>input_sequence_82613
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-ATGGCTCCCGCAGCAGCTGCGCACATCATGGTGGTCGCTGTGGTTGCGGCGATGCTCCTCGCGGCGGCGCACACCGCCG
ACGCCGCCATCAGCTGCGGCCAGGTGAACTCTGCATTGGGACCCTGCCTCACCTACGCGCGTGGCGGCGCTGGCCCGTCC
GCAGTATGCTGCAGCGGCGTCAAGAGACTCGCCGCTGCCACCCAGACCACTGTTGACAGGCGCGCCGTGTGCAACTGCCT
CAAGAT--------------------------------------------------------------------------
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------------------------GGCCGTCGGCCGCATGAGCGGGTTCAAGGCCGGCAACATCGCCAGCATCCCGTCCA
AGTGCGGCGTCAGCGTCCCCTATGCCGTCGGCGCCTCTGTCGACTGCTCCAGGGTCAGCTGA------------------
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>chr4A_1_TraesCS4A01G194300
AAGACTCTCCCCTAAAAAGGAATCATTTATCGAAACAGAGTAATGGGGAATCCCTTCCATCCTTGACAAATGATCCGCAA
CAAGGCTGTCTTCACCTTTTCTATCAACAATCTGCAAATAAAATTCTTGGAATAATGGGGTATCCCTTCCATCCTTAACA
AGTGATCCACAATAGTGTTTTTGTGAGTTCGTTTAGGGTTTGTGTCATGACTAGGAAGACAAA---GTGGCAGATCCCCG
AAGATGAAATAAGGCCCTCCTCGCCTGTTTCCTGTTTTGGTGATGTGTCTAGAATCGTCGGAGGGCGTGTGGAGGTGTGT
CTCTGGCGGATATCATGGTATTCAGTTGGTGCTGGTCTTCGATAGATCTGTTTGGATCCAGTCTTTGTTCGCATGCATAC
ATACTGGATCCTTTCGATCTATACTTCTCTTCATCTGCGACGGTTCTTGTTCTGGTGTGCTGCTCCTGTAAAGTCTTGAC
ACGATGACTTCTG-----TCTACTACAATAAGTTTGGCCCGACTCTGAAGAGAGAGGGTTGATGACAGTGGCGCGCCTTC
GATTCGCTTTAGTGCTTATAGTCGTCGTTAGATAAT--------------------------------------------
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--------------CTACTAATATGGGTGTAATTTTTGTTATTTC---TGTGTTCTTCGTACAAATCAAAGGAATCAAGC
TTTATAGCAGGTGGTGTAATGGTGTGCTCATCCCCACCAAAAGTTAGCACTTGCCTAATTCAAAGA--ATCATTAATCCA
CTCAACTAGGGTCCTCGTGTTAGCTAGGGTGCCGTTCAGTAAT--CACTCCATCACGAATAGAATGGTACGTAGATCCAT
CTGCCCCCAACGTCCAACAACCTCTGCAGCCTCGTCGAATTAATC-ATCCTGCCACCGGCGATTTACTTGACACCAGGTA
TGCTTCAGTGTGTTTC---CCTATCTCTTCTTCCTGGGAAACCTGGCCTA--TTTA------------------------
--------AGCCATTTGATCGCTACCACCGCTG-------CTTCCGTTACACTACTGT--AAGCTCG-TAAGAGAACAAA
TATGGCTCCCGCAGCAGCTGCGCACATCATGGTGGTCGCTGTGGTTGCGGCGATGCTCCTCGCGGCGGCGCACACCGCCG
ACGCCGCCATCAGCTGCGGCCAGGTGAACTCTGCATTGGGACCCTGCCTCACCTACGCGCGTGGCGGCGCTGGCCCGTCC
GCAGTATGCTGCAGCGGCGTCAAGAGACTCGCCGCTGCCACCCAGACCACTGTTGACAGGCGCGCCGTGTGCAACTGCCT
CAAGAT--------------------------------------------------------------------------
