>input_sequence_82626
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--------------------------------------------------------------------ATGAGGTCACCG
GCTGCCATCCTCTTCCTCCTCGCAGTCCTCGTCGCCGGAGCGGGCGCGGCGTTCGCCTTTGGATCCGAGAAGCCGCCGAC
CGTAGCCGTGGGCGTCGTCATGCCGGCCGACCCCCGCGGGCCGATGCTCGCGCGCTTCGCGGTGCTGGTGTACGGCCTGA
GCCGGAACGCCAAGCTGACGTACGCCGGCGTCTCCGGCGTTGACCAGCGCCCTGACAAGGCCGGCATCAGGTACCAGATG
GTGGTCACCGCCGTCGAGGACGGCGGCGCCACAGCCAAGTACCGGGCGGTGATCTGGGGAGTCCCCGAGACCTCGCGGTG
GACGCTTCTGCAGTTCAAGCGCGTAAACTGA-------------------------------------------------
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>chr4D_1_TraesCS4D01G287900
CGCGCGCCTCTGAAGCTCCTCATCCGGCCCGTCCAGTTCGTGGACGGTGTCGGCAACTGCGGTGGCGTGGATACCGCCGA
CGGTGTCATGAGCGGCTTGGTTGTCCCTGAACTTCGTAAGGCGTGAGGTGTGGTCGGCGAAGTGGGCCCATGCTACCAAA
CGCTGTCGTACTGCTGGTGCCACTCGCCGGCGCAGCGCCGCGTACTGCCGCGGCTGGCGATGCTCCCCGCCACAAGCAGC
CGCTGCCCTCGCTGGCCATCACCATGTCTGGG------------------------------------------------
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------------------------------------------------------GTCGTCCGGTGGCTGCCATCTTGTGC
TGCTCCCCTCTGCTAAAGCTAGTCGTATTGAGATGGGAACTAGGAAAAATGGCTATGATGTGTTGACCCACACCACAGTG
AGAGAAGGGAGTACCCGGCCAGGATTATGCTTTTCCCGGTCTGCCAAACATATCTAAGGTTCGGATAAACCGAGATCAGA
AAGGTTAGGGCACAGATTTCAGGAATTTGGAGGTGAGGGTTCATTTGCGTCGACCTCTACAACCTTAAAGTTCATTTCAG
ACTTCACTCTCAACTATGAGGTTCGGAGTATGATTAAGTTATAGGCTGCGTGTGTGCGTTTATAAGGATGAGTGTGCATG
TGTCCTTACTATGTTTCTCAAGAAATAAAAAGAACTGTGTACAGTAGTATAAGAGAATTATTTGATCACCAGTATTTACA
CGACAAAAAAC-TGCATCTTTTGATGAACAAAGGCGTACGAAACACTCGTTGCTACGCTGTTTAAATCTGACGGAACCGC
GTACGCACTTTTGTTTCCTGAGATGTTAATTAAAGTTACCACTCCGCAAACCTTCC-TTCTTCAGTTTCACACTCAAGGA
GCTGAATAAATAGCCATCTAACCTGGCCTATCAATTCACCACAACC--ATACACGCTCAACAAAAGCTCGACACTAAGCT
TAGCTAGCTAGCCTTACTAGGCAGCTAGCAACACCGTAGCTAGCTAGCCCG--ACAGGCACACGCACAATGAGGTCACCG
GCTGCCATCCTCTTCCTCCTCGCAGTCCTCGTCGCCGGAGCGGGCGCGGCGTTCGCCTTTGGATCCGAGAAGCCGCCGAC
CGTAGCCGTGGGCGTCGTCATGCCGGCCGACCCCCGCGGGCCGATGCTCGCGCGCTTCGCGGTGCTGGTGTACGGCCTGA
GCCGGAACGCCAAGCTGACGTACGCCGGCGTCTCCGGCGTTGACCAGCGCCCTGACAAGGCCGGCATCAGGTACCAGATG
GTGGTCACCGCCGTCGAGGACGGCGGCGCCACAGCCAAGTACCGGGCGGTGATCTGGGGAGTCCCCGAGACCTCGCGGTG
GACGCTTCTGCAGTTCAAGCGCGTAAACTGATCGGGCCGGGGGCGGTGCGTGTACACTCGTGCACGTAACAGGACGGGGG
-TGGTCATGCATGCGTGTGCACGAGCGCATACTAACAGTATATGCATCTTGCCACTATATATAAGCATACTACTGTACAA
CTACATCATGCAACAAGCAAGTGAATAAATGGCGTCGGTCTACGTTGCAGAAGAAAACTGATGATTTATAAGTGTGT---
--ATGTGTCAATTCAGGAATGTTGATGGCAAAGTTTTTGTGTAAGCCTTGAGTAGCTTGAGAATGTG------------T
GTGTATGTTTGATCGTCATGGTGCTTTATCTATAAAACCGGGCGAAAGCCTGTTTCGAGATGTTTAATCATCCAGAAGCA
CTCTTTTGTGTGTATCCATGTGTGTGCATGAGTGTTTTTTTTACGGGTGTGTGCATGAGTGTTGATCATTCGTGTGTGTG
CATG----------------------------------------------------------------------------
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----------------------------------------------------------------AGCGCATAAAGCATTA
TAATATTATATGCATGCATCTTGCCACTAGTATAGGCATGTAGCAGTGTTCAACTAG---TACATGCAATCAAGTGAATG
GACGGTTAGAGTTGGTTGTTGAT-AAAATAACCATCGAATTAGAGTAAAAAAA--TGAACTATAATGGGTCTGGCGATTC
