>input_sequence_82621
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------------------------------------------------------ATGAGGTCATCGGCTGCCATCCTCTT
GCTCCTCGCCGTCGTTGTCGCCGGCGCGGGCCCGGCGTCCGCGTTTGGATCCGAGAAGCCGCCGACCGTAGCTGTTGGCG
TCGTCATGCCGGAGGATCCTCGCGGACCGATGCTCGCGCGCTTCGCGGTGCTGGTGTACAGCCTGAGCCGGAATGCCAAG
CTGACGTACGCCGGCGTCTCCGGCGTTGACCAGCGCCCCGACAAGGGCGGCATCAGGTACCAGATGGTGATCACCGCCGT
CGACGCCGGCGGCGCCACAGCCAAGTACCGGGCGGTCATCTGGGGAGTCCCTGAGACCTCGCGGTGGACGCTTCTGCAGT
TCAAGCGCGTAAACTGA---------------------------------------------------------------
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>chr4B_1_TraesCS4B01G288900
TGTACTCACACCCCTTATCCCAACCGTTGGCTAGGTGTTGTCCCGCATCGAGATCCGAACAATGCTGTAGTGTGCTCAAG
TGATTTGTAGGGGACATGTCCAGTAATATGAGCCGTGTAAGGGTATGTCCAAGATGGACAGATTCCCTTTTCTGACACAG
CTGGACGTGCATGGAGCTTCTGAGATAAAAAAAAAACTTTTTCACAAAAATAAATCCAGAAAACCGGTTGCATGTGGCAG
CTCTCTCTTTGT-GTCTTTGACTCTTGCACTCATGTTTTGAATATTTTTTTACATGGTGCATACTGTCTCTCCTTTTTCT
GACACGACCGGACGTAGCCTTCTACACGCATATCGGCAGAAAACTGAGCGCTTAGATGTCAAAATCTTATTTCAAATATT
ACCACAATCACTTACGGGCTATG-GCATCCACAAAAAGCTCCATCTCCTAGAGGATC------GACCGATGGACATGCAT
CTCTTGGGTCATTGAGCAGTCCAGTCTCCATCCACGTGACTAAAGTAGCCTTGGTGCACGACCTGTCGGGAACATGTACA
TGCCCTCTGAGTACATTCCTAGGGCGTCTGATCAACCAACAAGTCCTGCAAAATACTCTGTGACGCGTCTGACCAGTGCA
CGAATCTCTGCGAGAATGAACCGATGAGATAAGGGGTGTGCACACACCTGAGAGTAGCCACACATTTCCGGAAAAAAATG
CATCTTTTGATGAACAGAGGCGTACGAAACACTCGTTTGTACGCTGTTTAAATCTGACGGAACCGCGTACGCACTTTTGT
TTCCTGAGATGTTAATTAAAGTTACCACTCCGAAAACCTTCCTTGCTTCAGTTTCACACTCAAGGAGCTGAATAAATAGC
CATCTAACCTGGCCTATCAATTCACCA--ACC--ATACACGCTCAACAAAAGCCCGCCACTAAGCTTAGCTAGCTAGCCT
TACTACGCAGCTAGCAATACCTTATCTAGCTAGCCCA--ACAGGCACACGCACAATGAGGTCATCGGCTGCCATCCTCTT
GCTCCTCGCCGTCGTTGTCGCCGGCGCGGGCCCGGCGTCCGCGTTTGGATCCGAGAAGCCGCCGACCGTAGCTGTTGGCG
TCGTCATGCCGGAGGATCCTCGCGGACCGATGCTCGCGCGCTTCGCGGTGCTGGTGTACAGCCTGAGCCGGAATGCCAAG
CTGACGTACGCCGGCGTCTCCGGCGTTGACCAGCGCCCCGACAAGGGCGGCATCAGGTACCAGATGGTGATCACCGCCGT
CGACGCCGGCGGCGCCACAGCCAAGTACCGGGCGGTCATCTGGGGAGTCCCTGAGACCTCGCGGTGGACGCTTCTGCAGT
TCAAGCGCGTAAACTGATCGGGCCGGGAGCGGTGCGTGTACATGCGTGCACGTAGCAGGACGGGGG-TGGTCATGCATGC
GTGTGCACGAGCGCATACTAACAGTATATGCATCTTGCCACTATATATGAGCGCACTACTGTACAACTACATCATGCAAC
AAGCAAGTGAATAAATGGCGTCGGTCTACGTTGCAAAAGAATACTGATGATTTATAAGTGTGTACTCTATGTGTCTGTTC
AGGAATGTTGATGGTAAAGAGTTTGTGTACGCCTTGTGTAGCTTGAGTATGATAGTGAGGATGTTTGTGTATGTTTTGAT
CATCATCCAGAAGCATTCTTTTGTGTGCATCCTTGTGTGTGCATGAGTGTTCATCATCCATGTGTGTGCATGAGTGTTCA
TCATTCATGTGTGTGCATGAGCGCATAAAGCATTATAATATTACTAGTAATACCCCGCGCGTTGCCGCGGGAATTTTTGG
CACTACATAAAAGGATGATTATGGAATAAAACTTAATAAACAGTGAAAATAATATAAATGTATGTTTATTTGAACCTTTG
ATGGCATGTAAAAAAATTAAAAGGATGATTATGGAATAAAACTTAATAAACAGTGAAAATAATATAAATGTATGTTTATT
TGAACCTTTGATGGCATGTTATGAAAAGTCAGAAAATTAGTATATTGTAGAGTATTTCCATATTTGCAAACTTAGTTATG
TGTCGCTTTTTTTCATCTCAAAAAATATGTGTTTCTTTTTATGCGGGGAAATTTAATTACATTGCCAACATGAAAATGCA
