>input_sequence_82754
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----------------ATGGAGATGGACAGTGAGCCGTCGACGCCGAGCCATTCCTCCTACTTCACCGGCTGCATGGCCT
CCCCGGCGTGGCTGCCGGCCGTGCACCGGAGCCCCGGGCGGTTCCACCTCCTGTCTCGCGACGGCGGCCGCGACAGCGGG
CGGCGGGCGTGGAGGCGGCTGCTCAGGCGGCTGGTGAGGAAGAGCGCCTGCTGCCCCAGCCCCAGGGCGCCGCCCCCCAT
GATCACCTTCCAGTACGACGCCGCCAGCTACGCCAAGAACTTCGACGAAGGACGCCGGCCCTCCTCCGCCTCCGCCACCG
CCGACAAGCCGGCCGCCGGCGAGCTGATCGACCCGGCCGAGCGCCTCAGATGA---------------------------
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>chr1A_1_TraesCS1A01G337200
GGCATCCGACATTAGATGTTAGGTGTTGGAGCGATGTCTGTTTGGTATTAGGCTTGGATATTCGGCACCCCTTCATCACG
GGGATAGGAGTAGCGACAGGTGTTGCCAAGATGGTAGTTTCAGGCTTACTGATGTATTACCCTGTAAGGACTTTGTGAAT
AATTAATAAAATGACTGCATGCATCGCCCAGATGCAGAGGCCGGGTACATCTCCTTTTTTTTTAAAAAAAAATCATCTTT
TAGTTGACATTTTTTTCCTTCCCTTGGATATTGTGGGGCTGTGTACCTGTGTCCGAGTGATTCTGAGTAGAGGAGTACAA
ACTTTAGTGGGTGTAGTTGG------------------------------TGCTACCAGTGCAATTGTGTTCTACTGTAG
CAGCTGTATGTGTGCT---------------GTGGGAT----------------AGTATGCAGCTGCTAGCAATGATCCT
CGGTTGCAATGG----CATCTATTGCGGTGGTCCTCTCGCTAATGATACATTTGAGGT-TTTAAACTCGTGTCATGATTG
CAGCTAATGATGTGGTGACTAG--TTCCAGCAAGGAGGCTTAATAAACAAGTGGTCACCTTTAAGTTCAAAACAAATACG
TACTCATGAGTTAGTACGTGTGCACGCCTTTGAAAATTTAAATTGGGTCAAGGATTGCTCCAGCAAATACTACAAATTTT
ATATTACTAAATAAAGTTGATACCATTGGATTCACATTTAAAAGCAGTTTT-AGTGGTGTGCTTTTTGGGG---CACAGC
CCATGGTGAAATTGTTGTAAGCACCTAGTAAACATGGACAGTGGGAGTTA---AAAAGAAGTGCTATTCAGCCGAACCGA
AAGACAAAATAACTGAGACTTCTGAATTTTTAAGTGGTGACCGAAATTTGGAACCATCCCCCTTTG-----------TTT
GTCTCTTCCCTCCTAATCCAACCCTCTCTGAAACG--------AGTATATAACCTTATCAAAACCCCTCACTCACATTCA
GCTGAGACCTCAG----ACTCACACACAGCTCTGCCTCAGCG-CTCTGCCACAG--------------------------
---------CA--TACATGGAGATGGACAGTGAGCCGTCGACGCCGAGCCATTCCTCCTACTTCACCGGCTGCATGGCCT
CCCCGGCGTGGCTGCCGGCCGTGCACCGGAGCCCCGGGCGGTTCCACCTCCTGTCTCGCGACGGCGGCCGCGACAGCGGG
CGGCGGGCGTGGAGGCGGCTGCTCAGGCGGCTGGTGAGGAAGAGCGCCTGCTGCCCCAGCCCCAGGGCGCCGCCCCCCAT
GATCACCTTCCAGTACGACGCCGCCAGCTACGCCAAGAACTTCGACGAAGGACGCCGGCCCTCCTCCGCCTCCGCCACCG
CCGACAAGCCGGCCGCCGGCGAGCTGATCGACCCGGCCGAGCGCCTCAGATGACTCCTTGA------------TTTTCCT
TGTCGTCGGTTCACGTGTAGCTGTTGTTCTTGGGTGGCGGTAGTTGCGACGTCGGTGTCCATGTCTCGGCGGAAAATCGC
TGCTTGTACAGAAGATGCAGACTGTTCTTGTTCAAATG----TGACTCCCTCTCGAGTCTCGTCTCGTCTC-----TCCT
TGTCTCCCTGCGATGATCCGATCGAACGAACGAACGAGTTGTGACCACGCGCGCGTACGAACCGGGTGGTG--ACCGGCC
ATGTGAACAGTGGCCAAATTGGCCGTCAATTTCCGTTTCGTCCTCGACAAACCACAAGGACAGACACATCGCTGCTGCTC
GGGACGACGAAGTACGAACTCGGCGCACTCGCCGAGCAGGTAGTGCAGTAGAGCGCACTCATCGACCGTCGGCAAGGGGG
G-AATAGATTCGCTGGGCAGGGAAGGGAAAGAGATGTGCTAATCAATTTGGCCGGTGGAGCCGGGAACAACATGACGCTT
TCTTTAGAGAGATAAGTGAGCTGAACGCAAAGTGGGGCTGATCAACCACTGGGGGAGTCAAGGTAATCATGACAGGATCA
TGGACGAGAGAGAAAAGGGGGGCGAAGAGTCCCGGTTACGCTCGGCCGTGTCGGCCTCTGGTCCAGATATCCGGTGGAAT