GCGATCGTATAAAGCTCTAACAAGGGACACATGGTAAAACTTTATCCCCTATGTATGTTATCTACCGTTGTATGCATTGG
TTTTGTTTGTGGTTTAGTGTTCATCAACCGATTGTTTATGATGGTGTGTATGTGATTGAGCATGCAGGTGGTCAAGGAGC
CTTTTGCTACACATGGATGGCGGCATAGTTCATAGATAACACCCACTTCCTCGCGTTACGCATGGTTCCAGTGTGCTATG
ACTTTGTTGTTTATGGCATTTTTATATTTTATCATGCATGCAT------------------------------GCGTTTG
TGTTAATTGTGTGCATCTTAGCCACTCATAGATAT----GATGTATGGTCATTATGCTTAATATTCCTTTGATGCTACAT
TATAAGTTAGTAAAACAATTCTTTGCTGA
>chr3B_1
CGCGCGCCTCTGAAGCTCCTCATCCGGCCCGTCCAGTTCGTGGACGGCGTCGACAACTGCGGTGGCGTGGGTACCGCCGG
CGGTGTCATGAGCGGCTTGGTTGTCCCTGAACTTCGTGAGGCGTGAGGCTTGGTCGGCGAAGTGGGCCTAGACCACCAAA
CGCCGTCGTACTGCTAGTGCCACTCGCCGGCACAGCGCCGCGTACTGCCGCGGCTGGAGATGCTCCCCGCCACAAGCAGC
CGCTGCCCTCGCTGGCCAACACCATGTACTGCTGCAGCTGCACGCCGCCGCATACTGCTACTGCTTTGTGCTCTCGCCGC
CAATGCCCACATAGGAAGAGCAAATTCTCACCGTTGTACCTTGTGTTGTGCTCTCGCGCCGCATATTTGCTACTGCTTGT
GCTCATGTCGTCCTTGTTGTGCTATGTGCAAAATAATCAGCATGGGCGCATGGCCCGCCCGTTCTCCAGCACGAGGTTGG
CTCGTACAAGAACGGCGCCATATATATTGCCTGTCTGACTCTACGTCTGGGGTCGTCGTCCGGTGGCTGCCATCTTGTGC
TGCTCTCCTCTGCTCAAGCTAGTCATGGTGAGATGGGAACTAGGAAAAATGGCTATGATGTGTTGACCCACACCACAGTG
AGAAAAGCGAGTACCCGGCCAGGATTATGTTTTTCCCGGTCTACCAAACATATCTAAGGTTCGGATAAACCGGGATGAGA
AAGGTTAGGGTACAGATTTCAGGGATTTGGAGGTGAGGGTTCATTTGCGTCGACCTCTACAACCTTAAGATTCATTTTAG
ACTTCACTC-----------------------------------------------------------------------
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>chr4A_563
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------------------------GGAGTACGATTAAGTTATGAGTTGTGTGTGTACGTTTATAGAGATGAATGTGCATG
CGTCCGTATTGTGTTTCTCGAGAAATAAAAAGAACTTTGTACAGTAGTGTAAGAGAATGATTTGATCACCAGTATTTACA
CGACAAAAAGAATGCATCTTTTGATGAACAAAGGCGTACGAAACACTCGTTGGTACGCTGTTTAAATCTGACGGAACCGC
GTACGCACTTTTGTTTCCTGAGATGTTAATTAAAGTTACCACTCCGCAAACCTTCCTTGCTTCAGTTTCACTCTCCGGGG
T-TGAATAAATAGCCATCTAACCTGGCCTATGAATTCACCACAGCCATATACACGCTCAACAAAAGCTCGCCAGTTAGCT
TAGCTAGCTAGACTTAATAGGCAGCTAGCAACACCGTAGCTAGCTAGCCTGACACAGGCACACGCACAATGAGGTCACCG
GCTGCCATCCTCTTCCTCCTCGCCGTCGTTGTCGCCGGCGCGGGCGCGGCGTCCGCGTTTGGATCCGAGAAGCCGCCGAC
CGTGGCCGTAGGCGTCGTCATGCCGGCGGACCCTCGCGGGCCGATGCTTGCGCGCTTCGCGGTGCTGGTGTACAGCCTGA
GCCGGAACGCCAAGCTGACGTACGCCGGCGTGTCTGGCGTCGACCAGCGCCCCGACAAGGGCGGTGTCAGGTACCAGATG
GTGGTCACCGCCGTCGACGCCGGCGGTGCCACGGCCAAATACCGGGCGGTCATCTGGGGGGTCCCCGAGACCTCGCGGTG
GACGCTTCTGCGGTTCAAGCGCATAAACTGATCCGTCCGGG---------------TGCGTGCACGTAGCAGGACGGGGG
ATGGTCATGCATGTGTGTGCACGAGCGCATACTAACAGTATATGCATCTTGCCACTATATATGAGCGTACTACTGTACAA
CTACATCAGGCAACAAGCAAGTGAATAAATGGAGTCCGTCTACGTTGCAGAAGAAGACTGATGATTTATAAGTGTGT---
--ATGTGTCAATTCAGGAATGTTGATGGTAAAGTTTTTGTGTAAGCCTTGAGTAGCTTGAGGATGCG------------T
GTGTATGTTTTGATC---------------------------------------------------ATCATCCAGAAGTA
CTCTTTTGTGTGTATCCATG---------------------------GGTGTGCATGAGTGTTGATCATTCATGTGTGTG
CATGGAAAAAAAATTATATGAAACCAGGTCTCACGGTTAGCAGGTGAGACCCGTCCTGATGGATGACACGTGACATTCAC
AAATCACAAAGCATCCCCCACCCCCCACTTAAAATCAGGGGGGAGAGAGATTAGATGCTTTGTGATTTGTGAATTCCACG
TGTCATTCATCAGGATGGGTCTCGCATGAGACCTGGTCTCATAGAATTCTTTTCCGTGTGCATGAGGGCATAAATCATTA
TAATATTATATGCATGCATCTTGCCACTAGTATAGGCATGTACCAGTGTTCAACTAGCAGTACATGCAATCAAGTGGATG
