>input_sequence_82660
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-------------------------------------------------------------------ATGGAGGATGACA
AGAAGACCAAGTACCGCGGCGTGCGTACGCGGCCTTGGGGCAAGTTCGCCGCCGAGATCCGTGACCCCGAGCGTGGCGGC
GCCCGCGTCTGGCTCGGCACGTTTGACACGGCCGAGGAGGCCGCGAGGGCGTACGACCGCGCGGCTTTTGCCCAGAGGGG
CGCCACTGCCGTGCTAAACTTCCCCGGCGAGGCCGGGGGCGCCTTCGGCTCGTCTTCGTCCGCCCCGGCTGGCTCCGGTG
CCGGCACGGGCAGGGGTCGCGGGGGCACAGAGAAGATCGAACTGGAGTACCTCGACGACAGCCTCCTGGACGAGCTTCTC
GACGACAGCAAGTACGGTGGTAAATGA-----------------------------------------------------
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>chr1B_1_TraesCS1B01G158400
AGATCACCACGTACGCTATGTTGACACCGGAGTGCTGGAGGCAGATCGCGGAGGATATCTAGGCTAGGCGCGCCACTCGC
ATCGCTGCCGAGCTACCTCCGGACTCGCCGAAGCTGGAGGAG------------GAGGAAG-AGAGGAGCTGGCGGAGCC
GATGGAGGTGGCGGATCCGGAGGAGAACGAGGCAGAGCAACCTGCTCGGGGGTTCATCATGGAGGAGGCGAAGGCGGAGT
TCGCTGTCTCCCAAGTCGCGAAGTTGTGAGAGCAGCAGGCCATCCTGGAGTCCATCTAGGATGTGGCCTATGTGGAGGCC
AACCGGGAGTTTCTCCGGTAGGAGCGGGTGGTGACTGGCGCGCTCTTCACCAAACTCAACGAGGAGATAGAGGAGGAG--
-GCCGGAGCAGAGCAGCCAGAGGAGCTGGAGCTGCAGCGGCCGCCCATGTACCCAGAGCCGGACACGGAGATAGTCGACA
TCTCCAACAAGGAGTAGT-TAGGTGATCTGCGCAGTACGAAGGTTGTTTCGTTTGCATGCTTTTGTAGGGATTTAAGAAT
TT-AGTATGAGGTGTCCGGATGTAGTTGCGGTAATCTGAGGATTGCCCGGTCACTGC----GGGCGCGTTCGCGGGCGTT
TGATGGGCTGGATTTGCCCATCGCGGCTGTATATGCTCTTATATCTCCC-GTTTCTAAATATAAGTCTTTCTAGAGATTT
TCAATATAAATGACATAAGGATGTATATAGATATAGTTTAGAGTGTAAATTTACA-ATTTTGCTATGTATGTAATTCATA
TTGTAT---TAAAATCTATGAAAAGATTTATATTTAGAAAGGAACGGAGGGAGTACCGACGTATATGTACGTACACTGTA
CATGCCCGGCGGCCCGCCTGATCTTTCTATAAATAGCTGCGCGCTGTCCAAAGCTGGTCACATGCAAATTCAGGTCTCAA
CCTTGTCCCTGCTTACTAGACACACAGTACCTAGCTCGCTCTCTCTCTCCCTCCCTCTCATCGAGCAATGGAGGATGACA
AGAAGACCAAGTACCGCGGCGTGCGTACGCGGCCTTGGGGCAAGTTCGCCGCCGAGATCCGTGACCCCGAGCGTGGCGGC
GCCCGCGTCTGGCTCGGCACGTTTGACACGGCCGAGGAGGCCGCGAGGGCGTACGACCGCGCGGCTTTTGCCCAGAGGGG
CGCCACTGCCGTGCTAAACTTCCCCGGCGAGGCCGGGGGCGCCTTCGGCTCGTCTTCGTCCGCCCCGGCTGGCTCCGGTG
CCGGCACGGGCAGGGGTCGCGGGGGCACAGAGAAGATCGAACTGGAGTACCTCGACGACAGCCTCCTGGACGAGCTTCTC
GACGACAGCAAGTACGGTGGTAAATGAGAGAGAGATTCTCTTGCATGCACGTATATATGCATGCATACAGAAGAAATGAC
CTACACAAATACATACTTTTTCCGTAAGAAAATATTTGTCATCAAAATGAATAAGAAGAGATGTATCTAAAACTACACAC
ACATACTGACACACATAT--CATACCACATCCATATGGGTTATATTACGTGATGCATCATGCATTACAA------TACCG
TTCACATATTTGCATTTAGTGGCAATTTCCACCACTGGACCAATGTCATGTATGCTACAAATAACAAA-ATAATCGCTTT
TGTTTCATGCCCTAAACAGAAGACACGCCGAACGTGCACAGTACGCGTACGTATTTCTGTGATGAATGAACTAGATATAT
