>input_sequence_82767
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---------------------------------------------------------------ATGCCGAGTGGGGACCA
GGTCGGTGCATATCGGTTCATGACGTGCCCCTCTTTGTCAACTAGAAACTTGGTGAAGTTCCACTTGATACGTTCTCCAA
ATAGACCGCCCCTCTCTGACTTCAAGAACTTGTACAGTGGGGCAGCATTGTTGCCGTTCACGTCAACCTGTTGTCAACTC
AGAAATGTTTAGATAAAAAATAAGTGCATTTGTGTTTGGAAGCTAGCACGCACACAG---AAATGGAAACAAAGATTTTC
GCTGGAATAGACCTTGCGAAAAATAGGAAACTCTGCTTGGAAGCGATTGCAAGCAAACTCCACAATCTTCTCATCGCTAT
CTGGTTCCTGTCCAGCAAATTGA---------------------------------------------------------
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>chr2A_1_TraesCS2A01G582200
ACCCTGCATGATGTGAATG---TTTGTAGGGATTGTATGAAATCCTGAGTTTATCCGGCTCTTACAATCTGAACGAGGGC
CAGCAAAATCAAACCGACGGGATCAGCGTCACGCTCTGCAGCCCGGAGAGGCATGTCATTGGAGGTGTCCTGGGTGGAGC
ATTGGTGGCTGCCAGTACTGTGCAGGTAACAGCAATCTACTAGATCAGCCTCATCTGCTAAGATTCAGACATGGAACCAA
GCTCCT-GCATCCAGATCAACCTCATTTGCTAAGATTCAGA-------CATACAACATAAAAGTTTCTAATCCTGTTTGG
CATTGTGCAGGTGGTGCTAGGGACTTTTGTGCAAGGAGGATCCAAATCAAAGTCCAAGAAAGCCGCGAAACCACCGGCTT
TCGGTCCCGACTCGCTCACCGGCGCTGGGCCAGATGTGGTGTCGCCCAGCTCAGGACATAACCAAAACCTAACGTCGCCG
CCCTCCGTTGTATCGACGGGAGGGTGGCCTAGCTCTGGGATATTTGACACACGAAGTTCCAACATTGATATCAACTCTTC
TAGAGGATAGCTCATATTTGTCGACACTTCCATCTCTTGAGAGATTTTTCTGTTCCCAAAAAGAATACCAAATGTATACT
TTGGAATAGCCCATTCGGTTTTTGAGATCATTCTTATAGATTACTCTCCAGGCTGTGTTT-TGTTGCATC-GATATAATT
TTGTTTATATTTCAGCGAAATGTTA--TTTCCTTTCACCGTGTAGAAAACAGAGTAGCATACAACAGACTGGAGTTACTC
TTGATAGAGCAAGTGTACATACACATACAGTAGCAGAAAGAACAGATGACACATACACATGACACGCCGAC----GCATG
ATCTTCCCTGGAGATATACCTCAAACCTCCAACAGCTTCTTGATGTCATTCTGCGGAAAC----AACATTCACCAAGTGA
ATTACCGTTCTGTTGGAGACGAGGAATACAGAAAATAAACTGTTGAGTTAGAGCATCACCTCAATGCCGAGTGGGGACCA
GGTCGGTGCATATCGGTTCATGACGTGCCCCTCTTTGTCAACTAGAAACTTGGTGAAGTTCCACTTGATACGTTCTCCAA
ATAGACCGCCCCTCTCTGACTTCAAGAACTTGTACAGTGGGGCAGCATTGTTGCCGTTCACGTCAACCTGTTGTCAACTC
AGAAATGTTTAGATAAAAAATAAGTGCATTTGTGTTTGGAAGCTAGCACGCACACAG---AAATGGAAACAAAGATTTTC
GCTGGAATAGACCTTGCGAAAAATAGGAAACTCTGCTTGGAAGCGATTGCAAGCAAACTCCACAATCTTCTCATCGCTAT
CTGGTTCCTGTCCAGCAAATTGATTGCAGGGGAACGCCAATATCTCCAATCCTAATTGCAGCAGAAAACACG-CAACGAT
AAATGAAGATTGAAGACG-AAGTATAAAATGCAAGTTATTTGACCTGCACAATGGCACATCTTGTCTTACTATTTATTTA
TAACTCATCATACTAAAGACTTGCAGCCTAACATAAACTGTAGATTTCTC---TTCTATCATTTTTTTTAAGGTCTTCTA
TCATTATTTAGCCCAAGGTTGG-TTCCAATCTCAAATCTGAAAACTAACTCAACTTGAATAGTTGGATCCAAACATAGCA
TAGCTTCTGTAATATCTGTTTGATGGGAAGCAAACTGTTGATCAGGTCCCACTTCTAGGACTTTTTG-------ACACCA
CTGTAGTCTTGTAAAAGC-----AATATGACTTCAAAACACATTCAGTCATAGTATAAGCCTATACCTGAGAAGCCATGC
TCTTGACCAGCTAGGCAAGCTACAGGTAAGTTCTGCTGCTGC--TTTAGTAAGCAGGTGAAGTGTATTCTGTATGCACAC
ATTATGACC--GAGAAACCACTCAGATGCCACATCTG------TTGTGCTGATTGGATTGCATTTCTTATGAGTTTCTAC
-----------------------------------------------------------------TCTCTAGTGAAGGCA
