>input_sequence_82670
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---------------------------------------------------------------ATGCCGAGTGGGGACCA
GGTCGGTGCGTATCGGTTCATGACGTGCCCCTCTTTGTCAACTAGAAACTTGGTGAAGTTCCATTTGATACGCTCTCCAA
ATAGACCGCCTCTCTCTGATTTCAAGAACTTGTACAGCAGGGCAGCATTGTTGCCATTCACGTCGACCTGTTGCCAACTC
AGAAATGTTTAGATCGAAAATAAATGCATTTGTGTTTGGAAGCTATCACACACACACAGAAAATAGAAAGGCATTTTTTC
CGCTGGATAAACCTTGCGAAAAATAGGAAACTCTGCTTGGAAGCGATTGCAAGCAAACTCCACAATCTTCTCATCACTAT
CTGGTTCCTGCCCGGCAAACTGA---------------------------------------------------------
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>chr2B_1_TraesCS2B01G604900
CCCTCCATGATGGGCATTTGTTTTGTAGGGTTTGTATGAAATCTTGAGTTTATCCGGCTCTTACAATCTGAACGAGGGCC
AGCAAAATCAAACCGACGGGATCAGCGTCACGCTCTGCAGCCAGGAGAGGCATATCATTGGAGGTGTTCTGGGTGGAGCA
TTGGTAGCTGCCAGTACTGTGCAGGTAACAGCAGTCTACCAGA----CTTCAACTGAAAAGATACACCCATGTGACCCAT
CTAACAGCATCTACTTTATTTTGTTCCTAATAAACAGATAGGGGTATCATACAGCATAGAAGTTAATAATTCTGTTTGGC
A-TGTGCAGGTGGTACTAGGGACTTTTGTGCAAGCAGGGTCCAAATCAAAGTCCAAGAAAGCCGCGAAACCGCCGGCCTT
TGGTCCCGACTCGCTCACCGGCGCTGGGCCAGACGTGGCGTCGCCCAGCTCAGGACATAACCAAAACCTAACGTCGCCGC
CCTCCGTTGTATCGACGGGAGGGTGGCCTGGCTCTGGGATATTTGACACGAGAAGTTCCAGCATTGATATCAACTCTTCT
AGAGGATAGCTCATATTTGTCGACACTTCCATCTCTCGAGAGATTTTTCTGTTCCCAAAAAGAATACCAAATGTATACTT
TGAAATAGCCCATTCGGTTTTTGAGATCATTCTTAGAGATTACTCTCCAGGCTGTGTTT-TGTTGCATC-AATATATTTT
GTTTGTAATTTTGGGGAAATTA---------TTTCACCGTGTAGAAAACAGAGTAGCATACAACAGACTGGGGTTACTCT
TGATAGAGCAAGTGTACACACACATACAGTAGCGAAAAGAACAAATGAC-ACATACACATGACACGCCGCC----GCATG
ATCTTCCCTGGAG--ATACCTCAAACCTCCAACAGCTTCTTGATGTCATTCTGCGAAAGGCGAAAACATTCAGCAGATGA
ATTACCATGCTGGTGGAGACGAACAATATGGAATATGAACTGTTGAGTTAGAGCATCACCTCAATGCCGAGTGGGGACCA
GGTCGGTGCGTATCGGTTCATGACGTGCCCCTCTTTGTCAACTAGAAACTTGGTGAAGTTCCATTTGATACGCTCTCCAA
ATAGACCGCCTCTCTCTGATTTCAAGAACTTGTACAGCAGGGCAGCATTGTTGCCATTCACGTCGACCTGTTGCCAACTC
AGAAATGTTTAGATCGAAAATAAATGCATTTGTGTTTGGAAGCTATCACACACACACAGAAAATAGAAAGGCATTTTTTC
CGCTGGATAAACCTTGCGAAAAATAGGAAACTCTGCTTGGAAGCGATTGCAAGCAAACTCCACAATCTTCTCATCACTAT
CTGGTTCCTGCCCGGCAAACTGATTGCAAGGGAACGCCAATATCTCCAATCCTGATCGCAGCAGAAAGCATTTCAAAGAT
AAATGAAGATTGAAGACAAAAGTATAC-TGCAAGTTATTTGGCCTGCACAATGGCACATCTTGTCATACAATTTATTTAT
GAT---TCACCGTAAAGAGTATAAGCCTAACATAAAATGTGTATTTCTC---TTCTAC----------------------
CGCTATTTAGCCCCAACGTTGACTCCAGTCTCCAATCTGAAAACTAGCTCAACTTGAATAGT-GGATCCAAACACAGAAC
GGTTTCTGTAATCTCTGTTTGATGGGAAGCAAACTGTTGACCAGGTTCAACTTCTAGGGACTTT----------------