CATGGCAAAACAAGGCAATA----TGTACGTGTTACTGTTGTATCTATATATACGTGGAGAAAAATAAATGTTGGGTGGC
GGCATCTGCGG---------------ATCATTGTATCTAGCTCTAATGGAATCTGCGGATCATATCGTTGAGCCGCCATT
GTAATGTTATCAATGTGGCAATTGCAAACCTGACATTTCTGGTAATATTATATGGCAATTCTCGTACCATCCAGCATGCG
TGAAACGTGATATTCTCTTTGCTTTCATGGAACATTGACATATATGTTCGGTCGTTGCACGCTAAAGCTGGCCAATAGAG
CCACCGCTTTAGTGCTATGTTTTTGTGCATATTATGGTGGTGCATGGTTGCATGCATGAATGTGCTAAACCTTTATGGTT
CTCTTCGCGTGTGTAATCTATG----GGCTGCGGCTGCTTACCATCTCTTTGGTTGACATGCATGAATGTGGACCTTGGA
AGACCATTGGCTGAGCGGCTGCTCTAGTAAACAAAAGCACG-AGAGCTGAGCGGCTGCTCACGTGATTAATTATTAAGGA
ATCTCTGGTAGGTTCATATAAGAGCTTTGGTACAAGTACTCCCTGATTTAAACCACAGACCTCCACCTCGCCTAGTTAAT
TCCCTCTCTCGTCACTGCCA
>chr1A_1
AGACCACCACGTATGCTATGCTGACACCGGAGTGCCGTAGGCAGATCACGGAGGAGATCCAGGCTAGGCTCGCAGCCTGC
ATCAGTTCTGAGCTACCTTCGGACCTGCCGAAGCCGGAGGAG------------GAGGAAGGAGAGCAGCTACCGGAGCC
GATGGAGGTGGCGGATCCGGAGAAGGACGAGGCGGAGCAGCTAGTTCCGGGGTTCACCATGGAGGAGACGAAGGCGAAGT
TCGTTGTCGCCCAAGCCGCGAAGATGGTGGAGTAGCAGGCCATCCTAGAGTTCATCCAGGATGAAACCTATGTGGAGGCC
AACCGGGAATTTCACTAGAAGGAGCGGACGGTGACCGACGCGCTCTTCGCCGAACTCGACGAGGAGATAGAGGAGGAG--
-GCCGGAGCGGAGCACCTGGAGAAGCTGGAGCTGCAGCGGCCGCCCATGTACCTAGAGCCGGGCATGGAGAGAATCGACA
TGTCTGACGAGGAGTAGC-TAGGTGATTTGTGTAGTACGTAGGTTTTTCCGTTTGCATGCTTTTGTATGTATTTAAGAAT
TT-AGTATAAGGTGTCCCGATGCAGTTGCGGTAATCTTAGGATTGCCCGGTCCCTGCCTGCGGGCATGTCCGCACGCGTT
TGATAGGTCGGATTTGCCAATCGCGGTTGTAGATGCTCTTATATCCCCC-GTTTTTAAATATAAGTC-----AGAGG-TT
TCAACATAAATGATATAAGGATGTATGTTGACGTATTTTAGGGTGTAGATTTATTTATTTTACTTTGCATATAGTCCA--
---TAT---TAAAATCTCTAGAAAAACTTATATTTAGAAA----TGGAGTGATTACC----------TACATACACTGTA
CATGCCCGGCGGCCCGCCTGATCTTTCTATAAATAGCTGCGCGCTGTCCAAAGCTAGTCACATGCAAATTCAGGTCTTAA
CCTTGTCACTGCTTACTAGACACACATTACCTAGCTCGCTCTCTCT------CCCTCTCATCGAGCAATGGAGGATGACA
AGAAGACCAAGTACCGCGGCGTGCGTACGCGGCCTTGGGGCAAGTTCGCCGCAGAGATCCGTGACCCTGAGCGTGGCGGC
GCCCGCGTCTGGCTCGGCACGTTTGACACGGCCGAGGAGGCCGCGAGGGTGTACGACCGCGCGGCTTTTGCCCAGAGGGG
CGCCACCGCCGTGCTAAACTTCCCCGGGGAGGCCGGGGGCGCCACCGGCTCGTCTTCGTCCGCCCCGGCTGGCTCTGGAG
CCGGCACGGGCAGGGGTCGCGGGGGCACAGAGAAGATCGAACTCGAGTACCTCGACGACAGCCTCCTGGACGAGCTTCTC
GACGACAGCAAGTACGGTGGTAAATGAGAGAGAGATTGTCTTGAATGCACGTATATATGCATGCATGCAGAAGAAATGGC
CTCCACAAATACATATGTAAACGTAGATGT---------------------------------------AAACTATACAC
GCATAATAACACACATACCACATACCACATCCATATGGGCCATATTACGTGATCCATCATGCATTACAACACAAGTACCG
TTCACATATTTGCATTTAGTTGCAATTTCCACCACTGAATCAATGTCATATATGCTACAAATTACAAAAATAATCGCTTT
TGTTTCGTGCCCTAAACAAAAGACACGCCAGACGTGCACAGTATGCATATGTACTTCTGTGATGAATGAACTAGATATAT
