>input_sequence_82777
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---------------------------------------------------ATGCCGAGTGGGGACCAGGTCGGTGCATA
TCGGTTCATGACGTGCCCCTCTTTGTCAACTAGGAACTTGGTGAAGTTCCATTTGATACGCTCTCCGAATAGACCGCCTC
TCTCTGACTTCAAGAACTTGTACAGCGGGGCAGCATTGTCGCCATTCACGTCGACCTGTTGCCAACTCAGAAATGTTTAG
ATCGAAAATAAGTGCATTTGTGTTTGGAAGCTAGCACACACACAG---AAATAGGAAGGTTTCTTCGTTGCTTGATAGAC
CTTGCGAAAAATAGGAAACTCTGCTTGGAAGCGATTGCAAGCAAACTCCACAATCTTCTCATCGCTATCTGGTTCCTGCC
CGGCAAACTGA---------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G598100
GTGCATTTCTTTGTAGGGATTGTATGAAATCCTCAGTTTATCCGGCTCTTACAATCTGAACGAGGGCCAGCAAAATCAGA
CCGACGGGATCAGTGTCACGCTCTGCAGCCCGGAGAGGCACATCATTGGAGGTGTTCTGGGTGGAGCATTGGTAGCTGCC
AGTACTGTGCAGGTAACAGCAATTTACCAGA----CCTCAACAGAAAAGATTCAGACATGGAACAAAGCTCGT-GCATCT
ACTTTATTTTGTTCCTAAACAGAAAAGA---GTATCATACAGCATAGAAGTTTCTAATCCTGTTTGGCATTGTGCAGGTG
GTGCTAGGGACTTTTGTGCAAGGAGGGTCCAAATCAAAGTCCAAGAAAGCCGCGAAACCACCGGCTTTCGGTCCCGACTC
ACTCACCGGCGCTGGGCCAGACATGCCGTCACCCAGCTCAGGACATAACCAAAACCTAACGTCGCCGCCCTCCGTTGTAT
CGACGGGAGGGTGGCCTAGCTCTGGGATATTTGACGCGCGAAGTTCCAACATTGATATCAACTCTTCTAGAGGATAGCTC
ATATTTGCCGACACTTCCATCTCTCGAGAGATTTTTCTGTTCCCAAAAAGAATACCAAATGTATACTTTGAAATAGCCCA
TTCGGTTTTTGAGATCATTCTTATAGATTATTCGCCAGGCTGTGTTGCTGTTGCATCAAATATAATTTTGTTTGTATTTC
GGCGAAATTGTTATTTTCTTTTCACCATGTAGAAAACAGAGTAGCATACAACAGGATGGAGTTACTCTTGATAGAGCAAG
TGTACATACACATACAGTAGCGAAAAGAACAGATGAC-ACATACACATGAGTGAACACGCCCAGCATGATCTTCCCTGGA
G--ATACCTCAAACCTCCAACAGCTTCTTGATGTCATTCTGCGAAAGCCGAAAACATTCACCAGATGAATTACCATGCTG
GTGGAGAAGAACAATATGGAATATAAACTGTTGAGTTAGAGCATCACCTCAATGCCGAGTGGGGACCAGGTCGGTGCATA
TCGGTTCATGACGTGCCCCTCTTTGTCAACTAGGAACTTGGTGAAGTTCCATTTGATACGCTCTCCGAATAGACCGCCTC
TCTCTGACTTCAAGAACTTGTACAGCGGGGCAGCATTGTCGCCATTCACGTCGACCTGTTGCCAACTCAGAAATGTTTAG
ATCGAAAATAAGTGCATTTGTGTTTGGAAGCTAGCACACACACAG---AAATAGGAAGGTTTCTTCGTTGCTTGATAGAC
CTTGCGAAAAATAGGAAACTCTGCTTGGAAGCGATTGCAAGCAAACTCCACAATCTTCTCATCGCTATCTGGTTCCTGCC
CGGCAAACTGATTGCAGGGGAAAGCCAATACCTCCAAACCTAATTGCAGCAGAAAACATG-CAAAGATAAATGAAAATTG
AAGACG-AAG--TACAATGCAAGTGATTTGGTCTGCACAATGGCACGTCTCGTCTAACTGTTTATTTATAAT---TCATA
CTGAAGACTTGCAGCCTTACATAAACTGTACGGATTCCTCTTTCTAC----------------------CACTATTTAGC
CCAACGATTTATTCCAATCTCCAATCTGAAAACTAACTCAACTTGTATAGTTAGAGATGAACACAGCATCGCTTGTGTCA
TATCTGTTTGATGCGAGGCAAACTGTTGCCCTGGTTCAACTTTTAGGACTTCTCAACAGTCAACACCACTTAAGTCTTAT
