>input_sequence_82759
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ATGGAGATGGACAGTGAGCCGTCGACGCCGAGCCAATCCTCCTACTTCACCGGCTGCATGGCCTCCCCGGCGTGGCTGCC
GGCCGTGCACCGGAGCCCCGGGCGGTTCCACCTCCTGTCGCGCGAGGGCGGACGCGACAGCGGGCGGCGGGCGTGGAGGC
GGCTGCTCAGGCGGCTGGTGAGGAAGAGCGCCTGCTGCCCCAGCCCCAGGGCGCCGCCCCCCATGATCACCTTCCAGTAC
GACGCCGCCAGCTACGCCAAGAACTTCGACGAAGGCCGCCGGCCCTCCTCCGCCTCCGCCGCCGCCGACAAGCCGGCCGC
CGGCCAGCTGATCGACCCTGCCGAGCGCCTCAGATGA-------------------------------------------
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>chr1B_1_TraesCS1B01G349800
TTACGGATGCACGGAAGAGTTGTGGTTGGAGAAGATTAAGGTGGAGAGGCCCCACCAGCGAAAATCAAGGGGGGTTGATT
GGCGAGAGAGCAGTCCGTGAAGCCAGTCCGTACTAGAATGACGTAAGTGTAGCATTTTTGTTAATTAACAATTTTTTTTC
CCTTCCCTTGGATGTTGTGGGGCTGTGCACCTGTGTCCGAGTGATTCTGAGTAGAGGAGTACAAACTTTAGTGGGTGTAG
TTGGTGCTGGTAGCACTTGGCTACAATGATACAGTGCTACCAGTGCAATTGTGTTCTA-----GCAGCTGTATGTGTACC
GTGGGATCAGTCTGCGTGGGAT----------------AGTATGCAGCTGCTAGCAATGATCCTCGATTCGTTGCAAGGC
CATATATTGCAGTGGTCCTCTCACTAATGATACGTTTGAGGTTT-TAAACTCGTGTCATGATTGCAGCTCATGATGTGGT
GGCTAGCTTTCCAGCAAGGAGGCCAAAAAAACAAGTGGCCACCTTCAAGTTCAGAACAAA----TACTCATGAGTTAGTA
CGTGTGCACACTTTTGAAAATTCAAATTTGGGCAAGGAATAGTC--ACAA----TACAAAGTTCATGAC---AAATAAAA
TTGAAAACATGTGATTCAC-TTTAAAAGAGGTTTCCAATTGTGTAATTC-TTGGGGCACATGGCCCATGGTGAAATTGTT
GTGAGCACCTAGTAAACGTGGACAGTGGTAGTTA---AAAAGAAGTGCTATTCAGCCGAACCCAAAGACAAAATAATTTA
AACTTCCGAATTTTTAAGTGGTGACAGAAATTTGGAACCATCCCTTGTCATGGCATCCCCCTTTGTCTCTTCCCTCCTAA
TCCAACCCTCCCTGACACCTTTTTTTCAGTATATAACCTTATCAAAACCCCTCACTCACATTCAGCTGAGACCTCAGACT
CACTCACACACAGCTCTGCCTCAGCGGCTCTGCCACAGCAGCGCCTCTGTCTCTCGCTAGCAGTGCTACCCGAGACGTAC
ATGGAGATGGACAGTGAGCCGTCGACGCCGAGCCAATCCTCCTACTTCACCGGCTGCATGGCCTCCCCGGCGTGGCTGCC
GGCCGTGCACCGGAGCCCCGGGCGGTTCCACCTCCTGTCGCGCGAGGGCGGACGCGACAGCGGGCGGCGGGCGTGGAGGC
GGCTGCTCAGGCGGCTGGTGAGGAAGAGCGCCTGCTGCCCCAGCCCCAGGGCGCCGCCCCCCATGATCACCTTCCAGTAC
GACGCCGCCAGCTACGCCAAGAACTTCGACGAAGGCCGCCGGCCCTCCTCCGCCTCCGCCGCCGCCGACAAGCCGGCCGC
CGGCCAGCTGATCGACCCTGCCGAGCGCCTCAGATGACTCCTTG------------ATTTTCCTCTGATTTTCCTTGTCG
TCGGTTCGCGCGTAGCTGTTGTTCCTGGGTGGCGGTAGTTGCGACGTCGGTTTCCATGTCTCGGCGGAAAATCGCTGCTT
GTACAGAAGATGCAGACTGTTCTTGTCGAAATG----TGACTCCCTCTCGAGTCTCGTCTCGTCTCGTATCTCCTTGTCT
TCGTGTGATGATCCGATCGAAC----GAACGAGTTGTCACCACGCGCGCGTACGAACCGGGTGGTGTGACTGGCCGTGTG
AACAGTGGCCAAATTGGCCGTCAATTTCCGTTTCGTCCTTGACGAATCACAAGGACGGACGCATCGCTGCTGCTCGGGAC
GACG-------AACTCGGCGCACTCGCCGAGCAGGTAGTGCAGTAGAGCGCACTCATCGACCGTCGGCAAGGGGGG-AAT
CGATTCGATGGGTAGGGAAGGGAAAGAGATGCGCTAATCAATTTGGCCGGTGGAGCCAGGAATAATGTGACGTTTTTTTT
A-AGAGATAAGTGAGCTGAACGCAAAGTGGGGCTGATCAACCACTGGGGGAGTCAAGGTAATCATGACAGGATCATGGAC
GAGAGAGAAAAGGGGGGCAAAGAGTCCCGGTTACGCTCGGCCGTGTCGGCCTCTGGTCCAAATATCCGGTGGAATGGAAT
GTTCACAAAAGGGGAAAAGGATCGGGTGGAGAGATGGCCTTCGGCTTGGGAACTTGCGTCCGGGCCAACGTGCCTCGGCA