AAGACAATGGATTTTTCTCTAAAAAAA-TGGAACATTCCCCGCGATGTACAAAAGTGATGCATCGAAGAGTTTTAATCAT
TCCCCACAACA--AGATATAACCATACCATTTAAGTAC-----AAAG----CATTTATATCATATATCGTGTTCAGTTTT
AATACAAATAGCAAATGAACAA-----AAAACATGGTTAAGAACCGTACAACGTACCAAATTAGAATCTGCTAAACTACT
AAATAAGGCTGGGGTGAATATAATGCATTAGATAGAGCTACTGCTA-TAGTGGAA-TGACATGTGCAAAGCTATAGAAAA
GTAGGTACCTTTCTCCCTGTATTTCTCATAGAGCTGACCCAGTTCCGTGTAGTTGGAATTGGCCAGACCACTGCAGGGAT
ATCAACTCAGGTGGT
>chr2D_1
ACCATGCATGATGTGCATTTC-TTTGTAGGGATTGTATGAAATCCTCAGTTTATCCGGCTCTTACAATCTGAACGAGGGC
CAGCAAAATCAGACCGACGGGATCAGTGTCACGCTCTGCAGCCCGGAGAGGCACATCATTGGAGGTGTTCTGGGTGGAGC
ATTGGTAGCTGCCAGTACTGTGCAGGTAACAGCAATTTACCAGA----CCTCAACAGAAAAGATTCAGACATGGAACAAA
GCTCGT-GCATCTACTTTATTTTGTTCCTAAACAGAAAAGA---GTATCATACAGCATAGAAGTTTCTAATCCTGTTTGG
CATTGTGCAGGTGGTGCTAGGGACTTTTGTGCAAGGAGGGTCCAAATCAAAGTCCAAGAAAGCCGCGAAACCACCGGCTT
TCGGTCCCGACTCACTCACCGGCGCTGGGCCAGACATGCCGTCACCCAGCTCAGGACATAACCAAAACCTAACGTCGCCG
CCCTCCGTTGTATCGACGGGAGGGTGGCCTAGCTCTGGGATATTTGACGCGCGAAGTTCCAACATTGATATCAACTCTTC
TAGAGGATAGCTCATATTTGCCGACACTTCCATCTCTCGAGAGATTTTTCTGTTCCCAAAAAGAATACCAAATGTATACT
TTGAAATAGCCCATTCGGTTTTTGAGATCATTCTTATAGATTATTCGCCAGGCTGTGTTGCTGTTGCATCAAATATAATT
TTGTTTGTATTTCGGCGAAATTGTTATTTTCTTTTCACCATGTAGAAAACAGAGTAGCATACAACAGGATGGAGTTACTC
TTGATAGAGCAAGTGTACATACACATACAGTAGCGAAAAGAACAGATGACACATACACATGAGTGAACACGCCCAGCATG
ATCTTCCCTGGAG--ATACCTCAAACCTCCAACAGCTTCTTGATGTCATTCTGCGAAAGCCGAAAACATTCACCAGATGA
ATTACCATGCTGGTGGAGAAGAACAATATGGAATATAAACTGTTGAGTTAGAGCATCACCTCAATGCCGAGTGGGGACCA
GGTCGGTGCATATCGGTTCATGACGTGCCCCTCTTTGTCAACTAGGAACTTGGTGAAGTTCCATTTGATACGCTCTCCGA
ATAGACCGCCTCTCTCTGACTTCAAGAACTTGTACAGCGGGGCAGCATTGTCGCCATTCACGTCGACCTGTTGCCAACTC
AGAAATGTTTAGATCGAAAATAAGTGCATTTGTGTTTGGAAGCTAGCACACACACAG---AAATAGGAAGGTTTCTTCGT
TGCTTGATAGACCTTGCGAAAAATAGGAAACTCTGCTTGGAAGCGATTGCAAGCAAACTCCACAATCTTCTCATCGCTAT
CTGGTTCCTGCCCGGCAAACTGATTGCAGGGGAAAGCCAATACCTCCAAACCTAATTGCAGCAGAAAACATG-CAAAGAT
AAATGAAAATTGAAGACG-AAG--TACAATGCAAGTGATTTGGTCTGCACAATGGCACGTCTCGTCTAACTGTTTATTTA
TAAT---TCATACTGAAGACTTGCAGCCTTACATAAACTGTACGGATTCCTCTTTCTAC---------------------
-CACTATTTAGCCCAACGATTTATTCCAATCTCCAATCTGAAAACTAACTCAACTTGTATAGTTAGAGATGAACACAGCA
TCGCTTGTGTCATATCTGTTTGATGCGAGGCAAACTGTTGCCCTGGTTCAACTTTTAGGACTTCTCAACAGTCAACACCA
CTTAAGTCTTATAAATGAACGAAAATACAACTTCAAAACACGTTCAGTCAT-GTATAAGCCTATACCTGAGAAGCCATGC
TCT-GAACAGCTAGGTAAGCTACGGGTAAAAGTCCCACGGTTTGTTTAGTAAGCAGGTGAAGTATATTCTGTATGCACAC
ACTATGAT--AAAGAAAATCCGTCAGTGCCATATATGCTGTGCTTGTGCTGGTTGAATTGCCTCTGTCATGAATTCTCAG
GTG-------TTATGAGCAAAGACGTGTATAAGGTCTTAATGAAACATTTTACTCACTTTGGGTTTCTATAGTAAAGGCA
AAGCCAATGGCTTGTTCTCTAAAAAAAATGGAACATTCCCAATGACATATAAAAGTGATGCATCGAAGAGCTTCAAGCAT
TCCCCACAATGAGATATACAACCAAACCATTTGACATC-----AATCACATCATTTACAACATATATTGTGTTCAGTTTC
AGCACAAATAGCGAATGCTCGATCAAGAAACAATGGTTAAGAGCCGTACAGAGTACCTAGTCAGT---------------