AACGGCTAGAGTCAGTTGTTGAT-CAAATAACCATCAAATCGGAGTAAAAAGATTTGAACTACAGTGGGTCCGGCTATTC
GTGATCGTATAAAGCTCTAACAAGGGACACATGGTAAATCTTTATCTGTTATGTAGGTTATCTATTGTTGTGTGCATTGG
TTTTGTTCGTGGTTTAGTCTTCATCAACCAATTGTTTATGATGGTGTGTATGTGATTGA----GCAGGTTGTCAAGGAGC
CTTTTGCTACACATGGATGGCGGCATAGTTCATGGATAACACACACCTCCTCGCCTTACGCATGGTTCCAGTCTGCTATG
ACTTTGTTGTTTTTGACA-TTTTATATTTTATCATGCATGTAAGCGTTTTTTCAAAAAAAAAAATGCATGTAAGCGTTTA
TGTTGATTGTGTGCATCATAGCCATTCATAGGTGT---GGATGTATGTTCATTATACTTAGTATTCCTTTGATGCTACAT
TATAAGTTAGTAAAACAGCTCTTTGC---
>chr4B_703
AAAAA---------------------------------------------------------------------------
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----------AATGCATCTTTTGATGAACAGAGGCGTACGAAACACTCGTTTGTACGCTGTTTAAATCTGACGGAACCGC
GTACGCACTTTTGTTTCCTGAGATGTTAATTAAAGTTACCACTCCGAAAACCTTCCTTGCTTCAGTTTCACACTCAAGGA
GCTGAATAAATAGCCATCTAACCTGGCCTATCAATTCACCA--ACC--ATACACGCTCAACAAAAGCCCGCCACTAAGCT
TAGCTAGCTAGCCTTACTACGCAGCTAGCAATACCTTATCTAGCTAGCCCA--ACAGGCACACGCACAATGAGGTCATCG
GCTGCCATCCTCTTGCTCCTCGCCGTCGTTGTCGCCGGCGCGGGCCCGGCGTCCGCGTTTGGATCCGAGAAGCCGCCGAC
CGTAGCTGTTGGCGTCGTCATGCCGGAGGATCCTCGCGGACCGATGCTCGCGCGCTTCGCGGTGCTGGTGTACAGCCTGA
GCCGGAATGCCAAGCTGACGTACGCCGGCGTCTCCGGCGTTGACCAGCGCCCCGACAAGGGCGGCATCAGGTACCAGATG
GTGATCACCGCCGTCGACGCCGGCGGCGCCACAGCCAAGTACCGGGCGGTCATCTGGGGAGTCCCTGAGACCTCGCGGTG
GACGCTTCTGCAGTTCAAGCGCGTAAACTGATCGGGCCGGGAGCGGTGCGTGTACATGCGTGCACGTAGCAGGACGGGGG
-TGGTCATGCATGCGTGTGCACGAGCGCATACTAACAGTATATGCATCTTGCCACTATATATGAGCGCACTACTGTACAA
CTACATCATGCAACAAGCAAGTGAATAAATGGCGTCGGTCTACGTTGCAAAAGAATACTGATGATTTATAAGTGTGTACT
CTATGTGTCTGTTCAGGAATGTTGATGGTAAAGAGTTTGTGTACGCCTTGTGTAGCTTGAGTATGATAGTGAGGATGTTT
GTGTATGTTTTGATC---------------------------------------------------ATCATCCAGAAGCA
TTCTTTTGTGTGCATCCTTG---------------------------TGTGTGCATGAGTGTTCATCATCCATGTGTGTG
CATGAGTGTTCATCATTCATGT----------------------------------------------------------
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-------------------------------------------------------GTGTGCATGAGCGCATAAAGCATTA
TAATATTA------------------------------------------------------------------------
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>chr4B_1822
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-------ATATGCATGCACCTTGCCAGTAGTATAGGCATGTTCCAGTGTTCAACTAGCA---CATGCAATCAAGTGAATG
AACGGTTAGAGTCCGTTGTTGATAAAAATAACTACCGAATCGTAGTAAAAAAATA--AACTATAGTGGA--CGGCGATCC
GCGATCACATAAATCTCTAAAAAGGGACACATGGTAAAACTTTACCTCCTATGTAGGTTATCTATCGTTGTATGTATTGG
TTTTGTTTGTGGTTTAGTCTTCACCAATCGATTGGTTATGATGGTGTGTACGTGATTGA----GCAGGTGGTCAAGGAGC
CTTTTGTTACACATGGATGGCAGCATAGTTCATGGATAGCACCCACCTCCTCCTTAAG-GCATGGTTCCAGTGTGCTATG
ACTTTGTTGTTTCTGGCATTTTTATATTTTATCATGCATGCAT------------------------------GCGTTTG
TGTTGATTGTATGCATCCTAACCATTCATATATATGTCGGATGTATGGTCACTATGCTTAGTATTCCTTTGATCCTATAT
TTTAAGTTAGTAAAACAATTCTTTGCTGA
>SNPs
-----------------------------------------------S----S-----------------S--------S
-------------------------------------S----------SS------------------S-SS-S------
---S-----------S---------------S-------------------------S----------------------
