>input_sequence_82628
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------------------------------------------------------------ATGGCTTCATCGAGCAGGAT
GCTGGTTGTTGTGGTGGTGGCCGCCCTAGTGGCCGTTGCGTGGAGCGCACCGCCGCCGGTGAGCATCACGGTGGAGAAGG
GGTCCGACGCGAAGCATCTGGTGCTGCAGATCAAGTACGACAAGGTCGGCGACAGCATGAAGGAGGTGGAGCTGAAGCAG
AACGAGGACTGGCTGCCCCTGAAGAAGGGCTACAGCGGCGCGTGGGAGATCAAGAGCGACACGCCCCTCAAGGGCCCCTT
CAGCTTCCGCTACGAGACCCAGAAGGGCCAGCGCAACGTCTTCGATGACATCGTCCCCACAGATTTCAAGTGCGGCACCA
CCTACAAGCCAGAGGCG---TACTGA------------------------------------------------------
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>chr5B_1_TraesCS5B01G002800
GCCGGCACCCGTGAGGCCGAGACGACCGAGGCGTGGTCGGAGACGACGATGACAGGGTGCTGGTCGCGGTGGTGGACGAC
CTGCCGCTGCCGCCGCTGTGGTGGCGCAGCTCCTCCAGGTACCCCACCACCAGGTCCAGCCTGTCCACCCGCGCCATCAT
GCTCCCAGACGCCGGCAGCTGG------TGCTGGTGCTGCCCGCCGTGGCTGTGGCTCACCGCCGATGAAGCCATAATAA
CTGTTCTTCTATCTCCTGCCCTATGTGTGTGTGCGCGCGTGTCTGGAATTATCTCGATCTTATCAAGTTGC-------AA
GGGAGT------------GATCATGTGACACATGCATGGAGCAGGTATAAATAAGTAGCAGATGGAGCC-----------
------GGACATGGAATGGAGAGGCAGCTAGCTAGCTGCACGTGTCTGTCACGGAGGCTTCGACGTGGCGC--------A
TGCAAAGGCGGTGCATGCGTGCGTGAGGTGGACGGCTCTCCGTGCTCGCGTACGTGTCCTGCTTTGCAACCGCGAACGAA
ATACTGCACCACGTGGCTTCTCGCAACCAACAGCCGCGCGCCACGTGCACGTGTGGCCAGGCAACGAGCCCCCATCTACG
CCGTCTGGAAGACACCTCTACTCGCTAGCACTAGCTAGG------------GCACGACCAAAAGAATTTCTCGCATCGAC
GACGAAG----------------CGAAGCCATCTCGATCGTCCGTCCGAGGAAAGCTCATTATTTTATGTTTGTTGCTGC
TGCTATGTGTATAATTAG-----G-----CAGGCATGCGACCGGCCAACGCTCCGGCGATGTCGGTGGTTTATGCGGCCA
ACCGGCCATGACCGAGAAGACAGAGCTGGTCCGTTCATGCGTGCGCGGCTCTCCGTCACCGAGGGCCGCGAGCGACATGG
CCGGAGCGCCGCGCGTCCGCGCATAAATATGGTGCCACACCACACAACCCATCACAAGCTCACAATCCCACAGCAGCAGA
ACCACACACACTCACACACACACACACACAAGAAT------------CAACCGACCGGCGATGGCTTCATCGAGCAGGAT
GCTGGTTGTTGTGGTGGTGGCCGCCCTAGTGGCCGTTGCGTGGAGCGCACCGCCGCCGGTGAGCATCACGGTGGAGAAGG
GGTCCGACGCGAAGCATCTGGTGCTGCAGATCAAGTACGACAAGGTCGGCGACAGCATGAAGGAGGTGGAGCTGAAGCAG
AACGAGGACTGGCTGCCCCTGAAGAAGGGCTACAGCGGCGCGTGGGAGATCAAGAGCGACACGCCCCTCAAGGGCCCCTT
CAGCTTCCGCTACGAGACCCAGAAGGGCCAGCGCAACGTCTTCGATGACATCGTCCCCACAGATTTCAAGTGCGGCACCA
CCTACAAGCCAGAGGCG---TACTGAGGTTCATCCATGCATTG-GTTCCGCCATTATCTACCTTTCTTTTTGATAAATCC
GCCATTACCGACCTCGTAATTAATAATGTGCCACAAGGCGCACAGATGCTAATAAGTTAAGTAGTATTACCTCCGTTCTG
AATTAGTTG--TAATTTTGGAT-----GAAGGGAGTACTAGGAGAAGCAACGGGCGGCGGTCGGATGTATTTGCTCTCCA
GTGCACGTGTTGTCTCGATTGACGACTTG-TTTTCTTCTATGTATCGAATATGTGGAATATTATTTGTAA----------
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----------------------------------------------------------TATACTTGAAACCTAGATTTCA
TTTCTATATAATCTCTAAGTTTGCTAGTAATATTGTTTATGGTACTCGCTATAAGAAATATAACATATTTGTTAAGTAGT
CGGATTATGCTCTACCCCACGATTGCCTTGGTGCGCGTTGACTACAACCATATGTAACCAACAAAAAAAAAGAGAACACA
