>input_sequence_82712
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-------------------------------------------ATGGATGCACTACATGTTGAAGCTTTGGCACTACTGC
ATGCCATCAACACAGCAAGTCAAATGGGATGCCAC---------------------------------------------
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-----------------------AAAGTATTGTTTGAAACTGATTCTGCACAACTGAAGACTGTGGTGACAACTGAAGAA
TATGATTTGGCGGTTCTAGGAGCTATATTTAGAGATATAAAATTTCAGTTGTGTGTAGGTTTCACTAAGGTACGTGTCAT
TTCGTGTCCTCGGACTTGTAATTCTGTAGTGCATTGTTTAGCTGCGCACGGTGCTAATATGGAAGCTGGAACCTATGAGA
CTTGGCTGGGACAGTTACCAAACTTTGTATTGAATGTTGTTGCTGGCGATTTGCCCAGTGGCACCTTATAA---------
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-------------------------------
>chr6D_1_TraesCS6D01G249900
CGGCAGCGCTCTATTTGCGTTAGGCCACCTTGCACAAACGTTTCCACACAAAGAACTGTGTGTGATATACATACCTACGG
AAATGTTTTTCTAGGATTCACCGTGTGGGATGTACATACCTACAGAAATGATTTTCTGCGATTCACCGTGTGGTATGTAC
ATACCTACGGAAATGATTTTCTGGGATTCACCGTGTGGGATGTACATACCTACGGAAATGATTGGGTTTCGATGACTCAC
CCGATCGCAAACGGCCCCAGCCTGTGTCCTAGGAGGGCCTATCCCCGACGATTTCTGGGTCATGTGGGAAGGACCCCCCT
ATCGCCCACACTCACTTGGCGACGGTTCCAAATGTCGTCGCGGAAGGGGTTAAAAACCGTTTGTATAGCACGTCGCTGTA
CCAGTGGCTACCCTCCCGAACAAAGTACTCCATTTCCTGTGGCGCCTGTCTACTCACATCTTACCACTTCGAATGAAACT
CTAGTGCAGAGGTATGAAAGTGGATACTCTTTGCCCTCTGTGTTTTAGGTTGGACGAAGATGCTGGGCACTGTTTTCCTA
AATGCAAGAAAGTAAAGGAGGTGTGGAGGAAAGCTCTGCTGGAACATGTTAGACTACAACTAATTAGTTGCAATGATGCC
ACAAGATTTATGGATACAA-TCTTTAGTTTAAATGAGGAAGATAAAATTAATACATGCATCCTTCTTTGGCGTTGGTGGC
ACCAGAGAAATAATGCAAACATGGGAGATACTATTGAAACTTCTGATGAGATATGCTCCTCAATTAATTACCATGTCATG
AATTTTTTGAAGGAGAAGAAAATAGAAGGAAAACAGAAGCAACAAATTACACAGAAATGGTC--CCGGCCTCCACCCGAA
ACCTTGCAAGTTAACACAGATGGTGTGTTTCAAAAGGACTCAAATACTGCGGGATGGGGCTTTGTAATCAGAGATGAACG
TGGAGAAGTTAAGGCTGCTGGAGCAGGCAGTCTGGAGAGGGTCATGGATGCACTACATGTTGAAGCTTTGGCACTACTGC
ATGCCATCAACACAGCAAGTCAAATGGGATGCCAC---------------------------------------------
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-----------------------AAAGTATTGTTTGAAACTGATTCTGCACAACTGAAGACTGTGGTGACAACTGAAGAA
TATGATTTGGCGGTTCTAGGAGCTATATTTAGAGATATAAAATTTCAGTTGTGTGTAGGTTTCACTAAGGTACGTGTCAT
TTCGTGTCCTCGGACTTGTAATTCTGTAGTGCATTGTTTAGCTGCGCACGGTGCTAATATGGAAGCTGGAACCTATGAGA
CTTGGCTGGGACAGTTACCAAACTTTGTATTGAATGTTGTTGCTGGCGATTTGCCCAGTGGCACCTTATAATGGAATACG
ACGTGTCAAGAAAAAAAGAAACCATGGTATGGCCAATGGCTCTCACACAATACATCACGGCATCTTCGGCATTGCCACCG
CGCACCACCTCCGCGATGCCACACCGCAACGCAGGATCGACGCTATCTGCCTCATCCACCCAAAATTAGGGCTCCGGAGA