ACATGGTCAGATCCTTGTTGACGTGGCCTTGCCGCGG----CATGGCATCGGGTGTGTACCGGCACGAGCAGCTACATTT
TGGTTGATTAT-----TAGTTCGTTGTAGTGTCAGGTCTGGTTGTCAAGTGATCACACAGGTGCCCCCACTCATCCGCAT
GATGGCTCGGTAACTACTGTCTGCTGGTCTAATGAAACCGTTTGAATGCATTCGTCAGTGACTCCGTGGCCCAATGGATA
AGGCGCTGGTCTACGAAACCAGAGATTCTGGGTTC
>chr1D_152
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-----------------------------------------------------------------------TTTTTTTTC
CCTTCCCTTGGATGTTGTGGGGCTGTGTACCTGTGTCCGAGTGATTCTGAGTAGAAGAGTACAAACTTTAGTGGGTGTAG
TTGGCGCTGGTAGCACTTGGCTACAATGATACAGTGCTACCAGTGCAATTGTGTTCTA-----GCAGCTGTATGTGTACC
GTTGGATCTGAAAATGATACGTTTTATAATGTCCATGGAGTATGCAGCTGCTCGCAATGATCCTCAATTGCAATGG----
CATCTATTGCAGTGGTCCACTCACTAATGATACGTTTGAGGTTTTTAAACTCGTGTCATGATTGCAGCTAATGATGTGGT
GACTAGCTTTCCAGCAAGGAGGCCAAATAAACAAGTGGCCACCTTTAAGTTCAAAACAAA----TACTCATGAGTTAGTA
CGTGTGCACTATTTTCAAAATTTAAATTTCGGCAAGGATTGGTCTAACAA----TACAAAGTTTATGTC---AAATGAAT
TTGAAAACATTGGATTCACATTTAAAAGAAGTTTCCAATGGTGTAATTTTTTGCGGCACATAGCCCATGGTGAAATTGTT
GTAAACACCTA---------------------------------------------------------------------
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>chr1A_153
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------------------------------------------------------------------------TTTTTTTC
C-TTCCCTTGGATATTGTGGGGCTGTGTACCTGTGTCCGAGTGATTCTGAGTAGAGGAGTACAAACTTTAGTGGGTGTAG
TTG------------------------------GTGCTACCAGTGCAATTGTGTTCTACTGTAGCAGCTGTATGTGTGCT
---------------GTGGGAT----------------AGTATGCAGCTGCTAGCAATGATCCTCGGTTGCAATGG----
CATCTATTGCGGTGGTCCTCTCGCTAATGATACATTTGAGGT-TTTAAACTCGTGTCATGATTGCAGCTAATGATGTGGT
GACTAG--TTCCAGCAAGGAGGCTTAATAAACAAGTGGTCACCTTTAAGTTCAAAACAAATACGTACTCATGAGTTAGTA
CGTGTGCACGCCTTTGAAAATTTAAATTGGGTCAAGGATTGCTCCAGCAAATACTACAAATTTTATATTACTAAATAAAG
TTGATACCATTGGATTCACATTTAAAAGCAGTTTTAGTGGTGTGC--TTTTTGGGGCAC--AGCCCATGGTGAAATTGTT
GTAAGCACCTAGTAAACATGGACAGTGGGAGTTA---AAAAGAAGTGCTATTCAGCCGAACCGAAAGACAAAATAACTGA
GACTTCTGAATTTTTAAGTGGTGACCGAAATTTGGAACCATCCCCCTTTG-----------TTTGTCTCTTCCCTCCTAA
TCCAACCCTCTCTGAAACG--------AGTATATAACCTTATCAAAACCCCTCACTCACATTCAGCTGAGACCTCAG---
-ACTCACACACAGCTCTGCCTCAGCG-CTCTGCCACAG-----------------------------------CA--TAC
ATGGAGATGGACAGTGAGCCGTCGACGCCGAGCCATTCCTCCTACTTCACCGGCTGCATGGCCTCCCCGGCGTGGCTGCC
GGCCGTGCACCGGAGCCCCGGGCGGTTCCACCTCCTGTCTCGCGACGGCGGCCGCGACAGCGGGCGGCGGGCGTGGAGGC
GGCTGCTCAGGCGGCTGGTGAGGAAGAGCGCCTGCTGCCCCAGCCCCAGGGCGCCGCCCCCCATGATCACCTTCCAGTAC
GACGCCGCCAGCTACGCCAAGAACTTCGACGAAGGACGCCGGCCCTCCTCCGCCTCCGCCACCGCCGACAAGCCGGCCGC
CGGCGAGCTGATCGACCCGGCCGAGCGCCTCAGATGACTCCTTG------------A-----------TTTTCCTTGTCG
TCGGTTCACGTGTAGCTGTTGTTCTTGGGTGGCGGTAGTTGCGACGTCGGTGTCCATGTCTCGGCGGAAAATCGCTGCTT
GTACAGAAGATGCAGACTGTTCTTGTTCAAATG----TGACTCCCTCTCGAGTCTCGTCTCGTCTC-----TCCTTGTCT