ACAG---CCATATGTTGTCCCTTTGTCTTGATAATATGTCCTTGCAATGACGGGCACCCTATTTTTGACGCCCC--TCCC
CATATATGGGGTGCTCACAAGGAGCTCTCAATCTCCCATGTAGTCACTCATGATATGAATGGAGACCAGTGTAAGGCGTA
TTCCGACAAGGAGATCAGAGAAGGGGCCCATGAAGGCGCCAGTACCAAATGGTTCCCCGACACCTTTCTAATAGACCCAT
CCAAAATGTTTCGAAAGTGA-AATTTGTGAGGTTGCTAGCGGTTTCGAGGAAGGAGATATGATTTGGGAGGGGTT-GTTC
GACTCCACCATCGTAATGATATCAATGGCGAACCACCCTAAACAATAAATAAAAAAACACATGCATGCACACATTCACTG
TGGTGGTGCAGCATCTCAATGGGATTTTGCCTATATGAAGAGC------------------------------------A
CATCATCACATTAATTTTTATTTTCCGACTTAGAATGATTGGTCTCACAAACCATTAATCCGATTAGTGACCCATCTTCA
CCAGTGGCTTCACCTGGACAAGGGTT------------------------------------------------------
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>chr5D_1
GCCGGCACCCATGAGGCCGGGAAGACCTAGGCGTGGTCGGGGATGACGATGACAGCGTGCTGGTCGCGGTGGTGGACGAC
CTGCCGCTGCCGCCGCTGTGGTGGCGCATCTCCTCCAGGTACCCCACCACCAGGTCCAGCCGGTCCACCCGCGCCATCAT
GCTCCCTGCCGCCGCCGGCAGGTGC---TGCTGGTGCTGCCCGCCGTGGCTGTGGCTCACCGCCGATGAAGCC---ATAA
CTATTCTTCTATCTCCGGCCCTATGTGTG----CGCGTGTGTCTGGAAGTATCTCGATCTTATCAAGTTGC-------AA
GAGAATTGCTCTGCTATCGATCATGTGACACATGCACGGAGCAGGTATAAATAAGTAGCAGATGGAGCCGCCATGGCCGA
TCGGATGGACATGGAATGGAGG--------------TGCACGTGTCTGTCACGGAGGTGGCAACGTGGCGCATGGATGCA
TGCAACGGCGGTGCATGCATGCGTGAGGTGGACGGCTCTCCGTGCTCGCGTACGTGTCCTGCTTTGCAGCCGCCAACGAG
ATACTGCTCCACGTTCCATCTCGCAGCCAACAGCCTCGCGCCACGTGCACGTGTAGCCAGGCCACGAGCCCCCATCTACT
CCGTCTGGAAGACACCTCTACTCGCTAGCACG----AGG------------ACACGGCCAAAATAAAATTCTCGCCGGAG
GTGAAAAGCTCCACCGCCGAGGACGAAGCCATCTCGAT----CGTCCGAGG-AAGCTTATTATTTTATGTTTGTTGCTGC
TA-TGTGTGTATAATTAGACATGGCATGACAGGCATGCGACCGGCCAACGGTCCGGCGATGTCGGTGGTTTATGCGGCCA
CCCGGCCATATGATCG-AGACCGAGCTGGTCCGTTCATGCATACGCGGCTCTCCGTCACCGAGGGCCGCGAGCGACATCG
CCGGAGCGCCGCGCGTCCGCGCATAAATATGGTACCACAC------------CACAAGCTCACAATCCCACAGCAGCAGA
ACCGCACACACT----CACACCCACACACAAGAATCAATCAACCAACCAACCGACCGGAGATGGCTTCATCGAGCAGGAT
GCTGGTGGCGGCGGTGATGGCCGCCCTGGTGGCCGTGGCGTGGTGCGCGCCGCCGCCGGTGAGCTTCACGGTGGAGAAGG
GGTCCGACAAGACGCATCTGGCGCTGCAGATCAAGTACGACAAGGCCGGCGACAGCATGAAGGAGGTGGAGCTGAAGCAG
AAAGAGGACTGGCTGCCCCTGAAGAAGGGCTACAGCGGCGCGTGGGAGATCAAGAGCGACAAGCCCCTCGAGGGCCCCTA
CAGCTTCCGCTATGAGACCGAGAAGGGCCAGCGCAACGTCTTCGACGACGTCATCCCCACAGATTTCAAGTGCGGCTCCA
CCTACAAGCCAGAGGCGACCTACTGAGATTCACCCATGCATCG-GTTCCGCCATCAT-----------------------
--------CGACCTGGCAACTAAGATCGTGTCGTAAGACGCACGGATACTAATAAGTTAGATAATATTACCTTCGTCCCG
AATCAATTGTCTAATTCGGGACGAAGGGAAGGGAGTAGTAGGAGAAGCAACGGCCGGCGGTCGGTTGTATTTGCTCTCCC
GTACGCCCGTTGTCTTGATTGACCATTTCTTTTTTTTCTTTGTACCGAATCTTTTCACTATTATTTGTAATATACTTGAA
ATCTAGATTTCATTTATATATAATCTCTATGTTTGCTAGTAATATTGTTTATGGTACTCGCTATAGAAAATTTAGCATAT
TTGTTGAGTAGTTGAGATTATGCCCTATCCCACGATCGCCTTGGTGCGCGTTGAAAACAACCATATTATGTAACCACGCA
AACGAAAAAAAAGACAACAACCATATGTAGTCCCTTCGTCTTGATAACTTGTCCTTGTATGACGGCACCATATTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATATGAATGGAGACCAGTGTAAGGCGTATTCCAA