GACAAAGAAGCGGCGACTACAGCACAAACCTCACATCAACCGTGGTTCCCTCAGGACAAGACCATTTCCAAAGTGATGCC
CCCAAGAGAGTGCACGCCACAAGTGGCATCATTGCCCAACTGAGGAGTCTCATATATGAGGTTTTCCCCAGAAGCTTTGA
TCTGGGGGAAGAGAACAACACCTTTGCAAAGCCTTTGAGAAGGTTACAACGGCCGGAGGCGTTGACCCAGTCATCTCGCA
CCACCCACTGGGTCCAGCTGGCCCACCTTGTCTTTCGCCACCGTGCCACCATGCACGTGCAGCCGCTACCACATGGGGAG
CAACACGGAAAGAGCTCATATCGGCCTGCACACCGGTAGGAAACCATAGACTACCACACACCAGCCGCACCAACGCATCA
TGGTCGATGCCCCGAATCAGTCGTCGGCTGGACCAATGAGTAACCATCATGCCACGCGAGAAAGTGAAGCGCCCCACCGC
CACCTTCCCCAGAGCTGGCGTGAGCTTCGTTGGCCGCTCCTCTAGTAGCGGCGACGACGGCTGGGGTTCTTGCAAGAGGC
TCCTCCTGGAGACGACGCGGGCATCTGGTCCAATTTTTTAGGGTGCTCAGCTCTTGTTCTTGGAATATACCTAGCTAATT
TACAATCCCATCCCAAATACCCTAATTTCTCTTGAAAGAGGATTTTGTCTCGCTTTATAGATAAAATGACACCGCCAAAC
GATACAAGGTGTTGAGGAAATCCTCATACGGGTTGATCGAAGGAAAACTAGACTACATACAACCAACAAGACCAACATGG
TACATAGGTGCGCTACTAGATGCCACCCACA
>chr7B_407
GCTACC--------------------------------------------------------------------------
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-----------CCTCCCGAACAAAGTACTCCATTTCTTGTGGCGCCTGTCTACTCACAGCTTACCATTGCGAACGAAACT
TCACTACAGAGGTATGAAAGTGGATACTCTTTGCCCTCTGTGTTTTAGGTTGGACGAAGATGTTGGGAATTGTTTTCTTA
AATGCAAGAAAGTAAAGGAGGTGTGGAGGAAAGCTCTGCTGGAACATGTTAGACTACAACTAATTAATTGAAATGATGCC
ATAAGCTTTATGGATACAA-TTATTAGCTTAAATGAGGAAGATAAAATTAAAACATGCATCCTTCTTTGGCTTTGGTGGC
ACCAGAGAAATAAGGCAAACATGGGAGATACTATTGAAACTTCTGATGAGCTATCTTCCTTAATTAATTACCATGTCATG
ATTGTTTTGAAGGAGAAGAAAACAGAAGGAAAACAGAAGCAACAAACTACACATAAATGGTC--CTGACCTCCACCCGGA
ACCTTGAAAGTTAACACATATGGTGCG-TTCAAAATGACTCAAATACTGGGGGATGGGGCTTTGTAACTAGAGATGAACA
TGGAGAAGTTAAGGCTGCTGGAGCAAGCAATCCGGAGAGGGTCATGGATGCACTACATGCTGAAGCTTTGGCACTGATGC
ATGCCATCAACATAGCAAGTCAAATGGGATTCCAC---------------------------------------------
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-----------------------AAAGTGCTGTTTGAAACTGATTCCGCACAACTGAAGACTGCGGTAACAACTGAAGAA
TATGATTTGGCGGTTCTAAGATCTATATTTAGAGATATAAAATTTCAGTTGTGTGTAGGTTTCGCTGATGTATGTGTCAT
TTCGTGTCCTCGGACTTGTAATTCTGTAGCGCATTTCTTAGCTACGCATGGTGCTAATCTGGAAGCTGGAACCTATGAGA
CTTGGCTGGGACAGGTACCAGACTTAATACTGAATGTTATTGCTGGCAATTTGCCCAACGGCACTTTATAATGGAATACA
ATGTGT--------------------------------------------------------------------------
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-------------------------------
>chr6D_411
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----------CCCTCCCGAACAAAGTGCTCCATTTCTTGTGGCGCTTGTCTACTCATAGCCTACCGCTACGAACGAAACT
TCATAATAGAGGTATGAAAGTAGATACTCGATGCCCTCTCTGTTTTAGGCTGGATGAGGATGGTGGGCACTGTTTTATTA