CCCTGCGATGATCCGATCGAACGAACGAACGAGTTGTGACCACGCGCGCGTACGAACCGGGTGGTG--ACCGGCCATGTG
AACAGTGGCCAAATTGGCCGTCAATTTCCGTTTCGTCCTCGACAAACCACAAGGACAGACACATCGCTGCTGCTCGGGAC
GACGAAGTACGAACTCGGCGCACTCGCCGAGCAGGTAGTGCAGTAGAGCGCACTCATCGACCGTCGGCAAGGGGGG-AAT
AGATTCGCTGGGCAGGGAAGGGAAAGAGATGTGCTAATCAATTTGGCCGGTGGAGCCGGGAACAACATGACGCTTTCTTT
AGAGAGATAAGTGAGCTGAACGCAAAGTGGGGCTGATCAACCACTGGGGGAGTCAAGGTAATCATGACAGGATCATGGAC
GAGAGAGAAAAGGGGGGCGAAGAGTCCCGGTTACGCTCGGCCGTGTCGGCCTCTGGTCCAGATATCCGGTGGAATGGAAT
GTTCACAAAAGGGGAAAAGGATCGGGTGGAGAGATGGCCTTCGGCTTGGGAACTTGCGTCCAG-------------GGCA
ACATGGTTAGATCCATGTTGACGTGGCCTTGCCGCGGCCGCCATGGCATCGGCTGTGTACCAGCAGGAGCAGCTACATTT
-GGTTGATTAT-----TAGTTCGTTGTGATGTCAGGCCTGTTG-------------------------------------
--------GGTAACTAGTGCCTGCTGGTGTGATGTTAACGTTTGATTACATTCGTTAGTGACTCTGTGGCCCAATGGATA
AGGCGCTGGTCTACGAAACCAGAGATTCTGGGTT-
>chr1D_692
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--------CTAGTAAACGCGGACAGTGGGATCAAGTTAAAAGAAGTGCTATTCAGCCGAACCCAAAGACAAAATAGCTGA
AATTTCTGAATTTTTAAGTGGTGACAGAAATTTGGAACCATCACATGTCATGGCATCCCCCTTTGTCTCTTCCCTTCTAA
TCCAACTCTCTCTGAGACCTTCATGAA--TATATAACCTTATCAAAACCCCTCACTCACATTCAGTTGAGACCTCAG---
-ACTCACACCCAGCTCTGCCTCAGCGGCTCAGCCACAGCAGCGCCTCTGTCTCTCGCTAGCTGTCCTGCCCGACA--TAC
ATGGAGATGGACAGTGAGCCGTCGACGCCGAGCCAGTCCTCCTACTTCACCGGCTGCATGGCCACCCCGGCGTGGCTGCC
GGCCCTGCAGCGGAGCCCCGGGCGGTTCCACCTCCTGTCGCGCGACGGCGGGCGCGACGGCGGGCGGCGGGCGTGGAGGC
GGCTGCTCAGGCGGCTGTTGAGGAAGAGCGCCTGCTGCCCCAGCCCCAGGGCGCCGCC---CATGATCACCTTCCAGTAC
GACGCCGCCAGCTACGCCAAGAACTTCGACGAAGGCCGCCGGCCCTCCTCCGCCTCCGCCGCCGCCGACAAGCCGGCCGC
CGGCCAGCTGATCGACCCGGCCGAGAGCCTCAGATGACTCCTTGTGTTTTCCTCTGA-----------TTTTCCTTGTCG
TCGGTTCGCGCGTAGCTGTTGTTCCTCGGTGGCGGTAGTTGCGACGTCGGTGTCCATGTCTCGGCGGAAAATCGCTGCTT
GTACAGAAGATGCAGACTGTTCTTGTCCAAATGTGCATGACTCCCTCTCGAGTCTCGTCTCGTCGC-----TCCTTGTCT
TCCTGTGATGATCCGAACGAACGAACGAA----TTGTGACCACGCGCGCGTACAAACCGGGTGGTG--ACTGGCCATGTG
AATAGTGACCAAATTGGCCGTCAATTTCCGTTTCGTCCTTGACAAACCACAAGGACGGACACATCGCTGCTGCTCGGGAC
G-------ACGAACTCGGCGCACTCGCCGAGCAGGTAGTGCAGTAGAGCGCACTCGTCGACCGTCGGCAAGGGGGGGAAT
AGATTCGATCGGTAGGGAAGGGAAAGAGATGTGCTAATCAATTTGGCCGGTGGAGCCAGGGAGAATATGACGTTATTTT-
--AGAGATAAGTGAGCTGAACGCAAAGTGGGGCTGATCAACTACTGGGGGAGTCAAGCTAATCATGACAGGATCATGGAC
GGGAGAGAAAAGGGGGGCAAAGAGTCCCGGTTACGCTCGACCGTGTCGGC--CTGGTCCAAATATCCGGTGGGATGGAAT
GTTCACAAAAGGGGAAAAGGATCGGGTGGAGAGATGGCCTTCAGCTTGGGAACTTGCGTCCAG-------------GGCA
ACATGGT--------------------CTTGCCGCGG---CCATGGCATCGGCTGTGTACCAGCAGGAGCAGCTACATTT
A-GTTGATTATTAGAGTAGTTCGTTGTGATGTCAGGTCTGGTTGGCAAGTGATCACACAGGTGCCCCCACTAATCCGCGT
GATGGCTCGGTAACTAGTGCCTGCTGGTGTAAAGCTAACGTTTGATTACATTCGTCAGTGACTCCGTGGCCCAATGGATA
AGGCGCTGGTCTACGAAACCAGAGATTCTGGGTTC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
---------------------------S----------------------------------------------------