----GTCTTATGAAAGGATGAAAATACGACTT-AAAAAAAATTCAGTCATAGTATAAGCCTCTACCTGAGAAGCCATGCT
CTTGAGCAGCTAG-----CTACGGGTGAAGTTCCACAGC-TTGTCTAGTAAGCAGGTGAAGTGTATTCTTTATGCACACA
TTATGACCAAGAGAAACTACTCAGGTGCCATATCTG------TTGTGTTGATTGAATTGCATCTGCTATGAGTTTGCAGG
GGTTATGACTTATGAGTAATGGCGCATATAAGGTCTTTATGAAACATTT-ACTCAATTTGGGTTA--ATAGTAAAGCCAA
AGCCAATGGCTTGTTCTCTAAAAAAA-TGGAACATTCCCCATGACATATAAAGGTGATGCATCGAAGAGCTTCAAGCATT
ACCCACAATGAGATATACAACCAAACCATTTTAATGGACATAAATCACATCATTTATAACATATATTGTGTTCAGTTTCA
GCACAAACAGCGAATGCTCAATCAGGAAACAATGGTTAAGAGCAATACAGAGTACCTAATCAGT----------------
-------------------------------CAGAGCTACTGCGATTAGTGGATTTGGCATCTGCAAAGCTATAGAAAAC
AA-GTACCTTTCTCCCTGTATTTCTCATAGAGTTGGCCCAGCTCCGTGTAGTTGGAATTTGCCAGACCACTGCAAGAATA
TCAACTCAGTTGTTAAAC--
>chr2A_1
CCCTGCATGATGTGAATG---TTTGTAGGGATTGTATGAAATCCTGAGTTTATCCGGCTCTTACAATCTGAACGAGGGCC
AGCAAAATCAAACCGACGGGATCAGCGTCACGCTCTGCAGCCCGGAGAGGCATGTCATTGGAGGTGTCCTGGGTGGAGCA
TTGGTGGCTGCCAGTACTGTGCAGGTAACAGCAATCTACTAGATCAGCCTCATCTGCTAAGATTCAGACATGGAACCAAG
CTCCT-GCATCCAGATCAACCTCATTTGCTAAGATTCAGA-------CATACAACATAAAAGTTTCTAATCCTGTTTGGC
ATTGTGCAGGTGGTGCTAGGGACTTTTGTGCAAGGAGGATCCAAATCAAAGTCCAAGAAAGCCGCGAAACCACCGGCTTT
CGGTCCCGACTCGCTCACCGGCGCTGGGCCAGATGTGGTGTCGCCCAGCTCAGGACATAACCAAAACCTAACGTCGCCGC
CCTCCGTTGTATCGACGGGAGGGTGGCCTAGCTCTGGGATATTTGACACACGAAGTTCCAACATTGATATCAACTCTTCT
AGAGGATAGCTCATATTTGTCGACACTTCCATCTCTTGAGAGATTTTTCTGTTCCCAAAAAGAATACCAAATGTATACTT
TGGAATAGCCCATTCGGTTTTTGAGATCATTCTTATAGATTACTCTCCAGGCTGTGTTT-TGTTGCATC-GATATAATTT
TGTTTATATTTCAGCGAAAT-GTTA-TTTCCTTTCACCGTGTAGAAAACAGAGTAGCATACAACAGACTGGAGTTACTCT
TGATAGAGCAAGTGTACATACACATACAGTAGCAGAAAGAACAGATGAC-ACATACACATGACACGCCGAC----GCATG
ATCTTCCCTGGAGATATACCTCAAACCTCCAACAGCTTCTTGATGTCATTCTGCGGAAAC----AACATTCACCAAGTGA
ATTACCGTTCTGTTGGAGACGAGGAATACAGAAAATAAACTGTTGAGTTAGAGCATCACCTCAATGCCGAGTGGGGACCA
GGTCGGTGCATATCGGTTCATGACGTGCCCCTCTTTGTCAACTAGAAACTTGGTGAAGTTCCACTTGATACGTTCTCCAA
ATAGACCGCCCCTCTCTGACTTCAAGAACTTGTACAGTGGGGCAGCATTGTTGCCGTTCACGTCAACCTGTTGTCAACTC
AGAAATGTTTAGATAAAAAATAAGTGCATTTGTGTTTGGAAGCTAGCACGCACACAG---AAATGGAAACAAAGATTTTC
GCTGGAATAGACCTTGCGAAAAATAGGAAACTCTGCTTGGAAGCGATTGCAAGCAAACTCCACAATCTTCTCATCGCTAT
CTGGTTCCTGTCCAGCAAATTGATTGCAGGGGAACGCCAATATCTCCAATCCTAATTGCAGCAGAAAACACG-CAACGAT
AAATGAAGATTGAAGACGAAGTATAAAATGCAAGTTATTTGACCTGCACAATGGCACATCTTGTCTTACTATTTATTTAT
AACTCATCATACTAAAGACTTGCAGCCTAACATAAACTGTAGATTTCTC---TTCTATCATTTTTTTTAAGGTCTTCTAT
CATTATTTAGCCCAAGGTTGG-TTCCAATCTCAAATCTGAAAACTAACTCAACTTGAATAGTTGGATCCAAACATAGCAT