AATGCAAGAATGTAAAGGAGGTGTGGAGGAAAGCGTTGTTGGAACATGTTAGACTGCAACTAATCAATTGCGATGATGCC
ATGAACTTCATGGATACAATTTTTTAGCTTAAACAAGGAGGATAAAATTAAAACATGTGTTCTTCTTTGGCATTGGTGGC
ATCAGAGAAACAGGGAAAATGTGGGTGATACTATTAAAACTTCTGATGAGATATGCTCCTTAATTAATTATCATGTTATG
CATGTTTTGAAGGAGAAGAAAGCAGAGGGAAAATTGAAGCCACAAACTGCATAGAAATGGTC--C--ACCTCCACCCGGA
ATCTTGAAAGTCAACACCGACGGTTCGTTTAAAAAGGATTCCAGTGATGGGGGGTGGGGCTTTGTAATCAAAGATGAGCA
TGGAGAGGTCAAGGCTGATGGTGCGGGCAAGCTGGAGAGGGTCATGGATGCACTACAAGCTGAAGCTTTGGCAATGTTGC
ATGCCATCAACACAGCAAGTCAAATGGGATGCCACGAATGCGAAGCCTGCGCCCCCTCCCGCTCCCGTCCGCTCCCTCCC
GCTAGGGTTCCGCCGCCGCCACCCTAGCCCCCTCCCGCCGCCGCCGGTCGCCGGCTCGCGCGCCCCGGCCCTCCCCGCCC
CCCTCTTCCCCCTCCCCATCCCGTTCCCGCCCCTGCGCCGCCTCCCCGGGAGGTGGCCGGGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACCCGTGCGTTCGTCT
CCCTCCCAGGGCTGGTGACGGCGGCGGTGATGCTCGGCTGGGCGGCGACCCGGCAGCGGACGCCGGCGGTAGGCGCAGTG
GCGGTGCTGCCCTTGGCAGCAGGGCGGCATGGTGGCGTGCGGTGGCCGGCGGCGCGTCCCTGGCCCAGATCTGGGCCCTC
CCGGCCCCATCTGGGTCCTAGCGGGCCGGTCCCTGGCGTGGCTTCGTCGTCGTTTGTGTGGTGAGGAGGAGGAGCGGCTC
GGCTGGGGGCGGTGATGTCGATGGCGTGCCTGCTGTAGCGCGATGGCGGGAGCTTTCCGGGAATGGAGTTCCCAACCGGG
CCTGTGGGCACACGGGCCTGGTAGGCTCCTGCTAGTGTGTCCGGTCGGCTACCGTCGTTGATGGTGGAGGTTGTGCCCTC
CCGCGTGCCGATGGTGCTGCGGCCCCTAGTCCCGGCTCCTATCCCTTGTTGTGCAGACCTCACCTCATGGTGCCCTGGTG
AGACGGCGTGGAGGCTTCTTGACCATGGTGGCGCAAGATGGTGGTTGGTTTGGTGGCAGGCTCTGGAGCACTCGAGGTGA
AGGTTGGGATCGGGGGAAACCCCTGTCGGCCTGTCCGACACCGACGCGGCGATGCCGGTGGGTGCCGCCGGACCTTCCTG
GAGGGCGTCGGGGGCGACCCTTCCTCTCGCCTCGTCGTGTACCAGGGGGAACCCTTGGCAGCAGCGTCGTCTTCGTCGCG
GTCCTTCTTGGAGGTGCTGATTGGTACCGGTGCTTCGGAGCCTTGGAGCTTGGTGGGAGATCTTCGGTGGGCGCAGTGGT
CGTGAAGCTTCTTCGTTTCCGTCGATCCGCCGTTGTCGGCATTCTTTTCTCTTGTTGTTTCTCTTTCATTTCTTTTGGGT
GTGATTGTGCTGCTTCCGCCCCAGCACCTATCCTTGCATGTATCGGTTGGTTGCTTTGAAATACAAAACGGGGGGAAACA
TTTTTTCTCAAATGGGATGCCACAAGGTATTGTTGGAAACTGACTCTGCACAACTGAAGACTGCTGTGACAACTGAAGAT
TATGATTTGGCGGTTCTAGGAGCTATATTCAGAGATATAAAATTTCAGTTGTGTGTAGATTTCACGGATGTATCTGTTGT
TTATTGCCCTCGGGTCTGTAATTCTGTAGCTCACTGTTTAGCTAAATATGGTGCTAATTTGGGAGCTGGAACCTGTGAGA
CTTGGCTGGGATAGCTACCGGACTTTGTACTAAGTGTTGCTGCTGGCGATTTGCCCAATGGCACCATATAATGGAA----
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>chr7B_411
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----------CCCTCCCGAACAAAGTAGTCCATTTCCTATGGCGCATGTCTACTCACAACTTACCATTGCGAATGAAACC
CCAGTGTAGAGGTATGAAAGTTGATACTCTTTGCCCTCTGTGCTTTAGGTTGGACGAAGATGCTGGGAACTATTTTGCTA
AATGCAAGAAAGTAAAGGAGGTGTGGAGGAAATCTCTACTGGAACATTTTGGACTACA----------------------