GGAATGTTCACAAAAGGGGAAAAGGATCGGGTGGAGAGATGGCCTTCGGCTTGGGAACTTGCGTCCAG------------
-GGCAACATGGTTAGATCCATGTTGACGTGGCCTTGCCGCGGCCGCCATGGCATCGGCTGTGTACCAGCAGGAGCAGCTA
CATTT-GGTTGATTAT-----TAGTTCGTTGTGATGTCAGGCCTGTTG--------------------------------
-------------GGTAACTAGTGCCTGCTGGTGTGATGTTAACGTTTGATTACATTCGTTAGTGACTCTGTGGCCCAAT
GGATAAGGCGCTGGTCTACGAAACCAGAGATTCTGGGTTTGATCCCCAGCAGAGTTGACTGCCTTTTGTTTCCGCCCTCT
TAGTTTTTAGTGTGATCAGAG
>chr1D_238
TTTTATTGACTTTTTTTTTC------------------------------------------------------------
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----------------CCTTCCCTTGGATGTTGTGGGGCTGTGTACCTGTGTCCGAGTGATTCTGAGTAGAAGAGTACAA
ACTTTAGTGGGTGTAGTTGGCGCTGGTAGCACTTGGCTACAATGATACAGTGCTACCAGTGCAATTGTGTTCTA-----G
CAGCTGTATGTGTACCGTTGGATCTGAAAATGATACGTTTTATAATGTCCATGGAGTATGCAGCTGCTCGCAATGATCCT
CAATTGCAATGG----CATCTATTGCAGTGGTCCACTCACTAATGATACGTTTGAGGTTTTTAAACTCGTGTCATGATTG
CAGCTAATGATGTGGTGACTAGCTTTCCAGCAAGGAGGCCAAATAAACAAGTGGCCACCTTTAAGTTCAAAACAAA----
TACTCATGAGTTAGTACGTGTGCACTATTTTCAAAATTTAAATTTCGGCAAGGATTGGTCTAACAA----TACAAAGTTT
ATGTC---AAATGAATTTGAAAACATTGGATTCACATTTAAAAGAAGTTTCCAATGGTGTAATTTTTTGCGGCACATAGC
CCATGGTGAAATTGTTGTAAACACCTA-----------------------------------------------------
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>chr1B_250
------------TTTTTTTC------------------------------------------------------------
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----------------CCTTCCCTTGGATGTTGTGGGGCTGTGCACCTGTGTCCGAGTGATTCTGAGTAGAGGAGTACAA
ACTTTAGTGGGTGTAGTTGGTGCTGGTAGCACTTGGCTACAATGATACAGTGCTACCAGTGCAATTGTGTTCTA-----G
CAGCTGTATGTGTACCGTGGGATCAGTCTGCGTGGGAT----------------AGTATGCAGCTGCTAGCAATGATCCT
CGATTCGTTGCAAGGCCATATATTGCAGTGGTCCTCTCACTAATGATACGTTTGAGGTTT-TAAACTCGTGTCATGATTG
CAGCTCATGATGTGGTGGCTAGCTTTCCAGCAAGGAGGCCAAAAAAACAAGTGGCCACCTTCAAGTTCAGAACAAA----
TACTCATGAGTTAGTACGTGTGCACACTTTTGAAAATTCAAATTTGGGCAAGGAATAGTC--ACAA----TACAAAGTTC
ATGAC---AAATAAAATTGAAAACATGTGATTCAC-TTTAAAAGAGGTTTCCAATTGTGTAATTC-TTGGGGCACATGGC
CCATGGTGAAATTGTTGTGAGCACCTAGTAAACGTGGACAGTGGTAGTTA---AAAAGAAGTGCTATTCAGCCGAACCCA
AAGACAAAATAATTTAAACTTCCGAATTTTTAAGTGGTGACAGAAATTTGGAACCATCCCTTGTCATGGCATCCCCCTTT
GTCTCTTCCCTCCTAATCCAACCCTCCCTGACACCTTTTTTTCAGTATATAACCTTATCAAAACCCCTCACTCACATTCA
GCTGAGACCTCAGACTCACTCACACACAGCTCTGCCTCAGCGGCTCTGCCACAGCAGCGCCTCTGTCTCTCGCTAGCAGT
GCTACCCGAGACGTACATGGAGATGGACAGTGAGCCGTCGACGCCGAGCCAATCCTCCTACTTCACCGGCTGCATGGCCT
CCCCGGCGTGGCTGCCGGCCGTGCACCGGAGCCCCGGGCGGTTCCACCTCCTGTCGCGCGAGGGCGGACGCGACAGCGGG
CGGCGGGCGTGGAGGCGGCTGCTCAGGCGGCTGGTGAGGAAGAGCGCCTGCTGCCCCAGCCCCAGGGCGCCGCCCCCCAT
GATCACCTTCCAGTACGACGCCGCCAGCTACGCCAAGAACTTCGACGAAGGCCGCCGGCCCTCCTCCGCCTCCGCCGCCG
CCGACAAGCCGGCCGCCGGCCAGCTGATCGACCCTGCCGAGCGCCTCAGATGACTCCTTGA-TTTTCCTCTGATTTTCCT
TGTCGTCGGTTCGCGCGTAGCTGTTGTTCCTGGGTGGCGGTAGTTGCGACGTCGGTTTCCATGTCTCGGCGGAAAATCGC