AAATGAACGAAAATACAACTTCAAAACACGTTCAGTCAT-GTATAAGCCTATACCTGAGAAGCCATGCTCT-GAACAGCT
AGGTAAGCTACGGGTAAAAGTCCCACGGTTTGTTTAGTAAGCAGGTGAAGTATATTCTGTATGCACACACTATGAT--AA
AGAAAATCCGTCAGTGCCATATATGCTGTGCTTGTGCTGGTTGAATTGCCTCTGTCATGAATTCTCAGGTG-------TT
ATGAGCAAAGACGTGTATAAGGTCTTAATGAAACATTTTACTCACTTTGGGTTTCTATAGTAAAGGCAAAGCCAATGGCT
TGTTCTCTAAAAAAAATGGAACATTCCCAATGACATATAAAAGTGATGCATCGAAGAGCTTCAAGCATTCCCCACAATGA
GATATACAACCAAACCATTTGACATC-----AATCACATCATTTACAACATATATTGTGTTCAGTTTCAGCACAAATAGC
GAATGCTCGATCAAGAAACAATGGTTAAGAGCCGTACAGAGTACCTAGTCAGT---------------------------
--------------------TAGAGCTACTGCGATTAGTGGAA-TGACATGTGCAAAGCTATAGAAAACAA-GTACCTTT
CTCCCTGTATTTCTCATAGAGTTGGCCCAGCTCCGTGTAGTTGGAATTTGCCAGACCACTGCAAG
>chr2B_3
GCATTTGT-TTTGTAGGGTTTGTATGAAATCTTGAGTTTATCCGGCTCTTACAATCTGAACGAGGGCCAGCAAAATCAAA
CCGACGGGATCAGCGTCACGCTCTGCAGCCAGGAGAGGCATATCATTGGAGGTGTTCTGGGTGGAGCATTGGTAGCTGCC
AGTACTGTGCAGGTAACAGCAGTCTACCAGA----CTTCAACTGAAAAGATACACCCATGTGACCCATCTAACAGCATCT
ACTTTATTTTGTTCCTAATAAACAGATAGGGGTATCATACAGCATAGAAGTTAATAATTCTGTTTGGCA-TGTGCAGGTG
GTACTAGGGACTTTTGTGCAAGCAGGGTCCAAATCAAAGTCCAAGAAAGCCGCGAAACCGCCGGCCTTTGGTCCCGACTC
GCTCACCGGCGCTGGGCCAGACGTGGCGTCGCCCAGCTCAGGACATAACCAAAACCTAACGTCGCCGCCCTCCGTTGTAT
CGACGGGAGGGTGGCCTGGCTCTGGGATATTTGACACGAGAAGTTCCAGCATTGATATCAACTCTTCTAGAGGATAGCTC
ATATTTGTCGACACTTCCATCTCTCGAGAGATTTTTCTGTTCCCAAAAAGAATACCAAATGTATACTTTGAAATAGCCCA
TTCGGTTTTTGAGATCATTCTTAGAGATTACTCTCCAGGCTGTGTTT-TGTTGCATC-AATATATTTTGTTTGTAATTTT
GGGGAAATTA---------TTTCACCGTGTAGAAAACAGAGTAGCATACAACAGACTGGGGTTACTCTTGATAGAGCAAG
TGTACACACACATACAGTAGCGAAAAGAACAAATGAC-ACATACACATGACACGCCGCC----GCATGATCTTCCCTGGA
G--ATACCTCAAACCTCCAACAGCTTCTTGATGTCATTCTGCGAAAGGCGAAAACATTCAGCAGATGAATTACCATGCTG
GTGGAGACGAACAATATGGAATATGAACTGTTGAGTTAGAGCATCACCTCAATGCCGAGTGGGGACCAGGTCGGTGCGTA
TCGGTTCATGACGTGCCCCTCTTTGTCAACTAGAAACTTGGTGAAGTTCCATTTGATACGCTCTCCAAATAGACCGCCTC
TCTCTGATTTCAAGAACTTGTACAGCAGGGCAGCATTGTTGCCATTCACGTCGACCTGTTGCCAACTCAGAAATGTTTAG
ATCGAAAATAAATGCATTTGTGTTTGGAAGCTATCACACACACACAGAAAATAGAAAGGCATTTTTTCCGCTGGATAAAC
CTTGCGAAAAATAGGAAACTCTGCTTGGAAGCGATTGCAAGCAAACTCCACAATCTTCTCATCACTATCTGGTTCCTGCC
CGGCAAACTGATTGCAAGGGAACGCCAATATCTCCAATCCTGATCGCAGCAGAAAGCATTTCAAAGATAAATGAAGATTG
AAGACAAAAG--TATACTGCAAGTTATTTGGCCTGCACAATGGCACATCTTGTCATACAATTTATTTATGAT---TCACC
GTAAAGAGTATAAGCCTAACATAAAATGTGTATTTCTC---TTCTAC----------------------CGCTATTTAGC