---------------ACAA-TTTTTAGTTTAAATGAGGAAGATATAATTAAAACATGCATCCTTCTTTGGCGTTGGTGGC
ACCAGAGAAATAAGGCAAACAAGGGAGATACTATTGAAACTTCTGA--------------------------ATGTTTTG
AATGTTTTGAAGGAGATGAAAATAGAAGGAACACATAAGCAACAAACTACACAGAGATGATC--CCGATCTCCACCCAGA
ACCTTGAAAGATAACACAGATGATATGTTTCAAAAGGACTCAAATACTGGGGGATGGGGCTTTGTAATCAGAGATGAACA
TGGAGAAGTTAAGGCTGCTAGAGCAGGCAATCTGGAGAGGGTCATGGATGCACTACATGCTGAAGCTTTGGCACTACTGC
ATGCCATCAACACAACAAGTCAAATGGGATGCCAC---------------------------------------------
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-----------------------AAAGTGTTGTTTGAAACTGATTCTTCACAACTGAAGACTGTTGTGACAACTGAAGAA
TGTGATTTGCCAGTTCTAGGAGCTATATTTAGAGATATAAATTTTCAGTTGTGTGTAGGTTTCAGTGATGTATGTGTCAT
TTCATGTCCTCGAACTTGTAATTCTGTAGCGCATTGTTTAGCTACGCACAGTGCTAATATGGAAGCTGGAACCTATGAGA
CTTGGCTAGGGCAGTTACCAAACTTTGTACTGAATGTTGTTGCCGGCGATTTGCCCAGCGACACCTTATAATGGAATACG
ACGTGT--------------------------------------------------------------------------
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>chr6A_411
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----------CCCTCCCGAACAAAGTGCTCCATTTCTTGTGGCGCTTGTCTACTCATAGCCTACCGATGCGAACAAAACT
CCATAACAGAGGTATGAAAGTAGATACTCGATGCCCTCTCTGTTTTAGACTGGATGAGGATGGTGCGCACTGTTTTATTA
AATGCAAGAAGGTAAAGGAGGTGTGGAGGAAAGCGTTGTTGGAACATGTTAGACTGCAACTAATAAATTGCGATGATGCC
ATGAACTTCATGGATACAA-TTTTTAGCTTAAATGAAGAGGATAAAATTAAAACATGTATTCTTCTTTGGCGTTGGTGGC
ATCAGAGAAACAGGGCAAATGTGGGTGATACTATTAAAACTTCTGATGAGATATGCTCCTCAATTAATTACCATGTTATG
CATGTTTTGAAGGGGAAGAAAGGAGAGGGAAAAGTGAAGCCACAAACTGCAGAGAAATGGTCTCC--ACCTCCACCCGGA
ATCTTGAAAATCAACACCGACGGTTCGTTCGAAAAGGATTCCAGTGCTGGGGGGTGGGGCTTTGTAATCAGAGATGAGCA
TGGAGAGGTCAAGGCTGCTGGTGCAGGCAAGCTGGAGCGGGTAATGGATGCATTACAAGCTGAAGGTTTGGCAATGTTGC
ATGCCATCAACACAACAAGTCAAATGGGATGCCAG---------------------------------------------
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-----------------------AACGTATTGTTGGAAAATGACTCTGCACAACTGAAGACTGCTGTGACAACTGAAGAT
TATGATTTGGCGGTTCTAGGAGCTATATTCAGAGATATAAAATTTCAGTTGTGTGTAGGTTTCACGGATGTATGTGTTGT
TTATTGCCCTCGGGCCTGTAACTCTGTAGCTCACTGTTTAGCTAAATATGGCGCTAATTTGGGAGCTGGAAC--------
-TTGGCCGGGACAGCTACCAGACTCTGTACTAAGTGTTGTTGCTGGCGATTTGCCCAGTGGTACCATATAATAGAATGCA
CTGTGT--------------------------------------------------------------------------
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>chr3B_411
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----------CCCTCCCAAGCAAAGTGCTCCATTTCTTGTGGCGCTTGTCTACTCATAGCCTACCGCTGCGAACGAAACT
