT
TATCTAAACGAGGTTTTCTCGTGTATATGTAACTGCGGAGGTCATAACAAGATATATTTATCAAGCGTGCTATCGTTTCT
TTGATTGTTTGGCATCCGTAATAAAA--GAAAGTTAATACTGTATGCAAGCCTTGCCGGTGATTAGTGTACGAACCCAAA
GGTATCACCGTGGCAGTCCTAGCAAAGCAGCCGAGGAGGATCCTCCTCGGCGCTATCGTCGCCGTCGTCAAAC------C
ATGGGGCACGCTAGCCATGGCAAGCCAAACTGCCAAAACCCAGAAGCTCGGCCGTTGGGTGGCTGACAGAGCGCGTCGAA
GGCTAAGGGCATGCTCTCA------TTTCAGACCGGAGCTCCTC----------------TCTGAGCGACGGCCGGCTAT
ATCGGAGATTAGAGATTTCTTTATGTTTCGGAGATCGCATATTATAGTAGTATGATACGTATATCCCATTTCAGATTGAA
CGCTGCTATGCATACCAT--------------------------------------------------------------
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----------------GACTTCCGTCCCATGTTTGTACGATGCTATGGTTAATTCCAGGCGACCATAGGCTAACGGGCCG
GACCGGCCACGGGACCGAATGCCCCACAAT--------------------------------------------------
AAACGGGCCTGACACGGCACAAAACATGGGAGGCCCGTTTATATGAGGGCCATGTCGTGTCATCACGTGGGCCTCCCCTC
CGTACACAAGCACA-CGCATAAGAGAGCAACTAATTAACGGTCGGC----------------------------CTTCTC
AAAAAAGAAAGTTAAGCGGTC-GGCCCGGCATGTGTGACAACCGGCCCTTGTGCTTTTCAGTCTTTTTGGCTGTTTGGGG
GCATTTTTTATCAAAAATAATAATCCTGTAAAAATAACCTTGGTAATTTTTTTT----AAATAACATGGCGTATCGGCAC
GTGGGCCTACCTCGACGGGTGAGCATAACGCAAGGCGTGTC-------------------
>chr4A_694
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------------------------------------------------------TAATGCATGCTTTATAAGCATGGATT
TATTGATACAAAACCAAGTACTAAGATAGATATGCAACTAATCAATGGATGCCAAACTATACAAGATAGATATTGCCTTC
CCATCAGTAACCACTAATAAATCACAAAAGGGAGATACATTCAACTAATTTCCACCACCATGTCGACTCCTGCCAATCTA
TTTATGCCCCTCCGTTCAGCTGTCCTTACCATCACCACGCCACAGCAGTGTCCTCGACTCATCCCATTGTTCTTAATCTT
GCAGCCCCGCTAATCGACCCTCACCCAAGAGAAACCACAAGCCATCAACCATGAGGACCAGCCTCCTCCTTGTCGTCGGC
GTC------GGCATCGTCATTTCCTCCATCATCATGGCCGCCACGGCGATGTCCATGCCTGGGGCATGGGAGTACTGTAA
CGTCGACGCCCTGAAGATGCAGGAGCTCGGGAAGTGGGCAGTGGCGGAGCACGTCAAGATGGCGAACGATGGCATCCGAT
TCATCGAGGTGTGGGGCTGCGAGGAGCAGGTTGTTCAAGGCGTTAACTACCGCGTCTTCCTCCACGCGTTCCACAAGTCC
GGCGAGAAAGGCCGATTCTAGGCGGGCGTGTACGAGGGGGCGTCGAGCAGTGTCCGCAAGCTCGTCTCCTTCGACCCGAT
CATGTAAACGAGGTTTTTTCGTGTATCTGTAAGTGCGGAGGTCGTAACAAGATAAATTTATCAAGCGTACTGTCGTTTCT
TTGATTGCTTGACATCGGTAAAAAAAAA----------------------------------------------------
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>chr4A_1453
A-------------------------------------------------------------------------------
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----------------------AAAA--AAAAGGTGACAATGTATGCAAGCCTTGCCGGTGATTAGTGTACGAACCCAAA
GGTATCACCGTGGCAGTCCTAGCAAGCAGGCAAT-GAGTATCCTCCTCGGCGCTATCGTCCCCGTCGTCAGACCATGGGC
ATGGGGCACGCTAGCCATGGCAAGCCAAA--------ACCCAGAAGCTCGGCCGTTGGCTGGGTGACAGAGCACGTCGAA
GGCTGAGGAACATGCTCACTCAGAGTTTCAGATCCGAGCTCCTCTCGTTCAGACAGATCATCTGAGCGACGGCCGGTTAT
ACCGGAGATTTGAGATTTCTTTATGTTTCGGAGATCGCGTATAATTAA--TATGATACGTATATCCCATTTTAGATTGAA
CACTGCTATGCATACGACGACTTTCGTCCCGCGAACTAATCTGTGATTGGATGGTTAGAGGTACTGTAGTATCCTCAGCC
CATCAGGGTTTAAATCCTGATATCTACAGTGACTTCGTTAATTTTGAGATGATATGGCAGCTCAGTCTTTCGAAAGTGCT
CATAGGGATAGGGTGTGCGTATGTGCATTCATATAGAGATGAGTGTATGCATGTGTATATGAGTACTTGTGTCCGTACTA
ATATTGAAAAAAAGACGACTTTCGTCCCATGTTTGTACGATGCTATGGTTAAAATCATAG---TTTTTTAGGCAAACTTG
CCATCTTTATTGTAATGTCACAACATTTACAAAGAGAAAATAAAAGATCTTTGAGCTGACCTAATCAAATATGACCTCCA
AAACAGGCCTGACATGGCACAAAACACAT-AGGCCCATTCATATGAGGGCCGTGTCATGTCGCCGCGGGGGCCTCCCCTC
TAGATACAAGCACGGCGTATAAGAG-------------------------------------------------------
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>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S---------------S----S--------
-------------------------------S---------------------S--------------------S-S---
-----S-------S-----SS-----------------------------------------------------------
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------------S------------------------------------S------------------------------
--------S--------------S-----------------------S------------------S-------------
--------------------------------------------------------------S--S-----------S--
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-----------------------------------------------------S--------------------------
------S--------------------------------------S---S-----------S----S-------------
----------S--------------S-----------S------------------------------------------
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------------------S---------------------------S-------------------S-------------
--------------------------S-----------------------------------------------------
----------------S---------------------------------------------------------------
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----------------------S----------------------------S--------SSS----------------S
-----------S-----------SS-------S---S--SS-----S---SS-S-------S-------S--SS--S---
------S--------------S-------SS----S-------------------------------S------------
----S-------------------------------------SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--
-----S----S--S-SSS-SSS--------S---------------S-S-------------S-----------------
-------------------S------S-S-S---S----------S--------SSSS---S-----S------------
------------------S-S--------------------SSSSSSSSSSSSSSSSSSS
>forward_53
---------------------------------AACGGAGGCTATGGCTATGC---------------------------
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>reverse_2270
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-----------------------------ACGCCTGTTCATATGAGGGC-------------------------------
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