AGATATGGTTTGATGATATTTTCACTTAAAGTGTACGCAAGCCTGGTCCAAACCCAATATTTCACTTAAATCGATGTCCA
AGCAAGTCCCAACACAAAAGTCTGGAAGCCTGAAACCTAGCTCGAGGCCTTATAAAATCACTAACGCCAATGCTTTGTTG
AATTATCTGCTCTTCAAATTGTATTTAAAAACAAATGTCCTTCGAAAGCGAAAGTACA
>chr1B_1
TGTACTCACACCCCTTATCCCAACCGTTGGCTAGGTGTTGTCCTGCATCGAGATCCGAACAGTGCTCTAGTGTGCTCAAG
TGATTTGGAGGGGACATGTACAGTAATATGAGCCGTGTAAGGGCATGTCCATGAAGGACTGATTACCTTTTCTGACACAG
CTGGACGTGCATGGAGCTTCTGAGATAAAAAAAACTC--TTTCACAAAAAAAAATCCAGAAAACCGGTTGCATGTGGCTG
CTCTTTCTCTTGAGTCTTTGAGTTTTGCACTCAAGTTCTGAATATTTTTTTACATGTTGCATACTCTCTCTCCGCTTTCT
GACACGGCCGGACATAGCCTCCTACACGTATATCAGCAGAAAACTGAGCGCATAGGTGTCAAAAACTTATTTCAAATAAT
ACCACAGTCACTCACTGGTCCGACGCATCCACAAAAAGCTCCATCTCCTAGACGATCTACAGTGACTGATGGAAAGGCGT
CTCTTGGGTCATTGAGCTGTCCAGTCTCCATCCACGTGACTACAGTAGCCTTTGTGCAGGACCTGTCGGGAACATGTACA
TGCCCTCTGAG---------------------------------------------------------------------
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>chr4D_704
AAAAAAC-------------------------------------------------------------------------
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------------------------------------------------------------------------------TG
CATCTTTTGATGAACAAAGGCGTACGAAACACTCGTTGCTACGCTGTTTAAATCTGACGGAACCGCGTACGCACTTTTGT
TTCCTGAGATGTTAATTAAAGTTACCACTCCGCAAACCTTCC-TTCTTCAGTTTCACACTCAAGGAGCTGAATAAATAGC
CATCTAACCTGGCCTATCAATTCACCACAACC--ATACACGCTCAACAAAAGCTCGACACTAAGCTTAGCTAGCTAGCCT
TACTAGGCAGCTAGCAACACCGTAGCTAGCTAGCCCG--ACAGGCACACGCACAATGAGGTCACCGGCTGCCATCCTCTT
CCTCCTCGCAGTCCTCGTCGCCGGAGCGGGCGCGGCGTTCGCCTTTGGATCCGAGAAGCCGCCGACCGTAGCCGTGGGCG
TCGTCATGCCGGCCGACCCCCGCGGGCCGATGCTCGCGCGCTTCGCGGTGCTGGTGTACGGCCTGAGCCGGAACGCCAAG
CTGACGTACGCCGGCGTCTCCGGCGTTGACCAGCGCCCTGACAAGGCCGGCATCAGGTACCAGATGGTGGTCACCGCCGT
CGAGGACGGCGGCGCCACAGCCAAGTACCGGGCGGTGATCTGGGGAGTCCCCGAGACCTCGCGGTGGACGCTTCTGCAGT
TCAAGCGCGTAAACTGATCGGGCCGGGGGCGGTGCGTGTACACTCGTGCACGTAACAGGACGGGGG-TGGTCATGCATGC
GTGTGCACGAGCGCATACTAACAGTATATGCATCTTGCCACTATATATAAGCATACTACTGTACAACTACATCATGCAAC
AAGCAAGTGAATAAATGGCGTCGGTCTACGTTGCAGAAGAAAACTGATGATTTATAAGTGTGTA-----TGTGTCAATTC
AGGAATGTTGATGGCAAAGTTTTTGTGTAAGCCTTGAGTAGCTTGAGAATGTG------------TGTGTATGTTTG---
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>chr4A_704
AAAAAG--------------------------------------------------------------------------
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----------------------------------------------------------------------------AATG
CATCTTTTGATGAACAAAGGCGTACGAAACACTCGTTGGTACGCTGTTTAAATCTGACGGAACCGCGTACGCACTTTTGT
TTCCTGAGATGTTAATTAAAGTTACCACTCCGCAAACCTTCCTTGCTTCAGTTTCACTCTCCGGGGT-TGAATAAATAGC
CATCTAACCTGGCCTATGAATTCACCACAGCCATATACACGCTCAACAAAAGCTCGCCAGTTAGCTTAGCTAGCTAGACT
TAATAGGCAGCTAGCAACACCGTAGCTAGCTAGCCTGACACAGGCACACGCACAATGAGGTCACCGGCTGCCATCCTCTT
CCTCCTCGCCGTCGTTGTCGCCGGCGCGGGCGCGGCGTCCGCGTTTGGATCCGAGAAGCCGCCGACCGTGGCCGTAGGCG
TCGTCATGCCGGCGGACCCTCGCGGGCCGATGCTTGCGCGCTTCGCGGTGCTGGTGTACAGCCTGAGCCGGAACGCCAAG