TGCTTGTACAGAAGATGCAGACTGTTCTTGTCGAAATG----TGACTCCCTCTCGAGTCTCGTCTCGTCTCGTATCTCCT
TGTCTTCGTGTGATGATCCGATCGAAC----GAACGAGTTGTCACCACGCGCGCGTACGAACCGGGTGGTGTGACTGGCC
GTGTGAACAGTGGCCAAATTGGCCGTCAATTTCCGTTTCGTCCTTGACGAATCACAAGGACGGACGCATCGCTGCTGCTC
GGGACGACG-------AACTCGGCGCACTCGCCGAGCAGGTAGTGCAGTAGAGCGCACTCATCGACCGTCGGCAAGGGGG
G-AATCGATTCGATGGGTAGGGAAGGGAAAGAGATGCGCTAATCAATTTGGCCGGTGGAGCCAGGAATAATGTGACGTTT
TTTTTA-AGAGATAAGTGAGCTGAACGCAAAGTGGGGCTGATCAACCACTGGGGGAGTCAAGGTAATCATGACAGGATCA
TGGACGAGAGAGAAAAGGGGGGCAAAGAGTCCCGGTTACGCTCGGCCGTGTCGGCCTCTGGTCCAAATATCCGGTGGAAT
GGAATGTTCACAAAAGGGGAAAAGGATCGGGTGGAGAGATGGCCTTCGGCTTGGGAACTTGCGTCCGGGCCAACGTGCCT
CGGCAACATGGTCAGATCCTTGTTGACGTGGCCTTGCCGCGG----CATGGCATCGGGTGTGTACCGGCACGAGCAGCTA
CATTTTGGTTGATTAT-----TAGTTCGTTGTAGTGTCAGGTCTGGTTGTCAAGTGATCACACAGGTGCCCCCACTCATC
CGCATGATGGCTCGGTAACTACTGTCTGCTGGTCTAATGAAACCGTTTGAATGCATTCGTCAGTGACTCCGTGGCCCAAT
GGATAAGGCGCTGGTCTACGAAACCAGAGATTCTGGGTTCGATCCCCAGCTACAT--------TTTTGTTTCTGCCCTCC
TAGTTTTTAGTGAGATCATAG
>chr1D_753
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------------------------CTAGTAAACGCGGACAGTGGGATCAAGTTAAAAGAAGTGCTATTCAGCCGAACCCA
AAGACAAAATAGCTGAAATTTCTGAATTTTTAAGTGGTGACAGAAATTTGGAACCATCACATGTCATGGCATCCCCCTTT
GTCTCTTCCCTTCTAATCCAACTCTCTCTGAGACCTTCATGAA--TATATAACCTTATCAAAACCCCTCACTCACATTCA
GTTGAGACCTCAG----ACTCACACCCAGCTCTGCCTCAGCGGCTCAGCCACAGCAGCGCCTCTGTCTCTCGCTAGCTGT
CCTGCCCGACA--TACATGGAGATGGACAGTGAGCCGTCGACGCCGAGCCAGTCCTCCTACTTCACCGGCTGCATGGCCA
CCCCGGCGTGGCTGCCGGCCCTGCAGCGGAGCCCCGGGCGGTTCCACCTCCTGTCGCGCGACGGCGGGCGCGACGGCGGG
CGGCGGGCGTGGAGGCGGCTGCTCAGGCGGCTGTTGAGGAAGAGCGCCTGCTGCCCCAGCCCCAGGGCGCCGCC---CAT
GATCACCTTCCAGTACGACGCCGCCAGCTACGCCAAGAACTTCGACGAAGGCCGCCGGCCCTCCTCCGCCTCCGCCGCCG
CCGACAAGCCGGCCGCCGGCCAGCTGATCGACCCGGCCGAGAGCCTCAGATGACTCCTTGTGTTTTCCTCTGATTTTCCT
TGTCGTCGGTTCGCGCGTAGCTGTTGTTCCTCGGTGGCGGTAGTTGCGACGTCGGTGTCCATGTCTCGGCGGAAAATCGC
TGCTTGTACAGAAGATGCAGACTGTTCTTGTCCAAATGTGCATGACTCCCTCTCGAGTCTCGTCTCGTCG-----CTCCT
TGTCTTCCTGTGATGATCCGAACGAAC----GAACGAATTGTGACCACGCGCGCGTACAAACCGGGTGGTG--ACTGGCC
ATGTGAATAGTGACCAAATTGGCCGTCAATTTCCGTTTCGTCCTTGACAAACCACAAGGACGGACACATCGCTGCTGCTC
GGGACGACG-------AACTCGGCGCACTCGCCGAGCAGGTAGTGCAGTAGAGCGCACTCGTCGACCGTCGGCAAGGGGG
GGAATAGATTCGATCGGTAGGGAAGGGAAAGAGATGTGCTAATCAATTTGGCCGGTGGAGCCAGGGAGAATATGACGTTA
TTTT---AGAGATAAGTGAGCTGAACGCAAAGTGGGGCTGATCAACTACTGGGGGAGTCAAGCTAATCATGACAGGATCA
TGGACGGGAGAGAAAAGGGGGGCAAAGAGTCCCGGTTACGCTCGACCGTGTCGGC--CTGGTCCAAATATCCGGTGGGAT
GGAATGTTCACAAAAGGGGAAAAGGATCGGGTGGAGAGATGGCCTTCAGCTTGGGAACTTGCGTCCAGGGCAACA-----
----------------------------TGGTCTTGCCGCGG---CCATGGCATCGGCTGTGTACCAGCAGGAGCAGCTA
CATTTA-GTTGATTATTAGAGTAGTTCGTTGTGATGTCAGGTCTGGTTGGCAAGTGATCACACAGGTGCCCCCACTAATC
CGCGTGATGGCTCGGTAACTAGTGCCTGCTGGTGTAAAGCTAACGTTTGATTACATTCGTCAGTGACTCCGTGGCCCAAT
GGATAAGGCGCTGGTCTACGAAACCAGAGATTCTGGGTTCGATCCCCAGCGGAGTCGA----------------------
