>input_sequence_82680
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----------------------------ATGGCGTTCAACAGCGCTCAACTGCTTGCTGCCTTCTCCTTGGCCCTGCTCC
TCATTTCCTCCCGTAAGTTAAGCTGGCTCGGATCGTAGTACTGAA-TTCCGAATTGTAAATTAGGATCATGGAAACACTT
ACTAACATGATTTTTCGGGTGCATCTGTAAATTTTTTGGTTCAGGCGCTAAGCTGAAAGATTGTGCCCGTATTGATATTG
GTGAATGCAACCAACATAAATGCATTACGGCCTGCATCAAATTAAACTACAATACGGCTATCTGCGATAATCACGCAACC
AGCGAAGACAGCGGAGGAGACGTTTCCTTGAACGAGATGGGGTTATACGGGTCGTGCGTGTGTTGTTAG-----------
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>chr3B_1_TraesCS3B01G605300
GTAATTTGATAAGATACGAAAAAGATATGTTGTTTTTGTTATATT-GTAAAGTTGTGATTGCCATTTAAT---AGTATAG
ATAATGATAATGATAAATGGGATAATGCACCCGA---GCGATTCGTTTTTGAGAATTGTGTGATTTTGTTTTGGAAGAAT
ATTGGCAAAAAACTTATGTATGTCTTTTAGAAAGATTATCTCACATATATGTTGGGATTTCTGAATTCTGAATTTCCTAT
TATTTACTATTATTTTTCTAAATGAATTGAACCAGCGACTACCAGAGCAAGCATCACACAAGATCTCCCCCTTTAATTGG
A-TTGGGTTTTTAATGTACGGGAGAAA-----------------------------------AATCCAATGGGATGGGGT
GTTGAGAGATGAGGCGAAAATAAACCAATGCAATGGGGATGATGGGAGGTTAGACAAAAATAAACAGGTGAGGCAAAAAT
AAACCAGGATATCGAGATACCAACTTCCCTTTTAGAGTAGAGATAAG------------AGTAGAGATTGATCAATGATA
ACTGATTTGCGCCTATATC--TATACCAATAT-AAAAAGACCCAAGAAACACATTCAATTAATCTCGGCCATCAAAACAG
GTCAATCAAATGACCTAGATAACAAAT-AATTAATGTTTGTGCTTATCTCACAAATAATGTTTAATTTAAATTCTACCTA
ATATCTACATGCAATTAATTTTCTACATAATATCAACGTTCATTACCCGTGTATACGTATTTACTACTACAATATTTATT
CGGGTTATTGACGAACGCACACTACCGACCTTTGTCATAAGCCACA----AGCTGGGGTTAGAGATTAGGCAAGTATTAA
TCAACATTAATGAACACAATTAATTCTGCCCAACATGCAACATTTTGATACACATATCCTTCTCAGATATTAATGCAGGG
CCAAGAGGCTAAGACTTCCATTACTTGTATAAATAGCACTGTG-----ATGTTGTTCTCCTCACACTCGCATCCCATCCA
ACAATTTCATTGGATCGAGCAATTGGTCATGGCGTTCAACAGCGCTCAACTGCTTGCTGCCTTCTCCTTGGCCCTGCTCC
TCATTTCCTCCCGTAAGTTAAGCTGGCTCGGATCGTAGTACTGAA-TTCCGAATTGTAAATTAGGATCATGGAAACACTT
ACTAACATGATTTTTCGGGTGCATCTGTAAATTTTTTGGTTCAGGCGCTAAGCTGAAAGATTGTGCCCGTATTGATATTG
GTGAATGCAACCAACATAAATGCATTACGGCCTGCATCAAATTAAACTACAATACGGCTATCTGCGATAATCACGCAACC
AGCGAAGACAGCGGAGGAGACGTTTCCTTGAACGAGATGGGGTTATACGGGTCGTGCGTGTGTTGTTAGATT--------
TTATGGGCTTCCTCCTCGTAAAATTGTAAACCTTTGCCCTGTCAGATAATAAAAATCCAAGGACTCTTCTGGCTCGAATT
TGATTTCCTT-------GTCCTGCGC--GTGTGTACAACCGCGGATCATGTCGTGGGGCCCACCACCTTATGTCTTCCCC
TTCCTCTCTTCTCATCCA---------------CTACTTTCTCTAATCCATTCCGGCCGCTCTTATCCATTCCTCAATCC
CTTGAGATAGACAGAGAG--CGAGCGAGAGCTCGAGGAGCTAGACAGGCAGAGTGGTGGTAACCTCCTCCACCGCGGAGA
GCTCGAGGAGAGTAGCAAGCGGCTGGGACGGAGATGCACACGAAGGGGCCGCCGACGGCTTGCG----------------