CAAGGAGATCAGAGAAGGGGCACATGAAGGCGCTAGGACCTAATGGTTCCCCGACGCCTTTCTAATGGACCCATCAGAAA
CGCTTTTAAAGAAGGAATTTGTGCAGTTGTTAGCGGTTTCTTGGAAGGAGATATGATTTTGGAGGAGTTGCTCGACTCCA
CCATCGTTACGATCTCAAAGTAAACCACCCAAAACAATAAAGAAAAACACACATGTATCAGACTGACATCATCACACTAA
TTGTTATTTTCAAAATTCGAATGATTTGTCTCATAAACCAGTCATCCAATTAGTGACCCGTCTTCACCCGTGGGTTCACC
TTCGTCCTGAATCCTGAATCAATTGTCTAATTCGGGATGAAGGGAGTAGTAGGAGAAGCAACAGCCGGCGGTCAGATGTA
TTTTCTCTCCCGTGCACCCGTTGTCTCGATTGACAATTTCTTTTTTTCTTCTTTGTAATATACTTGAAATCTAGATTTCA
TTTCTATATAATCTCTAAGTTTGCTAGTATTATTGTTTATGGTACTCGCTATAAGAAATCTAGCATATTTGTTATGTAGT
AGGATTTCGCTCTACCCCACGATCACCTCGGTGCGCGTTGACAACAACCATATGTAACCACGC-AAAAAAAGAGAAGAAG
ACAACGACCATATGTAGTTCCTTTGTCTTGATAACTTGTCCTTGCA-TGACAGGCACCCTATTTTTAACGCCCCCCTCCC
CAGATATGCTGTGATCACAAGGAGCTCTCACTCTCCCATGTAGTCATTGGTGATATGAATGGA-ACCAGTGTAAGGCGTA
TTCG-ACGTGGAGATCAGAGAAGGGGCCCATGAAGGCGCTAGGGCCAAATGTTTGCTCGACGCCTTTCTAATAGACCCAT
CAGAAACGTTTTTAAAGTGGTAATTTGTGTGGTTGCTAGCGGTTTCTTCGAAGGAGATATGATTTTGGAGGGGTTTGTTC
GACTCCACCATCATAACGATCTCAAAGGCGAACCAC-CTAAACAATAAAGAAAAACACACATGTATGCACACATTCACTC
CGGTGGTGCGGCATCCCAATGGGATTTTTCCTATATGGAGAACACATGCTTGTATGTAAGAATCTTACATATCAGACTGA
CATCATCACATTAAATTTTATTTCGA-ACTTAGAATGAGTTGTCTCATAAACCATTAATCCGATTAGTGACCCATCTTCA
CCAGTAGGTTCACCTCGGCAAGGGCTTTGAAACGAGATGACATGTCCGTGGTGTGGTGCGTGCCGCCGCCGATGAGCTTC
ACAGTGGAGAACGGCTCCGGCGAGAAGAAGCCGGCGTTGCAGATCAAGTACGACAAGGATGGCGACAACATGGAGGAGGT
GGAGCTGAAGCAGAACGAGGACTGGACAAGGGTGCTGGCGGCGTGTGGGAGATCAAGGGTGACAAGCCTCCCAAGGGCCC
CTACAGCTTCCGCGGGAGACCGAGAAGGGCATGCGCAACATCTTCGACGATGTCGTCCC
>chr5A_2
-CCGGCACCCGTGAGGTCG---AGCCCGAGGCGTGGTCGGGGACGACGATGACAAGGTGCTTGTGGCGGTGGTGGAAGAC
CTGCCGCTGCCGCT------GTGGCGCAGCTCCTCCAAGTACCCCACCACCAGGTCCAGCCGGTCCACCCGCGCCATCAT
GCTCCCAGCCGCCGGCAGCTGGTGCTGGTGCTGGTGCTGCCCGCCGTGGCTGTGGCTCACCGCCGATGAAGCC---ATAA
CTGTTCTTCTGTCTCCGGCCCTATGTGTGTGCGTGCGCGTGTCTGGAAGTATCTCGATCTTATCAAGTTGGAACTTGGAA
GAGAATTGATCTGCTATCGATCATGTGACACATGCATGGAGCAGGTATAAATAAGTAGCA----GAGCCGCCATGGCCGA
TCGGATGGACATGGAATGGAGAGGCAGCTAGCTAGCTGCACGTGTCTGTCACGGAGGTGGCGACGTGGCGCATGTATGCA
TGCAACGGCGGTGCGTGCATGCCTGAG--------------GTGCTCGCGTACGTGTCCTGCTTCGCAGCCGCCAACGAA
ATGCTACTCCACGTTCCTTCTCGCAACCAACAGCCACGCGCCACGTGCACGTGTAGCCAGGCCACGAGCCCCCATCTACT
CCGTCTGGAAGACGCCTCTACTCGACGACGAAAGAATTATTTTATGTTTGTACACGACCAAAAGAATTTCTCACATCGAC
GACGAAG----------------CCG-GCCATCTCGATCGTCCGTCCGAGG-AAGCTCATTATTTTATGTTTGTTGCTGC
TA-TATGTGTATAATTAGACATGG-----CAGGCATGCGACCGGCCAACGCTCCGGCGATGTCGGTGGTTTATGCGGCCA
ACCGGCCATGATCGAGAAGGCTGAGCTGGTCCGTTCATGCATACGCGGCTCTCCGTCACTGAGGGCCGCGAGCGACATCG
CCGGAGCGCCGCGCGTCCGCGCATAAATATGGTACCACACCACACAAGCCATCACAAGCTCACAATCCCACAGCAGCAGA
ACCACACACAC------------------AAGAATCAATCAACCAACCAACCGACGGGAGATGGCTTCATCGAGCAGGAT