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>SNPs
SSSSSSS---S--SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS-------------S--------------------------------------------------
--------------------------------------------------------------------------SSSSS-
-------------S-S----------------------------------------------------------------
--S-----------------------S-----------S----------S------------------------------
---------------------------------------SS-------------S---------------------SSSS
-------------------------S-S----------------S--S---------S--S-S---SSSS------S---
--S-SSSS-------S----S-S---------------------S-----S--S------SS-----S--------S---
---------------------------------S--------------------------------------------S-
----------------S------------------------S------------------SSS-SS--------------
-------------------------------S--S---------------------------------------------
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---------------------------------------------------S----------------------------
-------------------------------------------------------S-----------S------------
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---------------------------------------------------S------------------------S---
--------------------S-----------------------------------------------------------
------------S--S-------------S--------------------------------------------------
-------------------------------S------------------------------------------------
-----S----S----------------SSSS--------------------------------------------S----
--------------------------------------------S----------------S------------------
---------SSSSSSS----------------------------------------------------------------
------------S----S--------------------------------------------S----S--S------S--
-S----S-------------------------------------------------------------------------
-----------------------S-----------------------------------------S--------------
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------------S------S----------------------SSS-----------------------------------
-----------------------------------------S---S-S--------------------------------
-----------------------------------S---S--------------------S--------S----------
---------------------------------------S----------S----S--SSSSS---------S------S
------------S-----S--
>forward_40
--------------------AGGTGTTGGAGCGATGTCTG----------------------------------------
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>reverse_2104
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-----------------------GAAGAGTCCCGGTTACGCTC-------------------------------------
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