AGCTTCTGTAATATCTGTTTGATGGGAAGCAAACTGTTGATCAGGTCCCACTTCTAGGACTTTTTG-------ACACCAC
TGTAGTCTTGTAAAAGC-----AATATGACTTCAAAACACATTCAGTCATAGTATAAGCCTATACCTGAGAAGCCATGCT
CTTGACCAGCTAGGCAAGCTACAGGTAAGTTCTGCTGCTGC--TTTAGTAAGCAGGTGAAGTGTATTCTGTATGCACACA
TTATGACC--GAGAAACCACTCAGATGCCACATCTG------TTGTGCTGATTGGATTGCATTTCTTATGAGTTTCTAC-
----------------------------------------------------------------TCTCTAGTGAAGGCAA
AGACAATGGATTTTTCTCTAAAAAAA-TGGAACATTCCCCGCGATGTACAAAAGTGATGCATCGAAGAGTTTTAATCATT
CCCCACAACA--AGATATAACCATACCATTTAAGTAC-----AAAG----CATTTATATCATATATCGTGTTCAGTTTTA
ATACAAATAGCAAATGAACAA-----AAAACATGGTTAAGAACCGTACAACGTACCAAATTAGAATCTGCTAAACTACTA
AATAAGGCTGGGGTGAATATAATGCATTAGATAGAGCTACTGCTA-TAGTGGAA-TGACATGTGCAAAGCTATAGAAAAG
TAGGTACCTTTCTCCCTGTATTTCTCATAGAGCTGACCCAGTTCCGTGTAGTTGGAATTGGCCAGACCACTGCAGGGATA
TCAACTCAGGTGGTGTAAAC
>chr2D_6
-----CATGATGTGCATTTC-TTTGTAGGGATTGTATGAAATCCTCAGTTTATCCGGCTCTTACAATCTGAACGAGGGCC
AGCAAAATCAGACCGACGGGATCAGTGTCACGCTCTGCAGCCCGGAGAGGCACATCATTGGAGGTGTTCTGGGTGGAGCA
TTGGTAGCTGCCAGTACTGTGCAGGTAACAGCAATTTACCAGA----CCTCAACAGAAAAGATTCAGACATGGAACAAAG
CTCGT-GCATCTACTTTATTTTGTTCCTAAACAGAAAAGA---GTATCATACAGCATAGAAGTTTCTAATCCTGTTTGGC
ATTGTGCAGGTGGTGCTAGGGACTTTTGTGCAAGGAGGGTCCAAATCAAAGTCCAAGAAAGCCGCGAAACCACCGGCTTT
CGGTCCCGACTCACTCACCGGCGCTGGGCCAGACATGCCGTCACCCAGCTCAGGACATAACCAAAACCTAACGTCGCCGC
CCTCCGTTGTATCGACGGGAGGGTGGCCTAGCTCTGGGATATTTGACGCGCGAAGTTCCAACATTGATATCAACTCTTCT
AGAGGATAGCTCATATTTGCCGACACTTCCATCTCTCGAGAGATTTTTCTGTTCCCAAAAAGAATACCAAATGTATACTT
TGAAATAGCCCATTCGGTTTTTGAGATCATTCTTATAGATTATTCGCCAGGCTGTGTTGCTGTTGCATCAAATATAATTT
TGTTTGTATTTCGGCGAAATTGTTATTTTCTTTTCACCATGTAGAAAACAGAGTAGCATACAACAGGATGGAGTTACTCT
TGATAGAGCAAGTGTACATACACATACAGTAGCGAAAAGAACAGATGAC-ACATACACATGAGTGAACACGCCCAGCATG
ATCTTCCCTGGAG--ATACCTCAAACCTCCAACAGCTTCTTGATGTCATTCTGCGAAAGCCGAAAACATTCACCAGATGA
ATTACCATGCTGGTGGAGAAGAACAATATGGAATATAAACTGTTGAGTTAGAGCATCACCTCAATGCCGAGTGGGGACCA
GGTCGGTGCATATCGGTTCATGACGTGCCCCTCTTTGTCAACTAGGAACTTGGTGAAGTTCCATTTGATACGCTCTCCGA
ATAGACCGCCTCTCTCTGACTTCAAGAACTTGTACAGCGGGGCAGCATTGTCGCCATTCACGTCGACCTGTTGCCAACTC
AGAAATGTTTAGATCGAAAATAAGTGCATTTGTGTTTGGAAGCTAGCACACACACAG---AAATAGGAAGGTTTCTTCGT
TGCTTGATAGACCTTGCGAAAAATAGGAAACTCTGCTTGGAAGCGATTGCAAGCAAACTCCACAATCTTCTCATCGCTAT
CTGGTTCCTGCCCGGCAAACTGATTGCAGGGGAAAGCCAATACCTCCAAACCTAATTGCAGCAGAAAACATG-CAAAGAT
AAATGAAAATTGAAGACGAAG--TACAATGCAAGTGATTTGGTCTGCACAATGGCACGTCTCGTCTAACTGTTTATTTAT