CCATAACAGAGGTATGAAAGTAGATACTCGATGCCCTCTTTGTTTTAGGCTGGATGAGGATGGTGGGCACTGTTTTATTA
AATGCAAGAATGTAAAGGAGGTGTGGAGGAAAGCGTTATTGGACCATGTTAGACTGCAACTAATCAATTGCGATGATGCC
GTGAACTTCATGGATACAA-TTTTTAGCTTAAATGAGGAGGATAAAATTAAAACATGTATCCTTCTTTGGTGTTGGTGGC
ATCAGAGAAACAGGGCAAATGTGGGTGATACTATTAAAACTTCTGATGAGATATGCTCCTCAATTAATTATCATGTTATG
CATGTTTTGAAGGAGAAGAAAGGAGAGGGAAAATTGAAGCCACAAACTGCAGAGAAATGGTCTCC--ACCTCCACCTAGA
ATCTTGAAGGTTAACACCGACGGTTCGTTCAAAAAGGATTCCAGTGATGGGGGATGGGGCTTTGTAATTAGAGATGAGCA
TGGAGAG-----------TGGTGCGGCCAAGCTCGAGAGGGTCATGGATGCACTACAGGCTGAAGCTTTGGCAATGTTGC
ATGCCATCAACACTGCAAGTCAAATGGGATGCCAC---------------------------------------------
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-----------------------AAGGTATTATTGGAAACTGACTCTGCACAACTGAAGACTGCTGTGACAACTGAAGAT
TATGATTTGGCGGTCCTAGGAGCTATATTCACAGATATAAAATTTCAGTTGTATGTAGATTTCACGGATGTATCTGTTGT
CTATTGCCCTCGGGCCTGTAATTTTGTAGCTCACTATTTAGCTAAATATGGAGCTAATTTGGGAGCTGGAACCTG--AGA
CTGGGCTGGGACAACTACCAGACTGTGTACCAAGTGTTGCTGCTGGCGATTTGCCTAGTGGCACCATATAATGGAAT---
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS------------------------------------------------S---------S-----------
-S------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
-S---S---------------S-----------------------------S----------------------------
-------------S------------------------------------------------------------------
---S------------------------------------------S--------------------S----------S-
------S------------------------------------------S-----------------------------S
-----------------------------S-----------------------------S--------------------
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------------------------------------------------------------------S-S---S-------
-----------------------------S-------------S------------------------------------
-----------------------------S--------------------------------------------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_314
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------------------------------------------------------CTGGGTCATGTGGGAAGGAC------
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>reverse_3565
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--------------------------------------------CATCATGCCACGCGAGAAAG----------------
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-------------------------------