CTGACGTACGCCGGCGTGTCTGGCGTCGACCAGCGCCCCGACAAGGGCGGTGTCAGGTACCAGATGGTGGTCACCGCCGT
CGACGCCGGCGGTGCCACGGCCAAATACCGGGCGGTCATCTGGGGGGTCCCCGAGACCTCGCGGTGGACGCTTCTGCGGT
TCAAGCGCATAAACTGATCCGTCCGGG---------------TGCGTGCACGTAGCAGGACGGGGGATGGTCATGCATGT
GTGTGCACGAGCGCATACTAACAGTATATGCATCTTGCCACTATATATGAGCGTACTACTGTACAACTACATCAGGCAAC
AAGCAAGTGAATAAATGGAGTCCGTCTACGTTGCAGAAGAAGACTGATGATTTATAAGTGTGTA-----TGTGTCAATTC
AGGAATGTTGATGGTAAAGTTTTTGTGTAAGCCTTGAGTAGCTTGAGGATGCG------------TGTGTATGTTTTGAT
CATCATCCAGAAGTACTCTTTTGTGTGT---------------------------ATCCATGGGTGTGCATGAGTGTTGA
TCATTCATGTGTGTGCATG-------------------------------------------------------------
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>SNPs
-------------------------------------------S-----------------S----S-------------
-------S-----------S-----------------------S-------S--S----S----S---------------
----------------------------------SS-SS-----------S---------------------------S-
----S---S-SS---------S-S---------S---S------------------S--------S-------SS-----
------S------S------S-------S-----S----------------S---S--------S-------------S-
------S-----S--S--SSSSS-----------------------------S-------------S------S-S--S-
-----------------S------------------------S---------S-----S---------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
----------------S--------------------S------------------------------------------
--------------------------------S-----------------------------------------------
-----------------------------------------------------S--------------------------
-----S-----------S---S--S-----------S--------------------------S----------------
S------------------------------S----------------------------------------S--S----
------------S---S--------S-----------------------------------------------S------
---------------------------------------------------------------------S----------
---------------------------------------------------S----------------------------
---------------------------S----------------------------------------------------
-----------------------------------------------------S--------------------------
-----------------------------------S-----S----------------------SSSSS------SS---
-------------------SS--------S------S----------S---SSSSSSSSSSSSSS---------------
-------------S-S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---------------S-
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_597
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-----------------CCTAGGGCGTCTGATCAACC-------------------------------------------
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>reverse_1804
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-------------------------------------------CTAGTAATACCCCGCGCGTT-----------------
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