>input_sequence_82700
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-----------------------------ATGGCATCGGTGGGGTTCGGCAGCAGCGTGGCGGCAGTGGCGC--------
----CGGCGTCGTCGGCGGGGAGGAGTAGCCTTCGCCCGCAGCGGACGCGGCTGGCGGTGCCGGCGGCGACGAGGGGCAC
GCCGGCTCCGGCCAAGAAGGAGAAGAGCATCCTCGACTTCATCGTCAGCGCCATCGTCAAGGACGAGCAGGAGTTCATCG
AGACCAACCCGCTGCTCAACAAGGTGGACGGCCCGGCTCCGTCCACGGGCGGCACCGCCTCCAGGAAGGCCGGCGGCACC
ACCTCCGGCAAGAAGCCCGCGGCCGGCAGCGAGGGCGGCGGCGGGTTCAACCTCGGCGGCCTCTTCGCCAAGAAAGGCTG
A-------------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G488000
TGTGTTTTTGGTTCATGAGTCAGTCCTGTTTTAAACTTTGGATCTGTGGATTGTTTGTATTGCATATATNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATCTGTATCGTCATTTGTCTTGGGATCTTTCTGTGAG---TTT
TTTTTTACGGTATAAGAGTCTGTATCGTCATTTGCTTTGGGATCTTTTTTTACTGGTAAGAGAC----------------
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-------------------------------------------------------------AGACGAAGCAACGCTGGCC
CTACAACCGAATTGATCCC----ACTTGCGCTTGTGCCGAGC-------------CCACGCTGACCTCTCGCGGGACGCA
CGGCCAGTGCA-------------------C------TGCCGATGGC--------TGGCACGCACACGTAGCTGCGCGTG
GTGAGGATAAGCCGCCTGTGGCCACCATCCCCTCCCGATCGTCTCCCTGCCTCCCACGCATATATGGCCG----------
-CCCGATCGCCACCCTCACCAAGTTCAACACAGTCCCACCATAC----ATACATTTCGCCGCCAAGAATCGCCAAGAAAT
CCAC----GAGAGCCACCTAGCGTTAGCAATGGCATCGGTGGGGTTCGGCAGCAGCGTGGCGGCAGTGGCGC--------
----CGGCGTCGTCGGCGGGGAGGAGTAGCCTTCGCCCGCAGCGGACGCGGCTGGCGGTGCCGGCGGCGACGAGGGGCAC
GCCGGCTCCGGCCAAGAAGGAGAAGAGCATCCTCGACTTCATCGTCAGCGCCATCGTCAAGGACGAGCAGGAGTTCATCG
AGACCAACCCGCTGCTCAACAAGGTGGACGGCCCGGCTCCGTCCACGGGCGGCACCGCCTCCAGGAAGGCCGGCGGCACC
ACCTCCGGCAAGAAGCCCGCGGCCGGCAGCGAGGGCGGCGGCGGGTTCAACCTCGGCGGCCTCTTCGCCAAGAAAGGCTG
AACTACATAAGCACGT-----------GCGCGCGCTTGGGTGCGTGCTTCGATCTCATAGCTCGATTTATTGCTGTAACT
CCATGGAAAACATCGCAGAGATCTGCATATATGTA----CACGCGGTGTAACTACTCAAATGATTCTTGCTGTGATGCCT
TATAGATTTGTATTCTTCTTCACACAACTTCTGGAGTAATTTCTCTCAAAGGCTCAGTATGTCA---------TATACCC
ATGTTAAGCTTTGCTTTGCTAAGATCCCAATACCGACAACCTTTATATCTCTGGGACTGCTGATTTTAAACATAACTAGT
ATATACGG-ATATCTAGATCATAGCCAAAGATTGGTTGGCTGTGATATTCCAATTTATTTACAATGATTAAGAAACTGAA
AAATATC----AGAGGAACAGAGGAAGCTCTTGGGGCACAGCAACAGCAAATTCCCGGTGTTGAAATGGCCAAATCTTTT
C----CCTTTATTTTGTATGGTTGTTCTGCTCAACTTCTTGAGCAGAGATCAACAATTGGATAGAAGCTGTGACAAGTCC
TGCAAACTGCCTTCTGCATG-----------CAGTTATGAAACAAATCCGGGAAAGAATAAACAGAATGTTTCACGAAAT
CCCAATCGACTCGACAAGTTCAAACGGACTCTGATCGTATATCTGTACAG----TTGATAGGAGGCCTTGCCGTGCGAAT
ATTTTCGTGTTACAGTCGCGCCAGGAGAGTGAACATTAGGACTTGGACATCTTTGCCTTTGCGAAGAATATCCCAGCAAA
AAGACCTGCAGATGTTAAGATCAAGTACAGAGATGCATCAGAGGTTGC-ACTCATAGGGTAGCAAGGCAGCATGTTCATA
ACCCAGTGG--TGATGAAACAGATTACTTACCAAAAACTATGCTGAACAAATTTTCCACACTAACAGGAACATTGAATAG
CAAGACACCAGCAACCGAAATGGGTATCTTGTTTAGTGAGCCAACAAGACTGAAAGGGAGA-AAAGTGATTATCAACATG
TGAATAGAACTTT
>chr5D_594
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---------------------------------TTGCATCTGTATCGTCATTTGTCTTGGGATCTTTCTGTGAGTTTTTT
TCTTTTACGGTATAAGAGTCTGTATCGTCATTTGTTTTGGGATCTTTTTTTACTGGTACTTCCTCCATTCCTAAATATAA
GTCTTTTTAGAGATTCTACTATGGACTATATACGGAGCAAAATGAGTGAATCTACACTAAAATATGTCTATATACATCCA
TATGTACTAATTCATAGTGGAATCTTTAAAAAGACTTATACTTTGGAACGGAGGGAGTAAGAGACGAAGCAGCGCTGGCC
CTACAACCGAATTGATCCC----ACTTGCGCTTGTGGCAAGCCCACGTTGAAGAGCCACGCCGACCTCTCGCGGGACGCA