--------------------------GTGTACTCCAACCGCTGGCTACGGTGGCGCAGGCGTCAATCTAAAGCATCTCGC
CAGCGGCCCGGCGCGGCAAGATTTAATGAGCGGGATCGACAGCAGCTGGTGGACGGTGGTGCTCGACCGACGCGGCGAGC
CGGAGCCG------------------------------------------------------------------------
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---------AAATCTCGCGGAAGTGAGGGTGCCAAGGTACTGCTCAATGCATGAATTCATTTTGGAGGAAGCATAGTAAG
ATCGTCTGTAATTTAGCTCGCTCCTGATATGATTCCGTCTACTGTTGCTAGCAGAGCAGACATGATAGACTTGCCGCATT
TTTTCAAGTCAAGTTTCGCTTAGATCTCCCTTGTTTCTTGCTAGCTAGCACCATAAGCATTGCTTCTTTTTCAACATTAA
CTTTCTTCAGATTTTGTTAAGAAATGCCCGTCTATGTTAATCAGAATTGCCTACATCATGCAGCGTCCTTTCTGAATTCT
GCGACGTCAAGCAGCTGGGTCTCTTTTTTTCGAAAAGGAGAGACTCCCCGACCTCTGCATCTGAACGATGCATACAACCA
CATTTAAATATAAATAGAGGTTCAACAAGGTCTGAAAGTCCGAAAACAAAAAAACAGCAAGCTCACACAGAGCCACAACG
CCAAAAACAGAAGGCCCAAAAGCCAC------------------------------------------------------
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>chr2D_4
---ATTTCATAAGATACGAAAAAGATATGTTGTTTTTGTTGTATTAGTAAAGTTTCGATTGTCATTTAATAGTAG---AG
ATAATGATAATAATAAATGGGATAATGCACTCGATTAGCGATTCGTTATTGAGAATTGTTTGATTTTGTTTTGGAAGAAT
ATTGGGAAAAAACTTATGTATGTCTTTTAGAAAGATTATCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCAATGGGATTGGGT
GTTGAGAGATGAGGCGAAAATAAACCAATGCAAGGGGGATGATGGGAGGTTAGACAAAAATAAACAGGTGAGGCAAAAAT
AAACCAGGATATCGAGCTACCAACTTCCCTTTTA------------G------------AGTAGAGATTGATCAATGATA
ACTGACTTGCACCTATATCTATATACCAATAT-AAAAAGACCCAAGGAACACATTCAATTAATCTCGGCCATCAAATTAG
GTCAATCAAATGTTTGTGCTTATCTCACAATTAATGTTTGTGCTTATCTCACAATTAATGTTTAATTTAAATTCTACCTA
ATATCAACATGCAATT-ATTTTCTACATAATATCAACGTTCATTACCCGT--ATACGTATTTACTACTACAACATTTATT
CGGGTTATTCACGAATGCACACTAGCGACCTTTGTAATAAGCCACAAGCTAGCTGGGGTTAGAGATTAGGCAAGTATTAA
TCAACATCAATGAACACAATTAATTCTGACCAATATGCAACATTTTGATTAACATATCCTTCTGAGACATTAATGCAGGG
CCAAGAGGCTAAGACTTCCATCACTTGTATAAATAGCACTCCATCATCACGTTCTTCTCCTCACACTCCCATCGCATCCA
ACAATTTCATTTGGTCGAGCAATTGGTCATGGCGTCCAACAGCGCTCAACTGCTTGCTGCCTTCTCCTTGGCCCTGCTCC
TCATTTCCTCCGGTAAGTTAAGCTGGCTCGGATCGTAGTACTGAAATTCCGTATTGTAAATTAGGATCATGGAAACACTT
ACTAACATGATTTTTCGGGTGCATCTGTAAATTGTGTGGTTCAGGCGCTAAGCTGAAAGATTGCGCCCGTATTGATATTG
GTGAATGCAACCAACATAAATGCATTACGGCCTGCATCAAATTAAACTACAATACGGCTATCTGCGATAACGACGCAGCC
AGCGAAGACAGCGGAGGAGACGTTTCCTTGAACGAGATGGGGTTATACGGGTCGTGCGTGTGTTGTTAGATTTTATT---
TTATGGGCTTCCTCTTCTTAAAATTGTAAACC-TTGCCCTGTCAGATAATAAAAATCCAAGGACTCTTCTGGCTCGAATT
TGATTTCCTT-------GTCGTGCGCGTGTGTGTACAACCGCGGATCG----------------------TGTCTTCTCC
TTTCTCTGTTCTCGTCCGTGTGTGTGTGTTCTTCTCCTTTCTCTAATCCATTCCTGCCGCTCTTATCCATTCCCCAATCC