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------------------------GGCCGTCGGCCGCATGAGCGGGTTCAAGGCCGGCAACATCGCCAGCATCCCGTCCA
AGTGCGGCGTCAGCGTCCCCTATGCCGTCGGCGCCTCTGTCGACTGCTCCAGGGTCAGCTGATCTGGAGAATGCAGATCA
TCCGTGGCCGGCGTTTAGCTCGATCGGTCGACGCTGATGAGTTAAGGTTACACCTCTATAAA-TATACGTGTCTAGATC-
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---------------------------------------------------------------GAATAAAAGCTTGGGTC
TCCATGCATGATGGGTTGTACGAACGTGTGTGGTCAGGCCCTGCGCGTGGTGTGCATGCATGTACGTCGAGCCAGCTCTC
GACGGCCACGACTGAATCGATGTTTA-------TTTCCGTTTGTGCAAGAGTACCAGTGTCGGTGGATATATGCGTCAGA
GTTGTTAACTTTTATCTCTTGTGGAGTGCAAACTCTTGCATTAGGTACTGGCACAGGCTGAATCGTTCTCCGCTAAGGAC
AAGCACATTAGAGCATCTAC--TCAGCTAGGGCACACCAAATTCAACGCGTCAAACGGCGCGTCCGCGGGCAGTAACCGG
TTATACGTTATACTTTTTCCTATGCATCCGAATACCTCATACTTCATTCTTTAGATCTATACAAAGCATGCAAAAAAGAA
AGTCATCCTTACGTACGTACTACACAAATCACACTAGCTAAACTACGCTTCGTCGTCGAAGAGGTCCATGATCTTCGTGA
CGTGCGCCGGGTAGATGGGCCCATAGGAGGGCTCCTCTTCCTCTTCCTCCATATATATAGGCAAGCATCTCGACGACGTC
CCCTTCCTACTCCAGCTGGAGGATACGGTGGTTGGCCTCCGCCTCCGACTGGAGGGAATCGAGAATTGTGTGCTGCTCCG
CCTGCAGATCCGTGTCCACCGCGTCCTCCTCATCCTCCTCTTGCTCCACCTCCTGCTCCTCATCCTCCTCCGACTCTTCC
TCCGTAACCAACGCGTCTAGAGGTACCCCTGCGGCGATCTGGGCTTCGTGTCTTTCCCGGATCTGCTCAAGGAGCTGCAG
CCGACGCTTCGGCGTTAGATAAGGGTAGCTCCTAACCTGTCAACGTGGTCACGTGGCTACTTGAATGTGGTGGCAGACGG
CAAGCGTCCGGCAAGT
>chr4B_1
AAGACTCTCCGCCGGAAAGGAATCATTTATTGAAACAGAGTAATGGGGTATCCCTTCCATCCTTGACAAGTGATC-GCAA
CAGGGCTGTCTTCACCTTTTCTATCAATAATCTGCAAATAAAATTCTTGGAGTAATGGGGTATCCCTTCCATCCTTGACA
AGTGATCTGCAATAGTGTTTTTGTGAGTTCGTTTAGGTTTTGTGTCATGACCAGGAGGACAAAACAGTGGAAAATCCTCG
AAGATGGAATAAGGTCCTCCCCTCCTGTCTCCTGTTCTGGTGATGCGTCTAGCGTCGTCGGAGGGTATGTGGAGGTGTGT
CTCCTGCGGATATCGTGGGATTTAGTTGGTGTTGGTCTTCAATAGATCTGTTTGGATCCAGTCTTTGTTCGCATGCATAC
ATACTAGATCCTTTCGATCTATACTTCTCTTCATTTGTGACGGTTTTTATTCTGGTGTGATGGTCCTGTGAAGTCTTAGC
ACGATGACTTCCCAACTATCTACTACAATAAGTTTGGCCCGACTCTGAAGAGAGAGGGTTGATGACGGCGACACATCTTC
GTCTCGCTTCAGTGCTTGTAGTCGTCGTTAGATGGCCTACGAACATTGATGTTTTTTTAGAAAGGGAGGAGGACCCCCGG
CCTCTGCATCTGGACGATGCATGCAGCCACTTTATTAATTATTCACACAAGACCTTACAAAGTCATACAAAAGTAATACT
ACAGCCACCGTCTAGGCAACATCTATCGCTACTCCTATCCAGTTGATGAAGGGATGCTGATAGTCTGGGCCTAATACCAA
ACAGACCTCGCAGCCAAACCTAACATCTAAGACCCGAGGTCCCAACCAGGACGCCTGCCGGGTATGGGGCACCCACCAGT