GCTGGTGGCGGCGGCGGTGGCCGCCCTGGTGGCCGTGGCGTGGTGCGCGCCGCCGCCGGTGAGCTTCACGGTGGAGAAGG
GGTCCGACAAGACGCATCTGGCGCTGCAGATCAAGTACGACAAGGCCGGCGACAGCATGAAGGAGGTGGAGCTGAAGCAG
AAGGAGGACTGGCTGCCCCTGAAGAAGGGCTACAGCGGCGCGTGGGAGATCAAGAGCGACAAGCCCCTCGAGGGCCCCTA
CAGCTTCCGCTACGAGACCGAGAAGGGCCAGCGCAACGTCTTCGACGACGTCATCCCCACAGATTTCAAGTGCGGCTCCA
CCTACAAGCCAGAGGCGACCTACTGAGATTCACCCATGCAT---------------------------------------
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>chr5A_988
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-----------------------------------------------CAACCAAGCGGCGATGACTTCATCGAGCAGGAT
GCTAGTAGCGGTGGTGGTGGCGGCCCTGGTGGCCGTGGCGTGGTGCGCGCCGCCGCCGGTGTGCTTCACGATGGAGAAGG
GGTCGGACCCGAAGCATTTGGTGCTGCAGATCAAGTACGACAAGGATGGCGACAGCATGAAGGAGGTGGAGCTGAAGCAG
AAGGAGGACTGGCTGCCCCTGAAAAAGGGCTACAGCGGCGCGTGGGAGATCAAGAGCGACAAGTCCCTCGAGGGCCCCTA
CAGCTTCCGCTACGAGACCCAGAAGGGCCAGCGCAACGTCTTCGACGATGTTGTCCCGACAGATTTCAAGATCGGCACCA
CCTACAAGCCAGAGGCGACCTACTGAGATTCACCCATGCATTTTGTTCCACCATTAT-----------------------
--------CGACCTCACAGCTAAAATCGTGCCATAAGGCGCATGGATACTAATAAGTCAAATAATATTACCTTCAGCCTA
AATTAATTGTCTAATTCAGGAC-----GAAGGGAGTAGTAGGAGAAGCAATGGCTGGTGGTCAGATGTATTTACTCTCCC
GTGCACCCGTTGTCTCCATTGACCATTTCTTTT-TTTCTTTGTACCGAATCTATTCAATATCATTTGCAATATACTTT--
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------------------------------------------------------------------AAATCAAGATTTCA
TTTCTATATAATATCTAAGTTTGCTAGTAATAT--------------------------------TATTTGTTATGTAGT
AGGATTACATTCTACCCCATGAACGCCTCGGTGCGCGTTGACAACGACCATATGTAACCATGC-AAGAAAAGAGAAGAAT
GCAATAACCATATGCAGTCCCTTTGTCTTGATAACTTGCCCTTGCA-TGATAGGCACCCTATTTTTAACG-CCCCCTCCC
CAGGTATGCGGTGATAACAAGGAGCTTTCACTCTCCCATGTAGTCACTAGTGATATGAATGGAGACCAGTGTAAGGCGTA
TTCCAACGAGAAGATTAGAGAAGGGGCCCATGAAGACGCTAGGGCCAAATGTTTGCTCGACGCCTTTCTAATAGACCCAT
CGAAAACGTTTTTAAAGTGGGAATTTGTGGGGTTGCTAGCAGTTTCTTTGAAGGAGATATGATTTTGGAGGGGTT-GTTC
GACTC----------------------GCGAACCACCGTAAACAATAAAGAAAAACACACATGTATGCACACATTCACTC
CGGTGGTGCGGCATCCCAATGGGATTTTGCCTATATGGAGAG--------------------------------------
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>SNPs
-------------------S--S-----------------S---------------------------------------
-------------------------------------------------------------S------------------
--------S----------------------------------------------------------------SSS----
----------------S--------------S----------------S-------------------------------
-S--S---------------------------------------------------------------------------
---------------------------------------------------------SSS--------------------
-----S------------S-------------------------------------------------S----S------
-------S------SS-------------------S------------------S-------S----------------S
