>input_sequence_82630
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---------------------------------------------------------ATGGGGCTGCAGGACACGGGCAG
CAGCCGGAGGAGCAGCTTCTTCCAGTACCAGAGGCTGGAATGCCGGGACGACGGGGCCACCCCGCGGCCCAGGCAGCGGC
GGTGGCTGCCGTCTCTGAAC---GGCAAGGCGGCCTGCTCCTGCTTCTTCCATCTCAAGAAGCTCAGGTGGAGCAGGATC
ACTTCGGTCCTCCTGCCAAGGAAGGTCTCCGAGC---------CCTCCTCCAAGATCCGCCATGCAAGCGTGGCGCACGC
CGAGGATGCCTGCCCGAGCATCGTCTTCTTGTCGCAGTGGGGGCTGCCGGTGCTCTCCGGCCCGTCGGTGGGCGGTAACA
GGGGCAAGTACCCCCGTGGGAAGGGCTACTGA------------------------------------------------
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>chr5B_1_TraesCS5B01G187600
AGGATTAAACTGTCCTTCGTTAAATGCATCACATGACAGAACCATACGCCAGCTGTTTA-CACGCAGATGCACGA---CT
TTGGATTCATGATGTGAATTTTGTGTTAAGAGTTGCATGTGTTGTGGTGTCCATGCATTTGCTTTACTGGTTCTTTTATT
GTCCTTTAGGTACCATGCAATCGGACCTGCTTGCTGAAGTTACTGATGGTTCATCCAATGTTAGGGAGGTTTGGAAATTC
TCATTCAAGTAGACTAGCATGGCCTCTGTGATTGTTGTATCAGATACAA-ACGTGTACCGGGCTCCATATTGGTAGAGTG
CGAGCCTTGGTTTAGCCGTTTCATGGTGTTTTAATGCACTGTTAGTTTCAGGTTGATTGTTCATGAGCTCTTGAGAAGTC
ATACAAGTACTTGAGTCCTATCTCTGAATTAC-GATTCTTAAAACTGGTGTACCCTTTCCTCTGAGATGTGAATTCTCCA
TGATG-CCCGCTTGTACCATCTCACAACTTTGACAAAAGTAGCACTTTTTATGGCCCATGGTAGCAAAGATTCTTGGGAA
TTCCAGTGGCAGACAGAACTGATTGAGTAGCGATAGCAACTGACAAGTCATCAAAAAGAGTAACAAGAAACAAAATCTGT
GCTCCCACACTTTACCTCCTTTGTCCGGATGCCATGATACACACCAT----GCTTTCCTGGCAACCAG--GAAATACTCC
AACGTACTCCCACAAGATAATTTTGGGAGAGGTGTGAGTGAGGAA---GGGACGTGGATGTGAGAGGGTGGCTAGGCCCA
TGTGGCACAAGGAATCAAACATTAGGGCGACCTTTGTCCTCTTGTT-CATGTGTCAATGTTTCTAATTATCGGCGCCGTA
CCACTTTGGTCGGGGTCACTCCATGTGCAAGCTACTGCTGTGTTGTCCGTCCTCAAGATGATCTGCATCTTCCTTCCTTG
TAGAGTCTACTATATCTTGGCCTTGCAGGTTGCAGCCTTTCCCCTTGAGCTGCAATGATGGGGCTGCAGGACACGGGCAG
CAGCCGGAGGAGCAGCTTCTTCCAGTACCAGAGGCTGGAATGCCGGGACGACGGGGCCACCCCGCGGCCCAGGCAGCGGC
GGTGGCTGCCGTCTCTGAAC---GGCAAGGCGGCCTGCTCCTGCTTCTTCCATCTCAAGAAGCTCAGGTGGAGCAGGATC
ACTTCGGTCCTCCTGCCAAGGAAGGTCTCCGAGC---------CCTCCTCCAAGATCCGCCATGCAAGCGTGGCGCACGC
CGAGGATGCCTGCCCGAGCATCGTCTTCTTGTCGCAGTGGGGGCTGCCGGTGCTCTCCGGCCCGTCGGTGGGCGGTAACA
GGGGCAAGTACCCCCGTGGGAAGGGCTACTGAGAGGCAGCA-----GGCTTCTGCACATTTTTCAGGTGTCGTCTCTGTT
CCCAACGATATAGTATATGCGTGTGTATGGTGTGGTATATATCTAGGTATATATATCTAGCTGATCCTGTAAATCGAGTT
GTGTTTGTTGCTCTCTGCCGGGAAGGATCTGAGTCTGAGATCGGGTGTGCCCTGCTGATCGATCGTGCGCAGATCCTGTG
CGAAAAAATGTAGGTCGATTT-AAGTTGATGTCAGGCAGAAGAACTACAGGCAAGACTCACTCACAGCGGT-CCGTGTGA
ATTGTGTTGTGAAGATTGTCCTTGTCCCATGAACCGGTTTACA-TTCTGCAACGGGGATTAGA--------CAGATAGGC
ACCGTCTGCAACGCATGAACCTTTGTAAGTTTGTACGCCGTGGGAAACGAACTGATTTTCGTGAAATTCCTT--GGCTC-
CAACAAAGAAGCTCGAAATGT-GTGAAAAGAGTGGCACCAATGGAATGTTGTGCTTCGCAGTTTGCTTACACTGCGGCTC
