>input_sequence_82733
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-ATGGCTGCCACATTGAAGCTCACAGTCGCCTTCCTCCTCCTCGTCTCCGGTACG--TCCCCAGCCGTGTCCA-------
-TATGCTTCA-ACCATGCACGTACACCTGTGTGATGCGCTCTCTCTGACGCTCTATGC-TTGCTCTGCTTGTTC-TTGTC
GTGGATCGAGCAGCGCTGGTGGCGTTCGGCGACGCCAAGAAGGCGCCGTGCGCCGTGGTGTGCGTGCAGGGAGGGCACAT
CACCTGCGACAACTACCCCGGGCAGAAGCTCGACGGGTGCGACTGCCAGTGCGCGCCCAAGGACGGCAAGGGCTGCGTGC
TCCACCTCAACAGCGGCTCCACCAACCAGTGCACCACCCCGCCGGAGTACTGA---------------------------
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>chr4A_1_TraesCS4A01G250200
AAGTTTGAGAGCTCGACTTCCTCCAGGGTGGAAACCTAAGATCTTGGATCGGACGACGACGGCGCTTGTGCATTGTTTCC
TTATTATAGGCGTCGCTTTTGAAGACCTTTTATATTTTTTTGGTGTTTTCTTTGGTGGTGGTTTCTGTGTTGTTTCTGAG
AGGAGTTGATCACTGTGATGAGGCCTTTGTTTTTTCTTTTCTTTTGGCCTTTGTACATTATGGATGTCTTTAAGACATCT
TGTTAGTGCAAAAGCTAGTGTAATTAATATCTTCGACGAATCTCTTCTCCATACTTGATACTTCAACTCCAAGCAGCTAA
TCTGCTATGCCTTATGGTTGAATGCGAGATAAGTTTTCCAAGCTAAAAAAGTAAGAAGGTCAACAAAATCCAGGCCACGA
AAGTCGTTGCTAACTTGAGAGCTCATCTTGCACAGTGTGTGAACCCACGACCCGACTTTTGAGCGGTCAACCCGAACCGC
ATCGAAGAAGCAGTGGAAACTTGCAAAAGATAGGATAGTACGCCGATCCATCCAGCACGGCAGT--------CCTCACAT
ACTCAGATCCGCGCGCCACGTGATGCTGCCTCAAGTCAGAGGAGGCGCGCGACCAAGTCAGCAACCTCCTCTGACTTTTC
GCCCTCGATCGGCCAT---GGACAAAGCATGCTGAGATCAACCCGAAGCCTGACCATAGTTCTGAACTTCTGAAATCCAC
GAAGCTGGCGTCGACGCAAGCACGTACGCACCGGAGTAC----ATCAGTGCCGCGCGCCACGTGATGTTGCTTCTAGTCT
CCAGTGAACCCACGTACGCGGCAGAGAGTCAGAGACCCCAGCATGCAGTTCGGCTGAGCCGAAGCCGGACGTACTCCCCG
ATCTAGATATATTCATTTATACAACGAGTAATTTGAAACGGAGGGAGTACCTCCATAGCTCCCCTATATAAACGCACCGG
CGCCGAGCTACAAAGTGCAAACACAAATCGCACGGCGCAAACGCAACACAC--A------------------------AT
CATGGCTGCCACATTGAAGCTCACAGTCGCCTTCCTCCTCCTCGTCTCCGGTACG--TCCCCAGCCGTGTCCA-------
-TATGCTTCA-ACCATGCACGTACACCTGTGTGATGCGCTCTCTCTGACGCTCTATGC-TTGCTCTGCTTGTTC-TTGTC
GTGGATCGAGCAGCGCTGGTGGCGTTCGGCGACGCCAAGAAGGCGCCGTGCGCCGTGGTGTGCGTGCAGGGAGGGCACAT
CACCTGCGACAACTACCCCGGGCAGAAGCTCGACGGGTGCGACTGCCAGTGCGCGCCCAAGGACGGCAAGGGCTGCGTGC
TCCACCTCAACAGCGGCTCCACCAACCAGTGCACCACCCCGCCGGAGTACTGAGATGAATTACACGCGGTTCGGCATG--
-CTGGCTCGAGTCCGAGCTCTATGAAGATGCAAGTGTGTGT--GTCGTGGAGCAACTATAGATACACTTCCTATCAAAAT
GTAAGACCATTTTTGACATTATGATAGTGTCAAAAAAGCATCTTACATTTTAGTAATACAAAGGGAGTATCATGTAAGTT
TGTGTC-GTGGAATAAATAACGAAAGGAATGCAGTCTGTCGATCAAGTTTCATATCAGGGCCAGGCACAGC-AAAGGAAA
CCGGCAAAACACCAAATT------------------------ACCGAGCGCACATGATCAAAACAATACTAGTAAAAGGG
TTTTTAACGATGGAGTATGTGGTTTTTTTCTTTTCAAAACACAATACAGACGCAAGCGCTTATACATACGTGTATACACT
CACCCCTATAACGCACACACACACGCACATGCATTGCCGAAAATTCTGAAATAAATCCAGAAATAATGTAAGCAGCAGGA
CTTGAACCCTGATGGGCTGGGGATAACA------TTGTCATTCTAACCATCCAACCATAGGTTAGTTCA-TGAATATGTG
GTTGTTCAGAGTTAAAATGTGATTGTTGAAAGTCTTTGGTAAGGTTATGGGCCCCGTTATGTGATCGTTGAAGTCTTAAA
