>input_sequence_82727
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-----------------------------------------------ATGGCTACCTCCAGACTCCACATCGCCTGCGCT
CTCCTCCTCGCTGGTAGGCAAACCGCAAACACATCCAACTCTTGCTTTAATGGCAGGTTTTC-AAAGCTTTGAAACGAAC
TTGTTATG-GTATTTTTTTAATATGTGTGCATGTGGTCTGTGTATTCATATATTCAGGTGTTGTGCTTCTGGGGCAAAAT
CAAGAGGGCATGGAAGCCGTGGCTTGCCCTCAGTACTGCCTGGAGGTCGACTACATAACCTGCCCGTCCTCCGGCTCACA
GAAGCTCCCGGCGAGGTGCAACTGCTGCATGGCTCCCAAAGGCTGCACGCTTCATCTCTCCGACGGGATCAACCAAACTT
GCTCTTAA------------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G431300
GGGGGAAACCCTTGGCAGCAGCGTCGTCATCGTCGCGGTCCTTCTTGGAGGTGTTGGTTGGTACCGGTGCTTCGGAGCCT
TGGAGCTTGGTGGGAGAGCTTTGGTGGGCACAGTGGTCGTGAAGCTTCTTCGTTTCCGTCGATCCGCCGTTGTCGGCATT
TTTTTCTTGTTTTTTCTCTTTCGTTTCTTTTGGATGTGATTGTGCTGCTTCCGCCCCAGCACCTATTGTTCATTGTACCG
ATTGGTTGCTTTATAATACAAAGCGGGGAAAACCCTTTTTCTTAACATTGGAGGCGAGAGCGATGGCGAGTAGTTTTATT
TAGTTTTTACACAATCTAATTTAATATTTTTCTAAGTTATATAAAATATTTTGAGTCTAATTTGATGTACTTCCTCCGTA
AAGAAATATAAGAGCGTTTAGATAAAGCGTTGTTATATTTCTTTACGGAAGGAGTAGTAGTTTGAATCAAATTTGCAACG
AATTGTGTTGATTTTTTTTAAAGAGTTATGTATTGAAGATCGGTTAGATCCGTCAGTTTTTTAGAGGAGCATGCTCCTCT
AAGAGGATACTCGATCGTATCCCCTCTAAATTTTTGGAGATCAGTTAGAGATGCTCCCAGTCCAGTCCAATTATACAGAC
ACTGGAAAACGGAGACAGAGGATTTGCGACCGTCCAAAAGTCCGTCACCGGTCAAACCAAGCTGCTGCTGTTTCCTTTGA
GAATTAAATGCAGCCATGGTAGATTTACGGTGAGAGTTCCACGAGATCCATATCCATAGTACAAAGTAGACATCACGAAT
CTGGTCAAGGTTCAAGCCTGATTTAGTTGACTACAAGCTACGAAAATTGGGTGGTTTCAGCGTAGCCACCGGCTAGTGTA
CAAGGCAGTACTCTTCAGGACAAAGGCTATATATTAGGATGTCAGTGGAAGCAATCAAGGAAATATCTTACCCTGCGATC
CTTATCAGAATTCAGAACCAGCTCAGGAGTGT-------GTACAGACATGGCTACCTCCAGACTCCACATCGCCTGCGCT
CTCCTCCTCGCTGGTAGGCAAACCGCAAACACATCCAACTCTTGCTTTAATGGCAGGTTTTC-AAAGCTTTGAAACGAAC
TTGTTATG-GTATTTTTTTAATATGTGTGCATGTGGTCTGTGTATTCATATATTCAGGTGTTGTGCTTCTGGGGCAAAAT
CAAGAGGGCATGGAAGCCGTGGCTTGCCCTCAGTACTGCCTGGAGGTCGACTACATAACCTGCCCGTCCTCCGGCTCACA
GAAGCTCCCGGCGAGGTGCAACTGCTGCATGGCTCCCAAAGGCTGCACGCTTCATCTCTCCGACGGGATCAACCAAACTT
GCTCTTAACCCAGTTCAGAGTTCAGACAGTGATGTAACTTCATGTCTTCATGTATGGTGTGGCGGTAGACAGTGTACTTG
TCATTTGTCAAGGCAGTAATAATCTGACAAAGCTGCAAGTTTTGCGGATAAAGCATGTCATATACTATGATACACG--TT
ATCGATGAGTACGCACATATAA---------------GCAGCTTCAAAGAGCCCTAAAAGTTGTTTTGGTACCTATGGTT
ATCTTGCTGAGATAACC---AGAGGGTACCAACGGTAAGGAGCAGAGAGGTTAGGAACGTAATAATAACGATTA-CCTAC
AATTAGGATGTTAATTATAAATAGACATAACAGCTGCTGTGGTGTAGTGGTTATCACGTCAGTCTTACACACTGAAGGTC
TCCAGTTCGATCCTGGGCAGCAGCATTTTTATTTCTTTTTCCTCTTTTTTGGCCCCAGTCATCTGGCAT--TTT------
-----ATGATAATATAGCAGGACAAAATGTTAACAGTTCTTTTCTCTCCCTACAGCA-----------------------
-----------------------------AAAAACCATCATGTTCTTCATGAAGAAAATAAAGCCCCATGGCAACACCAC
ACAGCCACCGTTATTCTCATGGCAACTACAGCAAAAACCATCATGTTCCTCAGGAGAGCATGACAAAGATCCGAAGATGT
GTTCTCGCAAAATAACTAAATCAGAATACACAAGCCTTAGGCGTCCCCGGCCCCACTAGCTTCAGTGTGATCCGATCC--
--TCTGTCTCTTCGGCGCCATCTTGACCGTGGAATCTCAGGCATTCTCCTTTCCGTCCATTGCGCTGGTACCTGCTTGAT
CAGTACTGAGGGTCTGGGGTTCAATCCTGGGCGGCAGCATTATTTTCTTTTACCATGTTTCATTTTTTGCTTGGCATTAC
AATCAGATGGCCATTGTTCTGCATGTCAATGATACATAGGAGGGGCAGATGATCAGATATTTTTTCTCTTTGTTAACATA