TACTGCTGTTGGCCTAGGAGCGAGAAACAGTGTCCTGATTTGTGCGGCCTCTTCAGCCGTCAACTAGATGGTGG---GCG
GTCTCCTTTCCTCCACGACACCACACCTTCCCCGTTCTTTTCTCTCGAGGCGCACACGCTCTTAGGCCTTGTACAAAGGG
AGGTGCTTCGAAAAATAAACCGAGTTTTTCTGAAGCAGCGATGCCTATTTCTACAGGAGAGACGCTTAGTTAAGCATCTA
TCCTGTACAAATAAACACCGGTGCTTAGGAAAGCCTGGTTTATTTCTCTAAGCACCTTGCATCGTACAATGCCTTAAAAA
GC----------------------------------------------------TACTGTGCTAGTACTATGGATACAAC
A----------ACGTAAAAAAAAAGTACCATCAATACAACTGATGTCTTGTCTCGCTGCATTTCGGGTGCTCTTGGAACA
TACTAAGGCCATCTTCGACGCTGAGCGCTTGTTTAGGCGCTTGAGCAATAAAGGAAATAGAATTTTCCCTTGTTTAG
>chr5D_1
AGGATTAAACTATCCTTCGTTAAATGCATCACATGACAAAACCATAGGCCAGCTGTTTAACACTCAGATGCACGA---CT
TTGGATTCATGATTTGAATTTGGTGTTAAGAGTTGCATGTGTTGTGGTGTCCATGCATTGGCTTTACTGGTTCTTTTCTT
GTCCTTTAGGTGCGATGCAGTCGGACCTGCTTGCTGAAGTTACTGACGGATCATCCAATGTTAGGGAGGTTTGGAAATTC
TCATTCAAGTAGACTAGCATGGCCTCTGTGGTTGTTGTATCAGATACAAG-CGTGTACTGGGCTCCATAGTGGTAGAGTG
TGAGCCTTGGTTTAGCGGTATCATGGTGTTTTAATGCACTGTTAGTTTCAAGTTGATTGTCCATGAGCTCTTGAGAAGTC
ATACAAGTACTTGAGTCCTATCTCTGAATTAC-GACTCTTAAAACCGGTGTACCCTTTCCTCTGAGATGTGAATTCTCCA
TGATG-CCCGCTTGTACCATCTCACAACTTTGACAAAAGCAGCACTTTCTATTGCCCATGGTAGCAAAGATTCTTGGGAA
TTCCAGTGGCAGACAGAACTGATTGAGTAGCGATAGCAACTGACAAGTCATCAAAAAGAGTAACAAGAAACAAAATTTGT
GCCCCCATACTTTACCTCCTTTGTCCAGATGCCATGATACACTCCAT----GCTTTCCTGGCAACCAG--GAAACTCTCC
AACGTACCCCCACAAGATAATTTTGGGAGAGGTGCGAGTGAGGAA---GGGACATGGATGTGAGAGGGTGGCTAGGCCCA
TGTGGCACAAGGAATCAAACATTAGGGCGACCTTTGTCCTCTTGTT-CATGTGTCAATGTTTCTAATTATCGGCGCCGTA
CCACTTTGGTCGGGGTCACTCCATGTGCAAGCTACTGCTGTGTTGTCCGTCGTCAAGATGATCTGCATCTTCCTTCCTTG
TAGAGTCTACTATATCTTGGCCTTGCAGGTTGCAGCCTTTCCCCTTGAGCTGCAATGATGGGGCTGCAGGACACGGGCAG
CAGCCGGAGGGGCAGCTTCTTCCAGTACCAGAGGCTGGAATGCCGGGACGACGGGGCCACCCCGCGGCCCAGGCAGCGGC
GGTGGCTGCCCTCTCTGAAC---GGTAAGGCGGCGTGCTCCTGTTTCTTCCATCTCAAGAAGCTCAGGTGGAGCAGGATC
AGTTCGGTCCTCCTGCCAAGGAAGGTCTCCGACCCCTCCTCCTCCTCCTCCAAGATCCGCCATGCAAGCGTGGCGCACGC
CGAGGATGCCTGCCCGAGCATCGTCTTCTTGTCGCAGTGGGGGCTGCCGGTGCTCTCCGGCCCGTCGGTGGCTGGTAACA
GGGGCAAGCATCCCCGTGGGAAGGGCTACTGAGAGGCAGCA-----GGCTTCTGCACATTTTTCAGGTGTCGTCTCTGTT
CCTAGCGA-----TATATGCGTGTGTATGATGTGGTATATGGTAG----TATATATCTAGTTGATCCTGTAAATCGAATT
GTGTTCGTTGCTCTGTGCCGGGATGGATCTGAG------AT-----------TGCTGATCGATCGTGCCCGGATCTTGTG
CGAAAAAATGTAGGCCGATTTTAAGTTGATGCCGGGCAGAAAAACT----GCAAGATTCACTCACAGCTGTGCCGTGTGA
GTTGTGATGTGAAGATCGCCCTTCTCCCATGAACCACCTTACG-TTCTGAAACGGGGGTTAGATTG------AGATAGGC
AGCGTCTGCAACGCATGAACCTTTGCATGTT-----GCCGTGGAAAACGAACTGATTTTCGTGAAATTCCTTTTGGCTCC
AAAACAAGAAGCTCGAAATGGGGTGAAAAGAATGGCACCAACGGAATGCTGTGCTTTGCAGCTTGCTTCCACGGCGGCTC
TACTGCTGTTGGCCTAGGAGCGAGAAACGGTGTCCTGATTTGTGCGAC--CTTGAGCCGTCAACTAGATGATAA---ACG