CGGCCAGGGCCAGTGCACACTGCACCCCACC------CGCCGGTGGC--------TGGCACCGGCACGCACA--CGCGTG
GTGAGGATAAGCCGCCTGTGGCCACCATCCCCTCCCGATCGTCTCCCTGCCTCCCACGCATATATGGCCACCCGCCGGCC
TCCCGATCGCCACCCTCACCAAGTTCAACA--GTCCCACCATAC----ATACATTTCGCCGCCAAGAATATCCAAGGGAT
CCAACCAAGAGAGCTAGTA---GTTAACAATGGCGTCTGTGGGGTTCGGCAGCAGCGTGGCGGCCGTGGCGC--------
----CGGCG---------GGGAGGACGAGCCTTCGCCCGCAGCGGACGCGGCTGGCGGTGCCGGCGGCCACGAGGGGCAC
GCCGGCTCCGGCCAAGAAGGAGAAGAGCATCCTGGACTTCATCGTCAGCGCCATCGTCAAGGACGAGCAGGAGTTCATCG
AGACCAACCCGCTGCTCAACAAGGTGGACGGCCCGGCGCCCTCCGCCGGTGGCACCGCCTCCAGGAAGGCCGGCGGCACC
ACCTCCGGCAAGAAGCCCGCGGCCGGCAGCGAGGGCGGCGGCGGGTTCAACCTCGGCGGCCTCTTCGCCAAGAAAGGCTA
GGCTGAACCAGCCCGCCTAATACGTAGGCGCGCGCTTGGGTGCGTGCTTCCATCTCATAGCTCGATTTATTGCTGTAACT
CCATGAAAAACATCGCAGAGATTTGCATATATGTA----TATGCGGTGTGACTACTCAAATGATTCTTGCTGTGATGCCT
TATAGATTTGTATTCTTCTTCACACAACTTCTGGAGTAATTTCTCTCATGT--------TGTGA---------TGTACCC
ATGTTAAGC-TTGCTTTGCTAAGATCCCAATACCGACAACCTTTATATCTCTGGGACTGCTGATTTTAAACATAAGTATA
TATATATATATATCTAGATCATAGCCAAAGATTGGTTGGCTGTGATATTCCAATTTATTTACAACGATTAACAAAACTGA
AAATATCAGAGAGAGAAACAGAGGAAGCTCTTGGGTCACAGCAACAGCAAATTCCCGGTGTTGAAATGGCCAGATCTTTT
CCACTCCTTTATTTTGTATGGTTGTCCTGCTCAACTTCTTGAGCAGAGATCAACAATTGGATAGAGTTTGTGGCAAGTCC
TGCAAACTGCCTTCTGCATGCTTGCTTGACACAGTTACGAAACAAATCTGGGAAAGAATAAACAGAATGTTTCACGAAAT
CCCGATCGACTCGTCAAGTTCAAACGGACTCTGATCGTATATCTGTACAG----TTGATAGGAGGCCTTGCCGTGCGAAT
CTTTTCGTGTTACAGTCACGCCGGGAGAATGAACATTAGGACTTGGACATCTTTGCCTTTGCGAAGAATATCCCAGCAAA
AAGGCCTGCAGATGTTAAGATCGAGTAGAAACATATATCAATCAGAGATACTCTTGGGGTAGCGAGGTAACATGCAACAT
AACTCAACACTTGATGAAAGAAAATACTCACCGAAAACTATGCTGAACAAATTTTCCACGCTAACAGGGACGTTGAATAG
CAAGACACCAGCGACCGAAATGGGTATCTTGTTTAGTGAGCCAACAAGGCTGAGAAAAGGAGAAAATGATTATCAACATG
TGAATAGAACTTT
>chr5B_662
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------------------------TCGTCATTTGGCTTGGGATCTTTTTGTGACTTTTTTACGGCA--------------
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----------------------------------------------------------AAGAGACGAAGCAACGCTGGCC
CTACAACCGAGTCGATCCCTGCCACTCGCGCTTGTGCCGAGC-------------CCGCGCCGACCTCTCGCGGGACGCA
CGGCCAGTGCA-------------------CCCCACCCGCCGGTGGCTGGCACCGTGGCACGCATACGTAGGTGC-----
----GGATAAGCCGCCTGTGGCCACCATCCCCTCCCGATCGCCTCCCTGCCTCCCACGCATATATGGCCACCCGCCCGCC
TCCCGATCGCCACCCTCACCAAGTTCAACA--GTCCCACCATACATCCATATCTATCGCCGCCAAGAATCGCCGAGAAAT
CCAG----GAGAGCCAGTA---GCTAGCAATGGCGTCTGTGGGGTTCGGCAGCAGCGTGGCGGCCGTGGCGCCGGCGTTG
TCGACGGCG---------GGGAGGACGAGCCTTCGCCCGCAGCGGACGCGGCTGGCGGTGCCGGCGGCGACGAGGGGCAC
GCCGGCTCCGGCCAAGAAGGAGAAGAGCATCCTGGACTTCATCGTCAGCGCCATCGTCAAGGACGAGCAGGAGTTCATCG
AGACCAACCCGCTGCTCAACAAGGTGGACGGCCCGGCGCCCTCCGCCGGCGGCACCGCCTCCAGGAAGGCCGGCGGCACC
ACCGCCGGCAAGAAGCCCGCGGCCGACAGCGAGGGCGGCGGCGGGTTCAACCTCGGCGGCCTCTTCGCCAAGAAAGGCTA
GGCTGAACCAGCCCGCCTAATACGTAGGCGCGCGCTTGGGTGCGTGCTTCGATCTCATAGCTCGATTTATTGCTGTAACT
CCATGAAAAACATCGCAGAGATCTGCATATATGTACGTACACGCGGTGTGACTACTCAAACGATTCTTGCTGTGATGCCT
TATAGATTTGTATTCTTCTTCACACAACTTCTGGAGTAATTTCTCTCAAAGGCTCAGTATGTGCATGTTGTATTGTACCC
ATGTTAAGC-TTGCTTTGCTAAGATCCCAATACTGACAACCTTTATATGTACCCATGTCCG-------------------
----TACATATATCTAAATCATAGCCAAAGATTGGTTGGCTGTGATATTCCAATTTATTTACAGCGATTAACAAA-CTGA
AAAAATCAGAGAGAGGAACAGAGGAAGCTCTTGGGTCACACCAACAACAAATTCCCAGTGTTGAAATGGCCAAATATTTT