----S---------------------------------------------------------------------------
--S-----S-SSSSS------------------------------------------------------SSSSSSSSSSS
---S-----------------------------------------------------------------S----------
-S-------------------------S-----------------S-------S--------------------------
---------S------------S---------------S-S----------------------S---S-----------S
----------SS-----------------S---------S--------S------------S------------------
--S-------------------------S-----------------------------------------------S-S-
------S-------------------------------------S-----------------------------------
----------S----S-----SS-SSS--------------------------------------------------SSS
S------------------------------------------------------------S--S--S-----S-SS---
-----------------------------------S--------------------------------------------
---------------------------------------------S-----S----------------------------
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------------------S--------------------------------------SSSSSSSSSSS------------
---------------------------------------------------S----------------------------
---------------------------S--------------------------------------SSSSS---------
--S----------------------------------S----------------------------SS-------S----
-------------------------------------------S--S-------------S-------------------
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S------------------------------S------------------------------S---S-------------
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-------------------------------------------------------------S-SSSSSSSSSSSSS----
-------S------S-------------------------------------S--------S---S--------------
S--------------------------SS---------------S--------------------------S------S-
----------------S--S--------S-----SS-S-------S-S--------------------------------
-----------------------------------
>forward_27
-------TGCACGGAAGAGTTGTGGTT-----------------------------------------------------
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>reverse_1076
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-----------------------------------ATCCTCCTACTTCACCGGCT-------------------------
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>forward_95
---------------------------------------------------------------------------TGATT
GGCGAGAGAGCAGTC-----------------------------------------------------------------
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>reverse_1492
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---------------------------------------------------TTCCATGTCTCGGCGGAAAA---------
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