CCCAACGTTGACTCCAGTCTCCAATCTGAAAACTAGCTCAACTTGAATAGT-GGATCCAAACACAGAACGGTTTCTGTAA
TCTCTGTTTGATGGGAAGCAAACTGTTGACCAGGTTCAACTTCTAGGGACTTT--------------------GTCTTAT
GAAAGGATGAAAATACGACTT-AAAAAAAATTCAGTCATAGTATAAGCCTCTACCTGAGAAGCCATGCTCTTGAGCAGCT
AG-----CTACGGGTGAAGTTCCACAGC-TTGTCTAGTAAGCAGGTGAAGTGTATTCTTTATGCACACATTATGACCAAG
AGAAACTACTCAGGTGCCATATCTG------TTGTGTTGATTGAATTGCATCTGCTATGAGTTTGCAGGGGTTATGACTT
ATGAGTAATGGCGCATATAAGGTCTTTATGAAACATTT-ACTCAATTTGGGTTA--ATAGTAAAGCCAAAGCCAATGGCT
TGTTCTCTAAAAAAA-TGGAACATTCCCCATGACATATAAAGGTGATGCATCGAAGAGCTTCAAGCATTACCCACAATGA
GATATACAACCAAACCATTTTAATGGACATAAATCACATCATTTATAACATATATTGTGTTCAGTTTCAGCACAAACAGC
GAATGCTCAATCAGGAAACAATGGTTAAGAGCAATACAGAGTACCTAATCAGT---------------------------
--------------------CAGAGCTACTGCGATTAGTGGATTTGGCATCTGCAAAGCTATAGAAAACAA-GTACCTTT
CTCCCTGTATTTCTCATAGAGTTGGCCCAGCTCCGTGTAGTTGGAATTTGCCAGACCACTGCAAG
>chr2A_10
---------TTTGTAGGGATTGTATGAAATCCTGAGTTTATCCGGCTCTTACAATCTGAACGAGGGCCAGCAAAATCAAA
CCGACGGGATCAGCGTCACGCTCTGCAGCCCGGAGAGGCATGTCATTGGAGGTGTCCTGGGTGGAGCATTGGTGGCTGCC
AGTACTGTGCAGGTAACAGCAATCTACTAGATCAGCCTCATCTGCTAAGATTCAGACATGGAACCAAGCTCCT-GCATCC
AGATCAACCTCATTTGCTAAGATTCAGA-------CATACAACATAAAAGTTTCTAATCCTGTTTGGCATTGTGCAGGTG
GTGCTAGGGACTTTTGTGCAAGGAGGATCCAAATCAAAGTCCAAGAAAGCCGCGAAACCACCGGCTTTCGGTCCCGACTC
GCTCACCGGCGCTGGGCCAGATGTGGTGTCGCCCAGCTCAGGACATAACCAAAACCTAACGTCGCCGCCCTCCGTTGTAT
CGACGGGAGGGTGGCCTAGCTCTGGGATATTTGACACACGAAGTTCCAACATTGATATCAACTCTTCTAGAGGATAGCTC
ATATTTGTCGACACTTCCATCTCTTGAGAGATTTTTCTGTTCCCAAAAAGAATACCAAATGTATACTTTGGAATAGCCCA
TTCGGTTTTTGAGATCATTCTTATAGATTACTCTCCAGGCTGTGTTT-TGTTGCATC-GATATAATTTTGTTTATATTTC
AGCGAAAT-GTTA-TTTCCTTTCACCGTGTAGAAAACAGAGTAGCATACAACAGACTGGAGTTACTCTTGATAGAGCAAG
TGTACATACACATACAGTAGCAGAAAGAACAGATGAC-ACATACACATGACACGCCGAC----GCATGATCTTCCCTGGA
GATATACCTCAAACCTCCAACAGCTTCTTGATGTCATTCTGCGGAAAC----AACATTCACCAAGTGAATTACCGTTCTG
TTGGAGACGAGGAATACAGAAAATAAACTGTTGAGTTAGAGCATCACCTCAATGCCGAGTGGGGACCAGGTCGGTGCATA
TCGGTTCATGACGTGCCCCTCTTTGTCAACTAGAAACTTGGTGAAGTTCCACTTGATACGTTCTCCAAATAGACCGCCCC
TCTCTGACTTCAAGAACTTGTACAGTGGGGCAGCATTGTTGCCGTTCACGTCAACCTGTTGTCAACTCAGAAATGTTTAG
ATAAAAAATAAGTGCATTTGTGTTTGGAAGCTAGCACGCACACAG---AAATGGAAACAAAGATTTTCGCTGGAATAGAC
CTTGCGAAAAATAGGAAACTCTGCTTGGAAGCGATTGCAAGCAAACTCCACAATCTTCTCATCGCTATCTGGTTCCTGTC