CATGGCAAAACAAGGCAATACATATGTACGTGTTACTGTTGTATCTATATATACGTGGAGAAAAAGAAGTGTTGGGTGGC
GGCATCCATCTTGATATATGTACCCAATCATTGTATCTAGCTCGAATGGAATCTGCGGATCATATCGTTGAGCCGCCATT
GTAATGTTATCAATGTGGCAATTGCAGACCTGACATTTCTGGTAATATTATATGGCAATTCTCGTACCATCCAGCATGCG
TGAAACGTGATATTCTCTTTGCTTTCATGGAACATTGACATATATGTTCGGTCGTTGCACGCTAAAGCTGGCCAATAGAG
CCACCGCTTTAGTGCTATGTTTCTGTGTATATTATGGTGGTGCATGGTTGCATGCATGAATGTGCTAAACCTTTATGGTT
CTCTTCGCGTGTGTAATCTATGTCATGGCTGCGGCTGCTTACCATCTCT-TGGTTGACATGCATGAATGTGGACCTTGGA
AGACCATTAGCTAGA-------TCTAGTAAACAAAAGCACGAAGAGCTGAGCAGCTGCTCACGTGATTAATTATTAAGGA
ATCTCTGGTAGGTTCATATAAGAGCTTTGGTACAAGTACTCCCTGATTTAAACCACAGGCATCCACCTCGCCTTGTTAAT
TCCCTCTCTCGTCAC-----
>chr2A_1
AGATAATCACGTACGATATGCTCATGCTGGAGTGCCGGAGGCAAATCACGGAGGAAATCTAGGCAAGGCGCGTTGCCCGC
ATCGTTAG-GGGCTGCCTCCGGACACCCCAGAGCCGGAGGAG------------GAGG---GAGAGCGGCTGTCGGAGCC
GATGGAGGTGGCAGATCCGGAGGAGGACGAGGTGGAGCAGCCTGCTTCGGGGTTCAACATGACAAAGGCGGAGGTGGAGT
TCGCTGTCGCCCAAGCCACGGAGATGGCAGAGCAGCAGGCCATCCTGGAGTCCATCCAGGATGAGGCCTATGTGGATGCC
AACTGGTTGTTCCTTCGGAAGGAGCAGGCGGCGTCCAACATGCTCTTCACCAAACTCGACGCGGAGATAGAGGGGGAGAA
GGCCGGAGCGGAGTAGCTAGAGGAGCCGGAGCTGCAGCTACCTCCCATGCTGTCGGAGCCGGGCACGGAGATAGTCGACA
TCTCCGATAAGTAGT----TAGATCATCTACGTAGTACGTAGGTTATTTCGTTTATATGCTTTTGTATGGATTTGAGAAT
TT-AGTATGAGA-GTCTCGATACAGTTGTGCTAATTTGAGGAGTGCCCGGTC----------------------------
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>chr3B_1
AGATCACCACATACGCTATGCTCACGCTAGAGCGCCGGTACCAGATCGCGGAGGAGATCCTGGCGAGGCGCGCCGCGCGC
ATCGCTGTCGGGCTACCTTCGGACTTGTCAAAGGAGGAGGAGGAGGAGCCGGAGGAGGAGGGAGTATAGCTGCCGAAGCC
GATGGTGTTGGCGGGTCCGGAGGAGGACGAGGTGGAGCAGCCTGCTCCGGGCTTCAACATGAAGGGCGCGAACGCGGAGT
TTGCCGTCGCCCAAGCCGCGGAAATGACAAAGCAGTGGGCCATCCTGGAGTCCA-CCAGGATGAGGCCTATGTGCAGGCC
AACCGGCAGTTCCTCCGGCATGAGCGGACGACGACTGACGCACTCGTTGGCGAACTCGACGTGGACATAGAGGAGGCG--
-GCCACAGCATAGCATCTGGAGGAACCAGAGCTGCAGCTGCCGCTCATATACCCAGAGCCGGGCACTGAGATAGTCGACA
TCTCCAACAAGGAGTAGCCTAGGTGATCCACATAGTACGTAGATTTTTATCTTTGCATGCTTTTGTATGGATTTAAGAAT
TTTAGTACGAGGTGTCCGGATTCAGTTGTGCAAATTTGAGGATTGATCGGTCACTGCCCGTGGACGCGCCTGCGGGCATT
TGAGGGG-------------------------------------------------------------------------
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>chr7D_1
AGATCACGGCGTACGCTATGTTCACGCTGGAGCGCCGGAGGCAGATCACGGAGGAGATCCAGGCGAGGCGCGCCGCACGT
GCCGCTGTCGAGCTACCTCTGGACTCGACGAAGCCGGAGGAG------------GAGGAGGGACAACCGCTACCGGAGCC
GATGGAGGTGGCGGACTCGGAGGAGGACGAAGCGGAACAGCCTGCTCTGGGGTTCAACATGGCAG------AGGCGGAGT
TCGCCGTCGCCCAAGCCGCGGAGATGCCAGAGCAGCAGGCCATCCTGGAGTCCATCTAGGATGAGGCCTATGTGGAGGCC