CTTGAGATAGACAGAGAGAGCGAGCGAGAC-----GGAGCTAGCCAGACAGAGTGGTGGTACCCTCCTCCACGGCGAAGA
GCTCTAGGAGTGTAGCAAGCGGCTGGGACGGTGATGCGCACCAATGGGACGCCGACGGCTTGCGCGTTGGCAACGCCGAG
AGAGCA--------GGAGCGGCCGCGGTGTACTCCAACCGCTGGCTATGATGGCGCAGGCGTCAATCTAAAGCATCTCGC
CGGCGGCCCGGCGCGGCAAGATGTAGTGAGCGGGA-------------GTGGACGGTGGTGCTCGACCGACGCGGCGAGC
TGGAGCCG------------------------------------------------------------------------
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---------AAATCTCGCGGGAGTGAGGGTGCCGAGGTACTGCTCAATGCATGAATTCATTTTGGAGGAAGCATAGTAAG
ATCTTCTGTAATTTAGCTCGCGCCTGATCTGATTCCGTCTGCTGTTGCT-----AGCAGACATGGAAGACTTGCCACATT
TTTTCAAGTCAAATTTTGCTTAGATCTCCCGTGTTTCTTGCTAGCTAGCACCATAGGCACTGGTTCTTTTTCAACATTAA
CTTGCCTCAGATTTTGTTAAGAAATGTCCGTCTATGTTAATCAGAATTGCCTACATCAAGCAGCGTCCTTACTGAATTCT
GTGACATCAAGCAGCTGGGTCTC---------------------------------------------------------
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>chr2B_9
--------ATAAGATACGAAAAAGATATGTTGTTTTTGTTGTATTAGTAAAGTTTTGATTGTCATTTAATAATAGTAGAG
ATAATGATAATAATAAATGGGATAATGCACTCGATTAGCGATTCGTTATTGAGATTTGTTTGATTTTGTTTTGGAAGAAT
ATTGGGAAAAAACTTATGTATGTCTTTTAGAAAGATTATCTCACATATATGGTGGGATTTCTGAATTCTTAATTTCCTAT
TATTTACTAATATTTTTGTAAATGAATTGAACCAACAACTACCAGAGCAAGCATCAAACATGAACTCCCCCTTTAATTGG
ATTTGGTTTTTTAATGTGCGGGAGAAA-----------------------------------AATCCAATGGGATTGGGT
GTTGAGAGATGAGGCGAAAATAAACCAATGCAAGGGGGGTGATGGGAGGTTAGACAAAAATAAACAGGTGAGGCGAAAAT
AAACCAGGATATCGAGCTACCAACTTCCCTTTTA------------G------------AGTAGAGATTGATCAATGATA
ATTGATTTGCACCTATATC--TATACCAATAT-AAAAAGACCCAAGAAACACATTCAATTAATCTCGGTCATCACATTAG
GTCAATCAAATGACCTAGGTAACAAAT-AATTAATGTTTGTGCTTATCTCACAATTAATGTTTAATTTAAATTCTACCTA
ATATCAACATGCAATTAATTTTCTACATAATATCAACGTTCATTACCCGT--ATACGTATTTACTACTACAACATTTATC
CGGCTTATTCACGAACGCACACTAGCGACCTTTGTAATAAGCCACAAGCTAGCTGGGGTTAGAGATTAGGCAAGTATCAA
TCAACATCAATGAACACAATTACTTCTGACCAATATGCAACATTTTGATTAACATATCCTTCTGAGACATTAATGCAGGG
CCAAGAGGCTAAAACTTCCATCACTTGTATAAATAGCACTCCATCATCACGTTCTTCTCCTCACACTCCCATCGCATCCA
ACAATTTCATTCGATCGAGCAATTGGTCATGGCGTTCAACAGCGCTCAACTGCTTGCTGCCTTCTCCTTGGCCCCGCTCC
TCACTTCCTCCGCTAAGTTAAGCTGGCTCGGATCGTAGTACTGAAATTCCGTATTGTAAATTAGGATCATGGAAACACTT
ACTAACATGATTTTTCGGGTGCATCTGTAAATTGTGTGGTTCAGGCGCTAAGCTGAAAGATTGCGCCCGTATTGATATTG
GTGAATGCAACCAACATAAATGCATTATGGCCTGCATCAAATTAAACTACAATACGGCTATCTGCGATAATCACGCAACC
AGCGAAGACAGCGGAGGAGACGTTTCCTTGAACGAGATGGGGTTATACGGGTCGTGCGTGTGTTGTTAGATTTTATTATT