CAGCAAATTGATTGCAGGGGAACGCCAATATCTCCAATCCTAATTGCAGCAGAAAACACG-CAACGATAAATGAAGATTG
AAGACG-AAGTATAAAATGCAAGTTATTTGACCTGCACAATGGCACATCTTGTCTTACTATTTATTTATAACTCATCATA
CTAAAGACTTGCAGCCTAACATAAACTGTAGATTTCTC---TTCTATCATTTTTTTTAAGGTCTTCTATCATTATTTAGC
CCAAGGTTGG-TTCCAATCTCAAATCTGAAAACTAACTCAACTTGAATAGTTGGATCCAAACATAGCATAGCTTCTGTAA
TATCTGTTTGATGGGAAGCAAACTGTTGATCAGGTCCCACTTCTAGGACTTTTTG-------ACACCACTGTAGTCTTGT
AAAAGC-----AATATGACTTCAAAACACATTCAGTCATAGTATAAGCCTATACCTGAGAAGCCATGCTCTTGACCAGCT
AGGCAAGCTACAGGTAAGTTCTGCTGCTGC--TTTAGTAAGCAGGTGAAGTGTATTCTGTATGCACACATTATGACC--G
AGAAACCACTCAGATGCCACATCTG------TTGTGCTGATTGGATTGCATTTCTTATGAGTTTCTAC------------
-----------------------------------------------------TCTCTAGTGAAGGCAAAGACAATGGAT
TTTTCTCTAAAAAAA-TGGAACATTCCCCGCGATGTACAAAAGTGATGCATCGAAGAGTTTTAATCATTCCCCACAACA-
-AGATATAACCATACCATTTAAGTAC-----AAAG----CATTTATATCATATATCGTGTTCAGTTTTAATACAAATAGC
AAATGAACAA-----AAAACATGGTTAAGAACCGTACAACGTACCAAATTAGAATCTGCTAAACTACTAAATAAGGCTGG
GGTGAATATAATGCATTAGATAGAGCTACTGCTA-TAGTGGAA-TGACATGTGCAAAGCTATAGAAAAGTAGGTACCTTT
CTCCCTGTATTTCTCATAGAGCTGACCCAGTTCCGTGTAGTTGGAATTGGCCAGACCACTGCA--
>chr6B_283
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--------------------------------------------------TTTGTAATTCTGGTTGGCA-TGTGCAGGTG
GTGCTAGGGACTTTGGTGCAAGGAGGGTCCAAATCAAAGTCTAAGAAAGCCAGGAAACCGCCGGCCTTCGGT-CCGACTC
GCTCACCCGCGCTGCGCCAGACCTGGAGTCAGCAAGCTCAATACATAACCAAAACCTAACCTCACCACCCTCCGTTGTGA
CAAAGCGAGGGG---CTAGCTATGGGATATTTGACACGAGGAGTTCCAACATTGATATCAACTCTTCTAGAGGATAGCTC
ATATTTGTCGACACTTCCATCTCTCGAGAGATTTTTCTGTTCCCAAAAAGAATACCGGA---------------------
---------------------------------------------------TGCATC-AATATAATTTTGTTTATATTTC
TGCTATAT-GTTAGTTTCCTTTCACCATATGGAACACACCATAACATACA--AGGCTGGAGTTGCTCTTAGTAGGGTATA
AGAGT----ACATACAACATTGTAAAGAACAGATGGTAACATACACACGACACGCCGATT---GCACGATCTTCCCTGGA
G--ATACCTCAAACCTCCAACGGCTTCTTGATGTCATTCTG---------------------------------------
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>SNPs
-SSSS-S-S------------------------S--------------------------------------------S-
-------------S--------------------------S---------------------------------------
-----------------------S------------------S---------------------S------S--------
-------------------S-SS-S-------------------------------------------------------
--------------------------------------------------------------------------------