GTCTCCTTTCCTCCACGACACCACACCTCCCCCGTTCTTTTCTCTCGATGAGACGCACAACTGGTGCTCGTGCT------
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------------------------------------------------------------------------CTTAAAAA
GCTACTTCCTCCGTCCCACAATATAAGAGAATACCCTCCCATAATATAAGGGAGTACTGTACTAGTACTATGGATACAAC
CACATACAACCACGTCAAAAAAGAGTACTATCGATACAACGGATGTCTCGTTTCGCTGCATTTCGGGTGCTCTTGGAACA
TACCAAGGTCATCTTCGACGTTGGGCGCTTGTTTAGGCGCTTGAGCAATAAACGGAATATAATTTTCACTTGTT---
>chr5A_2
-GGATTAAACTATCCTTCGTTAAATGCATCACATGACGAAACCATAGGCCAGCTGTTAA-CACTCAGATGCATGACTTCT
TTGGATTCATGATGTGAATTTTGTGTTAAGAGTTGCATGTGTTGTGGTGTCCATGCATTTGC-TTACTAGTTCCTTTCTT
GTCCTTTAGGTGCCATGCAGTCGGACCTGCTTGCTGAAGTTACTGACGGATCATCCAATGTTAGGGAGGTTTGGAAATTC
TCATTCAAGTAGACAAGCATGGCCTCTGTGATTGCTGTATCAGATACAAAACGTGTACCGGGCTCCATATTGGTAGAGTG
TGAGCCTTGGTTTAGCCGTATCATGGTGTTTTAATGCACTGTTAGTTCCAAGTTGATTGTTCATGAACTCTTGAGAAGTC
ATACAAGTACTTGAGTCCTATCTCTGAATTACTGACTCTTAAAACCGGTGTACCCTTTCCTCTGAGATGTGAATCCTCCA
TGATGGCCCGCTTGTACCATCTCACAACTTTGACAAAAGCAGCACTTTTTATTGCCCACGGTAGCAAAGATTCTTGGGAA
TTCCAGTGGCAGACAGAGCTGATTGAGTGGCGATAGCAACTGACAAGTCATCAAAAAGAGTAACAAGAAACAAAATTTGT
GCCCCCATACTTTACCTCCTTTGTCCAGACGCCATGATACACACCATGCTCGCTTTCCTGGCAACCAGAGGAAATACTCC
AACGTACCCCCACAAGATAATTTTGGGAGAGGTGTGGGTGAGGAAGAGGGGGCATGGATGTGAGAGGGTGGCTAGGCCCA
TGTGGCACGAGGAATCAAACATTAGGGCGACCTTTGTCCTCTTGTTTCATGTGTCAATGTTTCTAATTATCGGCGCCGTG
CCACTTTGGTCGGGGTCACTCCATGTGCAAGCTACTGCTCTATTGTCCTCCCTCAAGATGATCTGCATCTTCCTTGCTTG
TAGAGTCTACTATATCTTGGCCTTGCAGGTTGCAGCCTTTCCCCTTGAGCTGCAATGATGGGGCTGCAGGACACGGGCAG
CGGCCGGAGGGGCAGCTTCTTCCAGTACCAGCGGCTGGAATGCCGGGACGACGGGGCCACCCCGCGGCCCAGGCAGCGGC
GGTGGCTGCCGTCTCTGACGACTGGTAAGGCGGCCTGCTCCTGCTTCTTCCATCTCAAGAAGCTCAGGTGGAGCAGGATC
ACTTCGGTCCTCCTGCCGAGGAAGGTCTCCGAGC------CCTCCTCCTCCAAGATCCGCCATGCAAGCGTGGCGCACGC
TGAGGATGCCTGCCCGAGCATCGTCTTCCTGTCGCAGTGGGGGCTGCCGGTGCTCTCTGGCCCGTCGGTGGCCGGTAACA
GGGGCAAGCACTCCCGTGGGAAGGGCTACTGAGAGGCAGCAGCAGAGGCTTCTGCACATTTTCCAGGTGTCGTCTCTGTT
CCTAGCGAC-----ATATGCGTGTGTATGATGTGGTAT--------------ATATCTAGTTGATCCTGTAAATCGGATT
GTGTTCGTTGCTCTGTGCCGGGGTAGATCTGGG------ATCGGGTGTACCCTGCTGATCGATCGTGT-------CTGTG
CGAAAAAATGTAGGTCGATTTTAAGTTGATGCCAGGCATAAG---TACAAGCAAGACTCACTCACAGCTGTGTC------
-------------GATTGCTCTTCTCCCATGAGCCACTCTACGTTTCTGAAACGGGGGTTAGATTGATAGCCAGATAGGC
ACCGCCTGCAACGCATGAACCTTTGCATGTT-----GCCGTGGAAAGCGAACTGATTTTCGTGAAATTCCTTTTGGCTA-
AAAAAAAGAAGCTCAAAATGGGGTGAAAAGAATGGCACTAATGGAATGCTGTGCTTTGCGGTTTGCTTCCACTGCGGCTC
TACTGCTGTTGGCCTAGGAGCGAGAAACGGTGTTCTGATTTATGCGAC--CTTGAGCCGTCAACTAGATGATGGACGACG
GTCTCCTTTACTCCACGACACCACACCTCCCCCGTTCTTTTCCCTCGAGACGCACA------------------------