--------------------------------TAGAGCTACTGCGATTAGTGGAA-TGACATGTGCAAAGCTATAGAAAA
CAA-GTACCTTTCTCCCTGTATTTCTCATAGAGTTGGCCCAGCTCCGTGTAGTTGGAATTTGCCAGACCACTGCAAGGAT
ATCAACTCAGGTGGT
>chr2B_1
ACCCTCCATGATGGGCATTTGTTTTGTAGGGTTTGTATGAAATCTTGAGTTTATCCGGCTCTTACAATCTGAACGAGGGC
CAGCAAAATCAAACCGACGGGATCAGCGTCACGCTCTGCAGCCAGGAGAGGCATATCATTGGAGGTGTTCTGGGTGGAGC
ATTGGTAGCTGCCAGTACTGTGCAGGTAACAGCAGTCTACCAGA----CTTCAACTGAAAAGATACACCCATGTGACCCA
TCTAACAGCATCTACTTTATTTTGTTCCTAATAAACAGATAGGGGTATCATACAGCATAGAAGTTAATAATTCTGTTTGG
CA-TGTGCAGGTGGTACTAGGGACTTTTGTGCAAGCAGGGTCCAAATCAAAGTCCAAGAAAGCCGCGAAACCGCCGGCCT
TTGGTCCCGACTCGCTCACCGGCGCTGGGCCAGACGTGGCGTCGCCCAGCTCAGGACATAACCAAAACCTAACGTCGCCG
CCCTCCGTTGTATCGACGGGAGGGTGGCCTGGCTCTGGGATATTTGACACGAGAAGTTCCAGCATTGATATCAACTCTTC
TAGAGGATAGCTCATATTTGTCGACACTTCCATCTCTCGAGAGATTTTTCTGTTCCCAAAAAGAATACCAAATGTATACT
TTGAAATAGCCCATTCGGTTTTTGAGATCATTCTTAGAGATTACTCTCCAGGCTGTGTTT-TGTTGCATC-AATATATTT
TGTTTGTAATTTTGGGGAAATTA---------TTTCACCGTGTAGAAAACAGAGTAGCATACAACAGACTGGGGTTACTC
TTGATAGAGCAAGTGTACACACACATACAGTAGCGAAAAGAACAAATGACACATACACATGACACGCCGCC----GCATG
ATCTTCCCTGGAG--ATACCTCAAACCTCCAACAGCTTCTTGATGTCATTCTGCGAAAGGCGAAAACATTCAGCAGATGA
ATTACCATGCTGGTGGAGACGAACAATATGGAATATGAACTGTTGAGTTAGAGCATCACCTCAATGCCGAGTGGGGACCA
GGTCGGTGCGTATCGGTTCATGACGTGCCCCTCTTTGTCAACTAGAAACTTGGTGAAGTTCCATTTGATACGCTCTCCAA
ATAGACCGCCTCTCTCTGATTTCAAGAACTTGTACAGCAGGGCAGCATTGTTGCCATTCACGTCGACCTGTTGCCAACTC
AGAAATGTTTAGATCGAAAATAAATGCATTTGTGTTTGGAAGCTATCACACACACACAGAAAATAGAAAGGCATTTTTTC
CGCTGGATAAACCTTGCGAAAAATAGGAAACTCTGCTTGGAAGCGATTGCAAGCAAACTCCACAATCTTCTCATCACTAT
CTGGTTCCTGCCCGGCAAACTGATTGCAAGGGAACGCCAATATCTCCAATCCTGATCGCAGCAGAAAGCATTTCAAAGAT
AAATGAAGATTGAAGACAAAAG--TATACTGCAAGTTATTTGGCCTGCACAATGGCACATCTTGTCATACAATTTATTTA
TGAT---TCACCGTAAAGAGTATAAGCCTAACATAAAATGTGTATTTCTC---TTCTAC---------------------
-CGCTATTTAGCCCCAACGTTGACTCCAGTCTCCAATCTGAAAACTAGCTCAACTTGAATAGT-GGATCCAAACACAGAA
CGGTTTCTGTAATCTCTGTTTGATGGGAAGCAAACTGTTGACCAGGTTCAACTTCTAGGGACTTT---------------
-----GTCTTATGAAAGGATGAAAATACGACTT-AAAAAAAATTCAGTCATAGTATAAGCCTCTACCTGAGAAGCCATGC
TCTTGAGCAGCTAG-----CTACGGGTGAAGTTCCACAGC-TTGTCTAGTAAGCAGGTGAAGTGTATTCTTTATGCACAC
ATTATGACCAAGAGAAACTACTCAGGTGCCATATCTG------TTGTGTTGATTGAATTGCATCTGCTATGAGTTTGCAG
GGGTTATGACTTATGAGTAATGGCGCATATAAGGTCTTTATGAAACATTT-ACTCAATTTGGGTTA--ATAGTAAAGCCA
AAGCCAATGGCTTGTTCTCTAAAAAAA-TGGAACATTCCCCATGACATATAAAGGTGATGCATCGAAGAGCTTCAAGCAT
TACCCACAATGAGATATACAACCAAACCATTTTAATGGACATAAATCACATCATTTATAACATATATTGTGTTCAGTTTC
AGCACAAACAGCGAATGCTCAATCAGGAAACAATGGTTAAGAGCAATACAGAGTACCTAATCAGT---------------
--------------------------------CAGAGCTACTGCGATTAGTGGATTTGGCATCTGCAAAGCTATAGAAAA
CAA-GTACCTTTCTCCCTGTATTTCTCATAGAGTTGGCCCAGCTCCGTGTAGTTGGAATTTGCCAGACCACTGCAAGAAT
ATCAACTCAG-----
>SNPs
---------------S--S-------------------------------------------------------------