AAT---TCATACTGAAGACTTGCAGCCTTACATAAACTGTACGGATTCCTCTTTCTAC----------------------
CACTATTTAGCCCAACGATTTATTCCAATCTCCAATCTGAAAACTAACTCAACTTGTATAGTTAGAGATGAACACAGCAT
CGCTTGTGTCATATCTGTTTGATGCGAGGCAAACTGTTGCCCTGGTTCAACTTTTAGGACTTCTCAACAGTCAACACCAC
TTAAGTCTTATAAATGAACGAAAATACAACTTCAAAACACGTTCAGTCAT-GTATAAGCCTATACCTGAGAAGCCATGCT
CT-GAACAGCTAGGTAAGCTACGGGTAAAAGTCCCACGGTTTGTTTAGTAAGCAGGTGAAGTATATTCTGTATGCACACA
CTATGAT--AAAGAAAATCCGTCAGTGCCATATATGCTGTGCTTGTGCTGGTTGAATTGCCTCTGTCATGAATTCTCAGG
TG-------TTATGAGCAAAGACGTGTATAAGGTCTTAATGAAACATTTTACTCACTTTGGGTTTCTATAGTAAAGGCAA
AGCCAATGGCTTGTTCTCTAAAAAAAATGGAACATTCCCAATGACATATAAAAGTGATGCATCGAAGAGCTTCAAGCATT
CCCCACAATGAGATATACAACCAAACCATTTGACATC-----AATCACATCATTTACAACATATATTGTGTTCAGTTTCA
GCACAAATAGCGAATGCTCGATCAAGAAACAATGGTTAAGAGCCGTACAGAGTACCTAGTCAGT----------------
-------------------------------TAGAGCTACTGCGATTAGTGGAA-TGACATGTGCAAAGCTATAGAAAAC
AA-GTACCTTTCTCCCTGTATTTCTCATAGAGTTGGCCCAGCTCCGTGTAGTTGGAATTTGCCAGACCACTGCAAGGATA
TCAACTCAGGTGGTAAAC--
>chr6B_303
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------------------------------------------------------------------TAATTCTGGTTGGC
A-TGTGCAGGTGGTGCTAGGGACTTTGGTGCAAGGAGGGTCCAAATCAAAGTCTAAGAAAGCCAGGAAACCGCCGGCCTT
CGGT-CCGACTCGCTCACCCGCGCTGCGCCAGACCTGGAGTCAGCAAGCTCAATACATAACCAAAACCTAACCTCACCAC
CCTCCGTTGTGACAAAGCGAGGGG---CTAGCTATGGGATATTTGACACGAGGAGTTCCAACATTGATATCAACTCTTCT
AGAGGATAGCTCATATTTGTCGACACTTCCATCTCTCGAGAGATTTTTCTGTTCCCAAAAAGAATACCGGA---------
---------------------------------------------------------------TGCATC-AATATAATTT
TGTTTATATTTCTGCTATAT-GTTAGTTTCCTTTCACCATATGGAACACACCATAACATACA--AGGCTGGAGTTGCTCT
TAGTAGGGTATAAGAGT----ACATACAACATTGTAAAGAACAGATGGTAACATACACACGACACGCCGATT---GCACG
ATCTTCCCTGGAG--ATACCTCAAACCTCCAACGGCTTCTTGATGTCATTCTG---------------------------
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>SNPs
----S-------S------SS---------S------------S------------------------------------
------------------------------------------S-------------------------------------
---------------------------------S--------------S--------------S--SS----SS---S-S
--SSSS------------------------S---S-S-S-SSS---------------------SS--------------
--------------S-------------------S---------------------------------------------
S-------------------------------------------------------------------------------
-----------------------------S------------------------------S-------------------