CTGATTTTAGTGTGAACCATGTTACTCAGATAGTGGGAATTACAAACTGCAGATACAC
>chr1D_717
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----------------------------------------------------------------------------TTGA
GAATTAAATGCACTCATGGTAGATTTACGGTGAGAGTTCCACTAG------ATCCATAGTACAAAGTAGACATCACGAAT
CTGGTCAAGGTTCAAGCCTGCTTTAGTTGACTCCAAGCTACGAAAAATGGTGGTTTTCAGCGTAGCCACCCACTACTGTA
CAAGGCAGTACTCTTCAGGACATAGGCTACATATAAGGATGTCAGTGGAAGCAAACAC--------CTTACCCAGCGTTT
CAGATCAGAGTTCAGAACCACCTCAAGAGCGTGTGCAGAGTACAGACATGGCCACCTCCAGACTCCACATCGCTTGCGCT
CTCCTCCTCGCTGGTAGGCAAAG------CAGATCCAACTCTTGTTTTAATGGCAGTTTTTCAAAAGCTTTGAAACGAAT
TTGTTATTAGTATTTATTTCACTG------------------------TGTATTCAGGTGTTGTGCTTCTGGGGCAAAAT
CAAGAGGGCATGGAAGCCGTGGCTTGCCCGCAGTACTGCCTGGAAGTCGACTACATAACCTGCCCGTCCTCCGGGTCACA
GAAGCTCCCGGCGAGGTGCAACTGCTGCATGGCTCCCAAAGGCTGCACGCTTCATCTCTCTGACGGGATCAACCAAACTT
GCTCTTAATCC-------AGTTCAGACAGTGTTGTAACTTCATGTCTTCATGTATGGTCTGGAGCTAGACAATGTACGTA
C---TTGTCATGGCAGTAATAATGTGACAAAGTTGTATGTTTTGCGGATAAAGCATGTCATATACTATGATTTATGCATT
ATCGACGAGTACGCGCATATACAGATATTCCCTCCCGGCAGCTTCAATGAGCCCTAAAAGTTGTTTTGGTACCTATGGAG
CAGAGGAGGGTAATAATAACGT---------ACGGTAAGGAGCAGAGAGCTTAGGAACGTAATGATAATGATTACCGTAC
AATTAAAGCGTCGATTATAAATCGGCACGACAGCTGCTGTGCTGTAGTGGTTATCACGTCAGTCTTACACACTGAAGGTC
TCCAGTTCGATCCTGGGCAGCAGCATTTTCTTTCTCCT----ATTTTTTTGGCCCCAATCATCTGGCAT--TTTTCTGCA
TCTCAATGATAATATAGCTTAGGAGCAGT-------TTTTTTTCTCTCCATCTACGACCTAACTGTACAGTATATAATTT
GTGTCTTTTCATCTATTACAACCTACAGCAAAAATCATCATGTTCTTCATGAAGAAAATAAAGCCCCACGGCAACACCAC
ACAGCCACTGCTATTCTCATGGCAACTACAGCAAAAACCATCATGTTCCTCAGGAGAGGATGACAAAGATCCGAAGATGT
GTTTTCTCAAAATACA--------------CGAGCCTTAGGCGTCCCCGGCCCCACTAGCTTCAGTGTGATCCGGTCCTC
TGTCTGTCTCTTCGGCGCCATCTTGACCGTGGAATCTCAGGCATTCTCCTTTCCGTCCATTACGCTGGTACCTTCTTGAT
CAGTACTGAGGGTCTGGGGTTCAATCCTGGACGGCAGCATTATTGTCTTTTACCATGTTTCATTTTTTGCTTGGCATTAC
AATCAGATGGCCATTGTTCTGCATGTCAATGATACATAGGAGGGGCAGATGATCAGATATT-GTTCTCTTTGTTAACAAA
CTGATTTTAGTGTGAATCATGTTACTCAGATAGTGGGAATTACAAACTGCAGATACAC
>chr1B_959
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------------------------------------------------------------------------------TC
CTGATCAGAATTCAGAACCACCTCAGGAGTGTGTGCAGAGTACAGACATGGCCACCTTCAGACTCCACATCTCCTGCGCT
CTCCTCCTCGCTGGTAGGCAAAC-------ACATCCAACTCTTGTTTTAATGGCAGTTTTTCAAA-GCTTTGAAACGAAT
TTGCTTTTTGCAATAGTATTCTTAT-----ATGTGGTCTGTGTATTCATGTATTCAGGTGTTGTGCTTCTGGGGACAAAT
CAAGGGGGCATGGAAGCCATGGCTTGCCCTCAGTACTGCCTGGAGGTCGACTACATAACCTGCCCGTCCTCCGGCTCACA
GAAGCTCCCGGCGAGGTGCAACTGCTGCATGGCTCCCAAAGGCTGCACGCTCCATCTCCCCGATGGGATCAACCAAACTT
GCTCTTAACCCAGTTCAGAGTTCAGACAGTGATGTAACTC--------CACGTATGGTGTGGTGCAAGACCATATG----
C---TTGTCAAGGCAGTAATAATGTGAACAAGCTCTAAGTTTTGCGGATAAAGCATGTCATGTAACATTATATGATGTTT
CCTTCC-------------------------------GCAGATTTAAAGAGCCCCAAAAGTTGTTTTGGTACCTAAGGTT
ATCTTGATGAGATAAGCAAAAGATGGTACCAACGGTAAGGACAA----------------------------TAAAGAAC
AATTTATGTGTCAATTATTAATGGACAGAAGAGCTGCTGTGGTGTAGTGGTTATCACGTCAGTCTTACACACTGAAGGTC