TTATGGGCTTCCTCTTCTTAAAATTTTAAACC-TTGCCCT-TCAGATAATAAAAATCCAAGGACTCTTCTGGCTCGAATT
TGATTTCCTT-------GTCGTGCGCATGTGTGTACAACCGCGGATCGTGTCGTGGGGCCCACCACCTTATGTCTTCCCC
TTCCTCTGTTCTCGTCCGTGTGTGTGT--TCTTCTCCTTTCTCTAATCCATTCCTGCCGCTCTTATCCATTCCCCAATCC
CTTGAGATAGACAGAGAGAGCGAGCGAGA-----AGGAGCTAGCCAGACAGAGTGGTGGTACCCTCCTCCACGGCGAAGA
GCTCTAGGAGTGTAGCAAGCGGCTGGGACGGTGATGCGCACCAATGGGACGCCGACGGCTAGCGCGTTGGCAACGTCGAG
AGAGCA--------GGAGCGGCCGCGGTGAGCTCTAACCGCTGGCTATGATGGCGCAGGCGTCAATCTAAAGCATCTCGC
CGGCGGCCCGGCGCGGCAAGATGTAGTGAGCGGGAGCGACAACAGCTGGTGGACGGTGGTGCTCGACCGACGCGGCGAGC
TGGAGCCGAAATCTCGCGGGAGTGAGGGTGCCGAAGGGTCTGCTCAATGCATGAATTCATTTTGGAGGAAGCATAGTAAG
ATCTTCTGTAATTTAGCTCGCGGCCGCTGGTTCTTTTTCAACATTAACATGCCTCAGATTTTGTTAAGAAATGCCCGTCT
ATGTTAATCATAATTTCCTACATCAAGCAGCGTCCTTTTTGAATTATGTGACATCAAGCAGCTGGGTCTCGTACAGCTGA
AATTGCTTCAGACAACATTATTCATCATACGGGGATAGAAAATGTTATTGATTTTGAATGACATTTTCACAAGCACCGGT
AGGCAATTATACCCAAGCACTGGTTCTTCACCTTTTTCGACAGCAGCTGGTGGACGGTGGTTCTCGACCGACGCGTCGAG
CTGGAGCCGAAATCTCGCGGGAGTGAGGGTGCCGAGGGTCTGCTCAATGCATGAATTCATTTTGGAGGAAGCATAGTAAG
ATCTTCTGTAATTTAGCTCGCGCCTCATCTGATTCCGTCTGCTGTTGCT-----AGCAGACATGGAAGACTTGCCACATT
TTTTCAAGTCAAATTTTGCTTAGATCTCCCGTGTTTCTTGCTAGCTAGCACCATAGGCACTGGTTCTTTTTCAACATTAA
CTTGCCTCAGATTTTGTTAAGAAATGCCCGTCTATGTTAATCAGAATTGCCTACATCAAGCAGCATCCTTTCTGAATTCT
GTGACATCAAGCAGCTGGGTCTC---------------------------------------------------------
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>chr3A_301
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-------------------------------------------------------------------CCCCTTCAATTGG
ATTTGATTTTTTAATGTGCGGGAGAAA-----------------------------------AATCCAATGGGATGGGGT
GTTGAGAGATGAGGCGAAAATAAACCAATGCAAAGGGGATGATGGGAGGTTAGACAAAAATAAATAGGTGAGGCGAAAAT
AAACCAGGATATCAAGCTACCAACTTCCCTTTTA------------GATTAGAGATAAGAGTAGATATTGATCAATGATA
ACTGATTTGCACGTATATC--TATACCAATATAAAAAAGACCCAAGGAACACATTCAATTAATCTCGGCCATCAAAATAG
ATCAATCAAATGACCTAGATAAGAAAT-AATTAATGTTTGTGCTTATGTCACAATTAATGTTTAATTTAAATTCTATCTA
ATATCAACATGCAATTAATTTTCTACATAATATCAACATTCATTACCCAT--ATACGTATTTACTACTACAACATTTATT
CAGGTTATTCACGAACGCACACTAGCGACCTTTGTCATAAGCCACA----AGTTGGGGTTAGATATTAGGCAAGTATTAA
TCAACATTAATGAACACAATTAATTCTGACCAACATGCAACATTTTGATACACATATCCTTCTCAGATATTAATGCAGGG
CCAAGAGGCTAAGACTTCCATCACTTGTATAAATAGCACTCCATCATCATGTTCTTATCCTCACACTCCCATCGCATCCA
ACAATTTCGTTGGATCGAGCAATTGGTCATGGCGTTCAACAGCGCTCAACTGCTTGCTGCCTTCTCCTTGGCCCTGCTCC
TCATTTCCTCCGGTAAGTTAAGCTGGCTCGGATCGTAGTACTGAAATTCCGTATTGTAAATTAGGATCATGGAAACACTT