------------------------------------------------------S-------------S-----------
------S---------------------------------S---SSSS-----S---SS---------------------
----S-------S-SS-S-SSS-SS-SSSSS--S-SSS----------------S----S--------------------
---------------------------------------S----------------------------------------
----------------------------------S----S----------------------------------------
--------------------------------------------------S-----------------------------
-------------------------------------S------------------------------------------
---S-------------------------------------------------------------------S--------
------S------S-------SS-S------S------------------------------------------------
----------------------------------SS---------------------------------S----------
-------------SS----------------------------------------S--S----------------SS---
------S-S---S---------SS----SS---S----------------------------------------------
---------------------------------------------------------------S--------S-------
----------S--------------------------S-----------------S--------S--------S------
--------------SS---------------------------------S--------------S----SSS-SS-----
SSSS-S--------------------------------------------------------------------------
----------S--S-----S--------------------------------------------------S-----S---
----------------------SS--S---------------S-------------------------------------
---SSSS-----------------------------------S---------------SSSSSSSSSSSSSSSSSSSSSS
S--S------------S-S-S------------S-----------------------------------------S----
-S---------------------------------------S-----S-S---------------SS-------------
--SS------S------S---------S----------------------------------------------------
------S--------S-------S-----SS-SSS-SSSSSS--------------------------------------
------------------S------S-----S-----------------------S-------S-S----------SS-S
--------------------------------------------------------------------S----S------
---S------S--S---------------------------SS--SS--S--------------------S--S--S---
---------SS---S---S-----S-------S-S-S--------SS------------S-------S-----------S
-SS---------S----SS-----------SS----------S-------SS-----S---S--SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-----------------------------------
SS-S-----------------------------S--S-----S-----------------S--------------S----
---------------
>forward_870
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--------------------------------------------------ACATACACATGACACGCCGA----------
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>reverse_2437
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------------------------------------ACCCAGTTCCGTGTAGTTGG------------------------
---------------