-------------------------------S--SS---------------S--------------------S-------
---------------------------------------------------S----------------------------
-SS-----------------------------------------------------------------------------
-----------S---------S------------------S-S-----------------------------------S-
---------------------------------S-------------S--------------------------------
------------SSSS-----S----------------------------------------------------------
------S-SS-----------------S--------S------S----S---------------S---------------
--------S------------------------------------S----------------------------------
--S----------------------------------------------------------S-------S---------S
---------------------------------------------S---S------------------------------
---------------------------S----S------------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS--------S--S---S-SS------S---------S---S------------S--S--------S---S---
-----S----------SS---S---------------S---------------S-------------------------S
------SS---------------S-S--S-----S----S----S-----S-S-SS------------------------
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---------------------------------------------------------------------S----------
-----------------------------------------------------------S--S-----------S-----
S------S---------------S----S-------------S-----------------SSSS------------S-SS
---S-----------S------------------SS----------S----S--------------S-------------
--S-----S----S----------------S-----------------SS------------------------------
----S--S-------------------------------S--SS-------S--S-S----S------------------
-S----S----SS------S---------S----------------SSS----------------S--------------
------------S---S---S----S-----------------------S-----S-------S---------------S
S--------S-----S---------------------S------------------------------------------
--------------S--------SSSS-----------S-S------S--------------------------------
-----S-S-------S-S------S-------------------------------------------------------
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>forward_576
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----------------------------------------------------------------------------CGAA
ATACTGCACCACGTGG----------------------------------------------------------------
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>reverse_1680
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-------------------------------------------------------------------------------A
GTGCACGTGTTGTCTCGAT-------------------------------------------------------------
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