------------------S--------SSS-S------------------------------------------------
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-----S--------S---------S-SS----------------------------------------------------
---S---S---------------------S------------S-----------------------------S---S---
----------S------------S--------------------------------------------SS-------S--
---------SSSSSSSSSSSSSSS------S-----------SS-S--S------S--------SS-----S--------
S----S--S-S--------S----------------S-----------S---------S---------------------
---------SS-----------------------------------------S---------------------------
----------------------------------------------------------S---------------------
----------------------------------------------------------------------S---------
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-----------------------S---S-S--------S-------------S---S-----------------------
---------S-----------------S-----S---------------------------------------S------
----------------------------------------------------S-------S-------------------
-----------------S-S------------------------------S-----------------------------
-----------------------------------------S--------------SS----------S-----------
--------------------------------------------------------------S---S-------------
-------------------------------------------------------S------------------------
----------------------------S--------------------------------S---S--------------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------S--------
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------------------------------------------S-------------------------------------
S-----------SS--------------------------SS----------------------S------S--------
----------------------------------------------S--------S--------S---------------
------------------S----------------------------------------SSSS-----------------
---------------------------------S------------S-------S-------------------------
------------S-------------------------------------------------------------------
----S------------S------S-----------------------------------S-------------------
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>forward_130
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------------------------------ACTTCGTAAGGCGTGAGGTG------------------------------
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>reverse_1333
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----------------------------------------------------TCGCCTTTGGATCCGAGAAG--------
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>forward_1099
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---------------------------------------CCACTCCGCAAACCTTCCTT---------------------
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>reverse_2045
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--------------------------------------------GGGTGTGTGCATGAGTGTTG----------------
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