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>SNPs
-----------S--------------------------S-------S----------------S----------------
-----------------------------------------------------------------------------S--
-----------S-------S--------------------------S--S------------------------------
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S------------------S------------------------------S-----------------------------
-----------------------------------S---------S----------------------------------
---------------------------------------S------------S---------------------------
----------------------------------------------------------------------------S---
--S----S------------------S-----------------------------------------------------
-------S---------------------------------------------S--------------------------
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----------S---------------------------------------------------------------------
-------------------------S------------------------------------------------------
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-----------------------------------------------------------------------S--------
--------S-----------------------------------------------------------------------
--S-S---SSSSS----------------S----------SSSSSSSSS-----------S----------------S--
-----S--------S--------S---------SSSSSS---------S-------------------S-S---------
-------------------------------S-----------------S------------------S-----------
S-----S-----------S----S-----------SS-----S------S-------S----------------------
-------------------------S-S---SSSSS-------S------------------------------------
S--S----------------S----------S----------------S-------S-----------S-----------
----------------------------S-----------------S-SS---S----------------S------S--
----------------------------S---------------------------SSSS--SSS--SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
------------------------------------------------------------S-------------------
S--------------S------S-----S---S-------S-------S--S----------------------------
---S----S-----------S--S----------------------------S-S----S-------S------SSS
>forward_774
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----------------------------------GTGTGAGTGAGGAAGGGACG--------------------------
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>reverse_1788
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---------------------------AGTTTGTACGCCGTGGGAAA---------------------------------
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