S---------------------S--S------------------------------------------------------
-----------------------------------S--------------------------------------------
-------S------------------------------------------------------------------------
------------------------------S--S------------SS---------S---------------S------
-------------S----S------------------------------------S------------------------
--------------------------------------------------SSSSS-S-SSSSS-----------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
---------------------------------S--------------------------------S-------------
---------------------------------------S----------------------------------------
------------------------------------------------------S----SS-S--SSSS---S-------
--------------------------------------------------------------------------------
----------------------S-------S------S-------------------------------------S----
--------------S---------S------S--------------S---S----S---S--------------------
--S--------------S------------SSSS-SS-SSS---------------------------------------
----S-S--S-----------------------------------S------S--SSSS----------S----S---S-
-------------S--S-----------S--S----------S--------S-SSSSSSSSS--------SS--------
---S-S-S--------S------------S--------------------------------------------S-----
---S--------------SS----SS-SS----------------------S-----------------S-----S---S
-----S-S-SSSS---------S--SSSSSS--------S---------S-----S----S--SS----S----------
-----S--S-S--SS-----------S-----------S-----S-----------------------------------
---------------S------------S---------------------------------------------------
--------------------S-SSS--------------------S----------------------------------
--------S----S---------------------------------S--------------------------------
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>forward_94
--------------------------------------------------------------------------ATCAGA
CCGACGGGATCAGT------------------------------------------------------------------
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>reverse_1658
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---------------------------------------------------------TGAACACAGCATCGCTTGTG---
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