AACCGGCAGTTCCTCCGGCAGGAGCAGACGACGTC---------------------CGACGCGGAGATAAAGGAGGAGGA
GGCCGGAGG---------GAAGCAGCCGGAGCTGCAACTGCCCCCCATGTACCCAGAGCCGTGCACGGAGATAGTCGACA
TCTCCCATGAGGAGTAGG-TAGATCATTTACGTGGTATGTAGGTTTTTG-GTTTGCATGTTTTTGTATGGATTTGAGAAT
CT-AATATGAGATGTCCGGATGTAGTTGTGCTAATTTGAGGAGTGTCCGGTCACTGC-----------------------
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>chr1D_641
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----------------------GCGGTTGTAGATGCTCTTATATCCCCATGTTTCTAAATATAAATCTTTCTAGAGA-TT
TCAACATAAACGACATAATGATGTATATAGACGTAGTTTAGAGTGTAGATTGACTTGTTTTGCTCTGTACGTAGTCCA--
---TATTAATAAAATCTTTAAAAAGATTTATATTTAGAAA----CGAAGGGAGTACGTACGTATATGTATGTACACTGTA
CATGCCCGGCGGCCCGCCTGATCTTTCTATAAATAGCTGCTCGCTGTCCAAAGCTAGTCACATGCAAATTCAGGTCTTAA
CCTTGTCACTGCTTACTAGACACACGTTACCTAGCTCGCTCT------------CTCTCATCGAGCAATGGAGGATGACA
AGAAGACCAAGTACCGCGGCGTGCGTACGCGGCCATGGGGCAAGTTCGCTGCCGAGATCCGTGACCCCGAGCGTGGCGGC
GCCCGCGTCTGGCTCGGCACGTTTGACACGGCCCAGGAGGCCGCGAGGGCGTACGACCGCGCGGCTTTTGCCCAGAGGGG
CGCCACCGCCGTGCTAAACTTCCCCGGCGAGGCCGGGGGCCCCTCCGGCTCGTCTTCGTCCGCCCCGGCTCGCTCCGGTG
CCGGCACGGGCAGCGGTCGCGGGGGCACAGAGAAGATCGAACTCGAGTACCTCGACGACAGCCTCCTGGACGAGCTTCTC
GACGACAGCAAGTACGGTGGTAAAT--GAGAGAGATTCTCTTGCATGCACGTATATATGCATGCATGCAGAAGAAATGGC
CTACACAAATACATACGTAAACTATACACG--------------------------------------------------
----------------AT--CATACCACATCCATATGGGCCATATTACGTGATCCATCATGCATTACAACACAAGTACCG
TTCACATATTTGCATTTAGTTGCAATTTCCACCGCTGGACCAATGTCATATATGCTACAAGTTAC-AAAATACTCGCTTT
TGTTTCGTGCCCTAAACAAAAGACACGCCGGACGTGCACAGTACGCATACGTACTTCTGTGATGAATGAACTACATATAT
CATGGCAAAACAAGGCAATA----TGTACGTGTTACTGTCGTATCTATATATACGTGGAGAAAAATAAGTGTTGGGTGGC
GGCATCCATCTTGATATATGTACCCAATCATTGTATCTAGCTCGAATGGAATCTGCGGATCATATCGTTGAGCCGCCATT
GTAATGCTATCAATGTGGCAATTGCAAACCTGACATTTCTGGTAATATTATATGGCAATTCTCGTACCATCCAGCATGCG
TGAAACGTGATATTCTCTTTGCTTTCATGGAACATTGACATATATGTTCGGTCGTTGCACGCTAAAGCTGGCCAATAGAG
CCACCGCTTTAGTGCTATGTTTCTGTGTATATTATGGTGGTGCATGGTTGCATGCATGAATGTGCTAAACCTTTATGGTT
CTCTTCGCGTGTGTAATCTATG----GGCTGCGGCTGCTTACCATCTCT-TGGTTGACATGCATGAATGTGGACCTTGGA
AGACCATTGGCTAGA-------TCTAGTAAACAAACGCACG-AGAGCTGAGCGGCTGCTCACGTGATTAACTATTAAGGA
ATCTCTCGTGGGTTCATATGAGAGCTTTGGTACAAGTACTCCCTGATTTAAACCACAGACCTCCACCTCGCCTTGTTAAT
TCCCTCTCTCGTCACTGCCA
>SNPs
-----------------------------------S-------------------S------------------S-S---
----------------------------------S-------------------------------S-----S-------
-------------------------S-------S-----S-------S--------S-----------------------