AATGATAGATTTAGTTTAGCTATTCGCAAAAAAAAAG-------------------------------------------
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-----------------------------------GATTCAGTTTAGCGAGCGTGAACAGAGAATTGACCAGATCCGTTG
CCCTACTCACTTTCCACTCTTCCTTGGTTAACTTTGGACGAGAAAGCAGTAAGCGCTGTGTTCTTGAGCAGCACTAAGCG
CTGCTTTCCGTTAACGAAGAACGTAGTAGTGATTGGCACTTGGAGAAAAGAATAC-----AATGGACATGTGTTTCAAAC
TTTCAATGGTCCACTGACTCTGGATCCAAGTAGCGACCATTGATAAACAACACTAGAAGTAAAGAAATGAAACAATGATG
GTTGTTTGACTGGGTTATCTTTGATCCAAAGCCCGATATTGGATGCAAGATAAG
>chr4D_337
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----------------GTTGAATGCCAGAAAACTTTTCCAAGCTC--AAAGTAAGAAGGTCAACAAAATCCAGGCCACGA
AAACTGTTGCCAACTTCAGAGCTCATCTCCAACGCTGTGTGAACCCACGACGCGACTTTTGAGCGGTCAACCCGATCCGC
ATCGACGAAGCAGTGGCAACTTGCAAAAGATTGG-----ACGCCGATCCATCCAGCACGGCAACCCTCACGGCCTCACAT
ACTCAGATCCGCGCGCCACGTGATGCTGCTTGAAGTCAGAGGAGGCGCGCCACCAAGTCAGCAACGTCCTCTGACTTTTC
GCCCTC------------------------GCTGAGATCAACGCGAAGCCTGGCCATTGTTCTGAA--------ATCCAC
GAAGCAGGCGTCGACGCAAGCACGTACGCACCGGAGTAC----ATCAGTACCGCGCGCCACGTGATGTCGCTTCTAGTCT
CCAGTGAACCCACGTACGCGGCACAGGGTCAGAGATCCCGGCATGCAGTTTGGCTGAACCCAAGCCGGACGTACACCCAC
ATCCCCGG-----------------------------------------------------CCCTATATAAACGCAACGG
CGCCGAGCTC-------CAAACACAGATCGCACCGCGCAAACGCAGCACACGTA------------------------AG
CATGGCTGCCACCATGAAGCTCACAATCACCTTCCTCCTCCTCGTCTCCGGTACG--TCCCCAGTCGTGTGCTTAACTCC
TTATGCTTCAGACCATGTACGCACACCTGTGTGACACGCTTTCTCTGACGCTCTATGCTTTGCTTTGCTTGTTCTTTGTC
GTGGATCGAGCAGCGCTCGTGGTGTTCGGCGACGCCAAGAAGGCGCCGTGCGCCGTGGTGTGCGTCCAGGGAGGGCACAT
CACCTGCGACAACTACCCCGGCCAGAAGCTCGACGGGTGCGACTGCCAGTGCGCGCCCAAGGACGGCAAGGGCTGCGTGC
TCCACCTCAACAGCGGCTCCACCAACCAGTGCACCACCACGCCGGAGTACTGAGATGAACTACATGCGGTTCGGCATGAT
GCTGGCTCGAGTCCGACCTCAATGAAGCTGCAAGTGTGTGTGTGTCGTGGAGTTAGTAAATACCCCCTCCGTATCAAAAT
ATAAGA--------------------------------CATCTTACGTTT---TAATACAAAGGGAGTATGATGTAAGTT
TGTGTC-GTGGAATAAATAACGAAAGGAATGCAGTCTGTTGATCAAGTTTCATAGCAGGGCCAGGCACATAAAAAGGAAA
CCGAAAAAACACCGAAGTAGCTAGGAGTATCTGAAACAACTGACCGAGCGCACATGATCAAAACAATGCTAGTAAAAAGG
TTTTTAACGATGGGATATGTGGTCGTTCAAAGTTGTTATTTTTGTAGCGGCGGGACAGTGTGTCGATGTTAATTTTGTGA
GGAAATAACGACCATAGTTTTGGTATTGGCGGCCACTTTTATCACCTCTAAAATTACTTCCATGGTTACTAAAATGTGGA
ATGCTTACACCCCCTTTAAAGTTGAACGGAGCTCTAGTAATCCCTTCTTTGCAACCATCGCTTGGTTAACCGCCTTTGTA
AAAGTAGCATCTGCACGATGTGATCCCTTGG-------------------------------------------------
-ATTGTATATATAGCCTTGTTCATCATCAATAAAAACAACACCTCATTCTCAATCTCATT-TTACCTCAACATTGCCAAT
TGTTTGGCAGTGTGATTCCGTGGGAGTCCATGTAGATAATCCAACTTTGCACGGTTCGAATAAATTCTCCGAGCAAAATG
TGCTGAGACACATAAAAGGTTTTAGGCGCATGATAGATTCAGTTCAGCGAATGTGAAC--AGAATTGACCAGATGCGTTG
CCCTACTCACTTTCCACTCTTCCTTGGTTAACTTTGGACGCGAAAGCAGTAAGGGCGTGTT-------------------