C----CCTTTATTTTGTATGGTTGTCCTGCTCAACTTCTTGAGCAGAGATCAACAACTGGATAGAGTCTGTGGCAAGTCT
TGCAAACTGCCTTCTGCATGCATGCTTGACACAGTTATGAAACAAATCTGGGAAAGAATAAACAGAATGTTTCACGAAAT
CCCGATCGACTCGACAAGGTCAAACGGACTCTGATCATATATCTGTACAGTTGATTGATAGGAGGCCTTGCCGTGC-AAC
CTTTTCGTGTTACAGTCACGCCATGCAAATGAGCATTAGGACTTGGACATCTTTGCCTTTGCGAAGAATATCCCAGCGAA
AAGACCTGCAGATGTTGAGATCGAGTAGAAAACCATATCAATCAGGGATACTCTTGGGGTAGCGAGGTAACATGCGGCAT
AACTCAACACTTGATGAAAGAAAATACTCACCGAAAACTATGCTGAACAAATTTTCCACGCTAACAGGGACGTTGAATAG
CAAGACACCAGCGACCGAAATGGGTATCTTGTTTAGTGAGCCAACAAGACTAAAAAGGAGAGG-AATGATTATCAACATG
TCAAGAACTTT--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------
-S--------------------------------S-----------------------SS-SSS----------------
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-------------------------------------------------------------S------------------
-------------------------------------S----S----------------------------S--------
---------------------------------------------------------------------S----------
------------------------------SS------------------------------------------------
---S------------SSSSSS------------S--S--------------------------S---------------
---------SSSSSSSSS-------SS-----------------------------------------------------
---------------------------------S----------------------------------------------
-------------------------------------S--S---S-S---------------------------------
-------------------------------------------------------------------------------S
SS--SS-SS---S--S----------------------------------------------------------------
-----S-------------------------------------------S------------------------------
--------------------------------------------------------------S-----------S-----
---------S-----------------------------------------------------------------S--SS
SSSSSSSS--------------------------------------------------------S------S---SSSS-
-----------------------------------S--------------------------------------------
-------------------------S---------------------------------------SS-----S-------
------------------------------------------------S-------------------------------
---S----------------------------------------------------------------------------
S----------------S----------S---------------------------------------------------
----------------------S----S-S-S--SS----SSSSSS-S-----S-S-------S---S-S----SSSSSS
-S-SSSSSS----------S-S-S----S---S--------------------------S--------S--S--------
------------S------------------------------------------S---------S--------------
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>forward_1218
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------------------------------------------------------------------------------AG
AAATCCACGAGAGCCACC--------------------------------------------------------------
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>reverse_2146
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-----------------------------------------------------------------AGCTGTGACAAGTCC
TGCAA---------------------------------------------------------------------------
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