--------S------S-------S--SS-----------------------------------S----------------
------------------S---------S--------S-------------------S----------------------
-----------------S--------------------------------------------S-----------------
-----------------S--------------S------S-----S---------------------S------------
---------------------------------------------------------------------S----------
-------SS---------S-------S----S-------------S-------------------------------S--
----S--------------------------SS--------------S------S---------S--------S-S--SS
SSS--------------S-S--------------------SSSS-------------S----------------------
-------------------------------------------------------S---------------------S--
-------S------------------S-------------------SSSSSS----------------------------
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------S-------------------------------------S-----------------------------------
-------------------------------------------S------------------------------------
------------------------------------------------------------------S-----------S-
----------------S-SSS-SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S----
S----S-S-------------------------------SS------------S--------------------------
--------------------S----------------------------S------------S-----------------
------S-----------S-----------S---------------S------S--------------------------
--------------------------------------------------------------------S-----------
------SSSSS--------------------------------S------------------------------------
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----------------------S----S----------------------------------------------------
-------------------------------------------------S------------------------------
------------SSSSSSSSSS----------------------------------------------------------
-------------------------------------------------------------------------S------
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>forward_153
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-----------------------------------------------------AGGAGGAAGAGAGGAGCTGG-------
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>reverse_1711
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------------------------------AACGTGCACAGTACGCGTA-------------------------------
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