ATTAACATGATTTTT-GGGTGTATCGGTAAATTGTGTGGTTCAGGTGCTGCGCTGAAAGATTGCGCCCGTATTGATATTG
GTGAATGCAACCAACATAAATGCATTACAGCCTGCATCAAATTAAACTTCAATACGGCTATCTGCGATAATGACGCAACC
AGCAAAGACAGCGGAGGAGACGTTTCCTTGAACGAGATGGGGTTATATGGGTCGTGCGTGTGTTGTTAGATTTTATT---
TTATGGGTTTCCTCTTCTTAAAATTGTAAACC-TTGCCCTGTCAGATAATAAAAATCCAAGGACTCTTCTGGCTCGAATT
TGATTTCCTTGTCGTTCGTCGTGCGCGTGTGTGTACAACCGTGGATCGTGTCGTGGGGCCAACAACCTTATGTCTTCCCC
TTCCTCTATTCTAGTCCA---------------CTCCTTTCTCTAATCCATTCCGGCCGCTCTTATCCATTCCTCAATCC
CTTGAGATAGATAGAGAGAGCGAGCGAGAC-----GGAGCTAGCCAGACAGAGTGGTTGTACCCTCCTCCACGGAGGAGA
GCTCTAGGAGTGTAGCAAGCGGCTGGGATGGAGATGCGCACGAAGGGGACGCCGACGGCTTGCGTGTTGGTAACGCCGAG
AGAGCAGCAGCAGGGGCGCGGCCGCGTAAAAATCCTGAAAAAAGAGCTAGGTCGGGTCTACGCTCCCCTTTT--------
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------------------------------GGTGATAAAAGAAGCACAAGATTTATAAGAACATATTACGCCGGTGCGCA
AAACCAGTCCATCGGCCCATCAATCTGGACCACCCAAGAAAAAATTATGTGTTTTATTCACACTTCTCAAGACTCGATTA
TCAACTGTAAGCTTTCTGCTTGTGGAGATATTTTCTAAAATGCCAA----------------------------------
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---------------------------------------------------------------AACGCTATATATATATA
TATATATATATATATATATATATATATATATATATATGCCCGTGCGTTGCAACGGGGTAGAATTTGTTGTGTTTATTGAC
CGCCAACGTCCCATAACAACATTCAAAAGGTACCACCAAAATATGTCCATCAATTGCAATGGAAGAAACAAAAATCACTT
TACTCTCCTATCCCAGTAAGCATGTAATGATTTAAGCCTAAACTTAGCCTAAAAACCTAAGCAAAAACTTAAATATACGC
TTTTATAATGTTTCTGTCACAAGCGTCAACTTTAGGGGTAAAAAAGGAACTTACTCTTTCATTTATGATAAACTTCAATT
ATTCCGGCCATGAATATGAATTATGTGCTTTCAGCATGACCAGTTTTGCAAAAATGCTACACCTCCGCATAACTATTCAA
CAATTAATATTAAAATTGTAAACCTTGCCCTGTCAGATAATAAAAATCCAAGGACTCTTCTGGCTCGAATTTGATTTCAT
TGTCATGGGGCCCACCACCTTATGTCTTCACCTTCCTCTATTCTCGTCCACTCCTTTCTCTAATCCATTCCTGCCGCTCT
TATCCACAGAGAGCGAGCGAGAGCTCGGTGAGCTAGCCAGACAGAATGGTGGTAAGGTAACCTCGTCCACGGCGAAGAGC
TCGAGGAGAGTAGCAAGCGGCTGGGCCGGACATGCGCACAAAGGGG
>SNPs
SSS----S--------------------------------S-------------S------S---------------S--
-----------S------------------S----------------S-----------S--------------------
-----S---------------------------------------------S-----------------S----------
---------S-------S----------------S-S-------------------S---S--S----------------
------S----------S--------------------------------------------------------------
---------------------------------S----------------------------------------------
----------------S-----------------SSSSSSSSSSSS----------------------------------