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>chr4B_498
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-----------------AACTTGCAAAAGATTGG-----ACGCGGATCCATCCAGCACGGCACC--------CCTCACAT
ACTCAGATCCGCGCGCCACGTGATGCTGCTTCAAGTCAGAGGAGGCGCGCGACCAAGTCAGCAACCTATTCTGACTCTTC
GCCCTGGATCGAATCGGCCGGACAAAGCGTGCTGAGATCAACGCGAAGCCTGGCCATAGTTATGAA--------ATCCAC
GACGCCGGCGTCGACGCAAGCACGTACGCACCGGAGTACGTACATCAGTACCTTGCGC----------------------
-----------------------------------------CATGCAGTTTGGCTGAACCGAAAGCCCTACGTACAC---
----------------------------------------------------CCACAGCTCCCCTATATAAACGCACCGG
CGCCGCGCTGCAAAGTGCAAACACAGATCGCACGGCCCCAAAGCAACACACGAAATTAAGCAAGCGCACACACACGCCAG
CATGGCTGCCACCATGAAGCTGACAATCACCTTCCTCCTCCTCGTCTCCGGTATGTCTCCCCAACCGTGTCCTTGACTCC
TTATGCTTCAGACCATGTACGCACACCTGTGTGACACGCTTTCTCTGACCGCTTCACTC-----TTGCTTGTTCATTGTC
GTGGATCGAGCAGGGCTGGTGGTGTTCGGCGACGCCAAGAAGGCGCCGTGCGCCGTGGTGTGCGTCCAGGGAGGGCACAT
CACCTGCGACAACTACCCCGGGCAGAAGCTCGACGGGTGCGACTGCCAGTGCGCGCCCAAGGACGGCAAGGGCTGCGTGC
TCCACCTCAACAGCGGCTCCACCAACCAGTGCACCACCACGCCGGAGTACTGAGATGAATTACATGCGTTCGTCAT---T
GCTGGCTTGAGACCGT--TCAATGAAGCTGCAAGTGTGT------CGTGGAATAAGTAA---------------------
-----------------------------------------------------------------AGTATAATGTAAGCT
TGTGTCAGTGGAATAAATAACGAAAGGAACGCAGTCTGTGGATCAAGTTTCATAGCAGGGCCAGGCACATAAAA-GGAAA
CCGAAAAAACACCGAATTAGCTAGGAGTATCGGAAACAGCCGAGTGAGCGCACATGATCAAAACAATAGCTCAAAATG--
----------------------------------GTTATTTTTGTAGCGGCGGGACAGTGTGTCGATGTGAATTTTGTGA
GGAAATAACGACCATAATTTTGGTATTGACGGCCGCTTTTATCACCTCTGAATTTACTTCCATGGTTACTAAAATGAGGA
ATGATTACACCCCCTTAAAAGTTGAACGGAGCTCTAGTAATCCCTGTTTTCGAACCATCGCTTGGTTAA-CGCCTTTGAA
AAAGTAGCATCTACACGATGTGATCCCTTGG-------------------------------------------------
-ATTGTATATATAGCCTTGCTCATCGTCAATAAAAACAGTAGCTCATTCTCAATCTCATTTTTACTTCAACATTGCCAAT
TGTTTGGCATTGTGATTCCGT--------------------------TGCACGGTTCGAATAAATTCTATGAGCATAATG
TGCTGAGACACATCAAAGATTTTAGGCGCATGATAGATTCAGTTCAGCGAGCGTGCACAGAGAATTGACCAGATGTGTTG
CCCTACTCACTTTTCACTCTTCCTT-GTTAACTTTGGACGAGAAAGCAAGAAGAGTTGTGTTCTTGAGAAGCACTAAGCG
CTGCTTTCCATTAACGAA----GTAGTAGTGATTGGCACTTCGATAAAAGAATGCAATATAATGGCCATGTGTTTCAAAC
TTTCAATGATCCACTAACTCTGGATCCAAGCTGCGACCACTGATAAACAACACTGGAAGTAAAGAAATGAAACAATGATG
GTTGTTTGAGTGGACTATCTTTGATCGAGAGCCCGATGTTGGATGCAAGATAAG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS---------S---S--S-----------SSS---------------------------------
--SSS-----S-----S-----------SSS--SS----------------S-----------------------S----
-----S----------S--------------S--SSSSS-----------------------SS----------------
-----------------------------S--------------------------------------------------
-----------SSSSS------------S-------------S---------S-------------SSSSSSSS------