--------------------------------------------------------------------------------
-----------------------------------S----------------------------------------S---
SS--SSS----S--S------S-------------------------------------------------S--------
------------------S------------------------S------------------------------------
-----------------------------------------------------------S------------S-------
------------------------------------S-------------------------------------------
---------S----------------------------------------------------------------------
-------------------S------------------S-----------------------------------------
-----------------------S---------------------S----------SSSS-----------S--S-----
S--------S-----------------------------------------------------------------S----
----------------------------S------------------------S--S----------S---SS-------
-----------------S--SSSSS-S--------------------------------------S---S----------
S--------SSS------S-SSS-------------S---SS--------------------------------------
-S-----------S-SSS----S----S------------------S------------------------------S-S
S-S---------S---------------------------------------------SSS-------------------
-----------S----S-S------------------S-S---------------------S------------------
-----S--------------------S--S----SSS-S-----S------------------------S----------
--------S--------------------------------------S-----------------S---------S----
S-SSSSSSS-------S--S-S--SS-----------S-----------------S--------S-----------S---
----------------------------------------------------S---------------------------
S------------------------------S-S-SSSSSSS--------------------------------------
-------S----------------S------------------SS-----------------------------------
-------------------------------S---------------------SS--S---S------------------
----------------------------------------------------------------------------S---
---------S--S-------
>forward_335
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---------------------------------------------------------------------------TTTGG
CATGTGCAGGTGGTA-----------------------------------------------------------------
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>reverse_1846
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-----GCAGCTAGCTACGGGTGAAG-------------------------------------------------------
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