----------S------------------------------------------------------------------S--
------------------------------------------------------S-------------------------
-----S--------------------------------------------SS--------------------S-------
---------S--------------S-------------------------------------------------------
----------------------------S---------------------------------------------------
---------------------S------------------SSS----------S--------------S----S------
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-----------S---------------------------------------S----------------------------
---------------------------------S-S---------------------------S----------------
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--------------S--S--------------S-----------------------------------------------
--------------------S--------------------------S--------------------------------
-------S-----S---------------------S--------------------------------------------
-----------------------------SSSSS---------S---S-------------S----------S-------
----S-----S--------------------------S----------S-------------------------------
-----------------------------------------------S--------------------------------
-S--------------------S--S---------S-----S--------------------------------------
S-------------------------------------------------------------------------------
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--------------------S------------S----------------------------------------------
---S-----------------S------S-----------S--------SSSSS----------SS---------S----
------------S---S-------------S------------------------S---S--S-----------------
---S-S----------------------------------------------------S---------------------
-S---S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-SS---S-SSS-
S--S--S-----S---S-SS-SS-SSS-SS-S-SS-S-S---SSSSSSSS--SSSS-S-SSS-SSSSSSSSSSS-SSSSS
-SSS--SSSSSSSSSS---S-SS--S------------------------------------------------------
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>forward_1034
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------------------------------------------------------TTCTCCTCACACTCGCATCC------
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>reverse_2726
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-----GTCAAGCAGCTGGGTCTCTT-------------------------------------------------------
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