-----S-------------------------------------------S------------------S-----------
-----------------------S--S--------S---S----------S------S----------------S---SS
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------------------
---------S---------------S-----------------------------------------------------S
------------SS-----------S--S-------------------------------------------S-------
-----------------S---S------------SS----S-----------------------S---------------
----------------------S------------------------------------------S--------------
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--------------------------------------S-------------------------S---------------
----------------S---S------S------------------------S--S--S-S-SS-S--S-S---------
S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---SSS-----------------S---------
---------------------------------------S--------------S--------------SS---------
---SS--------S------------------------------------------------------------------
-------------SS--------SS--SSSSS--SSS-SSSSSS--SS-S--SS-SS-SS-S-SS--SS-SS-S-SSSSS
SSSSSSS-SS--SSSS-SSSSSSSSSSS-S-SSSSSSSSS-SSSS--SS--S-SSS-SSSS-SSSS-SSS-SS-SS----
S-SSSSS-SSSSSSSSSSSS-SSS---S-------S--S--S-SSS-SS---------S-S--S---S--S-SS-S---S
SSS--SSSSSS-SS-SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S--SS--S--S---SS-S---SS---SS--S-----S-------------------------------------------
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--------------------------------------------S-----------------------------S-----
-----------------------------------------------------S--------------S-----------
---------S--------SSSS-------------------S--S--------S-----------S--------------
--------S------S--------------SS-------S--------------S-------------------------
---------S---SS-----------S-S--------S----------------
>forward_25
-----TGAGAGCTCGACTTCCTCCA-------------------------------------------------------
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>reverse_1054
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-------------TTGAAGCTCACAGTCGCCTT-----------------------------------------------
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>forward_885
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-----------------------------------------------------------------CGGACGTACTCCCCG
ATCTA---------------------------------------------------------------------------
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>reverse_2047
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----------------------------------------------ATGGGCCCCGTTATGTGATC--------------
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