TCCAGTTCGATCCTGGGCAGCAGCAAATCCTT-----T----TTTTTTTTGACCCTGGTCCTCTGGATTTATTTTTTGCA
TGTCAATGATAATATAGCAGGACAAAATGATAACAGTTTTTTTATCTCCATTAACGAACTAACTTTACAGTAAATAATTT
GTGTCTTTTCATCTGTTACAACCTACAGCAAAAACCATCACGTTCTTCATGAAGAAAATAAAGCCCCACGGCA-------
-------------------------CTACGGCAAAAACCATCATGTTCCTCAGGGGAGCATGACAAAGATCCGAAGATGT
GTTTTCGCAAAATAAATAAATCAGAACATGCGAGCCTTAGGCTTCCCCGGTCCCAGTAGGTTCAATGTGT-----TCC--
--TCCGTCTCTTCCGCGCCATTTTGACCGGGGAATCTCAGGCATTCTCCTCTCCGTCCATTGCGCCGGTACCTGCTTGAT
CAGTACTGAGGGTCTGGGGTTCAATCCTGGGCAGCAGTATTATTTTCTTTTACCATGTTTTCCTTTTTACTTGGCACTAC
AATAAGATGGCCATTGTTCTGCATGTCAATGCTACATAGGAGGGGCAGATGATTAAACATT-TTTCTCTTTGTTAACAGA
CTGATTTTACTGTGAACCATGTCACACGGACACTGGGAATTACAAATTGCAGATACA-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
------------SS----------------------------S--SSSSSS-----------------------------
--------------------S-----------S-------------S---SS-S----------------SS---S----
----------------------S------S----S-------------------S--SSSSSSSSS-------S---S--
--S-----------------S-------------------------------S---------------------------
-----------------------SSSSSS---------------S-----------S----------------------S
-------S-------S---S--SSSSSSSS-------------------S------------------------------
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--------------------------------------------------------------S-S------S-----S-S
SSSS-------------------S-----------S------------------------------------S-S-----
-----S--------S------S----------------------------------------------------------
------S--------S-------S-------------------------S-------------S----S-------S---
-----SSS---S----------S----S----------------------------------------------------
-----------------------------SS--SSSS-SSSS-S------------------------------------
-----------------------------S--------S----------S-SS-SS------------------------
--------------------------------------------------------------------S-----------
--------S-S---------------------------------------------------------------------
---S-----------S----------S-SS-S------------------------------------------S-----
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>forward_98
------------------------------------------------------------------------------CT
TGGAGCTTGGTGGGAGAG--------------------------------------------------------------
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>reverse_1144
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-----------------------TGTGTGCATGTGGTCTGTGT-------------------------------------
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>forward_102
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--GAGCTTGGTGGGAGAGCTTT----------------------------------------------------------
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>reverse_1624
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-----------------------GGGTACCAACGGTAAGGAGC-------------------------------------
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