CCGGTGCGCTCCTCAACCAGGACGCCTGCCGAGTATGAGGCCGCCGTAGCCACCTGCCACCAATCAATCTTTAGTGTTGT
ACTGCTGCATGTACCTTGCCCAGTCTAGCTATCGACGACGCCACCACGACGCCAGATAACGCCACCATCATGCGCTCGTC
CATCATCACACGCCCATCGGCGAGACCCCGCTGCTCCATGCCGCTTAGACCCGTCGTTGTCGACATGTCAGATACCATGT
CGCTCCTCCTCTTGTCCCCTCCAACCAACACTTGCTTCAAAACGATGCCCCTAGGAGGGAGAACGACATCGAAACGTCGC
CATCGTCCAATTCGGTAGACCCAGATCTAGGGTTTCCTCCGGAACCTTTCGATCAGGTTGATGTGACCTGCAACGACGAT
GTCTCGAGAAGGGAACGACGCCCGAGACGCCACCATCGTCCGCCATGACCGCAGTCAGGCACGATTTTCACCGGAGGCCA
CGTCGTCCCGATCTCGCGGTTGGCTGGAACCGAGCGGAGTCTCTCCACGAAGACGAACGCCGCCGTCGGTAAACCGGCGG
AGATCCGACATCTCCTCACTAGTCCCTCGACGCGCCGCCGGTCGGCGGAAGGCCATCCCACGGCGGATCCAATCGGGGCG
TTGGATCCACAGTCGCTGCCGCCACCATCTCCGCGCAGATCAGGTACCCCGTCGGATGGGGCGCTGCCACTACCGGCATC
CATTCAGGGCCGCCGCTCCGCCGACTTATGGTGCTTCGGCCACCGCCGCATGGCAAGGGATCGCCGCCCCAGCCACCGCC
TTCGGATCTCACGAGAAGGGCCGCCCCTGCCGCCTCAGACGAGATCACGCCGCATCCACCCGCCCAGGTGCCTTCAGCGC
CGGGCCCGCCGCCACCACGGCCCTCGCCGGCGGCAGCGGCGACAGAGGGAGGCGCGAGAGGAGGCCTGCGGCGCTAGGGT
TCGGGGGGCCCTAGCGTCGCCTAGGGGGAGGCGACGCGAGGGGGAGGGCGACCCAGATCGGTTCGCAGTGGCAAACGTGG
ACTTTACTTCTCACCTACGGATATTGATGTATTTTTTGTTATTTATTATGTGTTCTTTGTAAAAATCAAAGGAATTAACC
TTAATAGCAGGTGGTGTAATGGTGTGCTCATCCCCACCAAAAGTTAGCACTTGCCTAATTCAAAGA--ATCATTAATCCA
CTCAACTAGGGTCCTCGTGTTAGCTAGGGTGCCGTTCAGTAAT--CACTCCATCACGAATGGAATGGTA----GATCCAT
CTGCCCCCAACGTCCAACAACCTCTGCAGCCTCGTCGAATTGATC-ATCCTGCCACCGGCGATTTGCTTGACA---GGTA
TACTTCAGTGTGTTTC---CCTATCTCTTCTTCGTGGGAAACCTGGCCTATTTTTA------------------------
--------AGCCATTTGATCGCTACTACCGCTG-------CTT-CGTTACACTACTGTAAGCTCGTAATAAGAGAACAAA
TATGGGTCACGCAGCAGCTGCCAACATCGTGGTGGTCGCTGTGGTTGCGGCGATGCTCCTCGCGGCGGCGCACACCGCGG
ACGCCGCCATCAGCTGCGGCCAGGTGAACTCTGCCTTGGGACCCTGCCTCACCTACGCGCGCGGCGGCGCTGGCCCGTCC
GCAGTCTGCTGCAGCGGCGTCAAGAGACTCGCCGCTGCCACCCAGACAACTGCCGACAGGCGCGCCGCGTGCAACTGCCT
CAAGATCTATGAAGCACCGATACGGCCAGAACTGGTGTATCGGCGTACTGCACGCCGCCGATACTCCGATACGCAGGATA
CGGCTTCGATACGCGTATCCCAGGAGTATCATGATTTTAGATTTAAAAAGAAAGAAAATAAACTCGATACGCACTGTGGA
GACGGCAGGATACGGGCGGGACACGGGAAGGACGTCGCCAGCCTCAAGCCCAATAAGAAGCCCATGAGCCTAATCGGGCG
GGGGACTGCAGGAGCGCGCCGCCGCCGCCGCCTGGAATCGCCTTACTTACCACGCCGCCGCCTCGGCTGACTCTACTGGA
GTCTTCTCCGTCGTCGTCGGAAGAACTGCTTGATGTGTGCTTGGCTGCTGCTTCCTGTGTGCTTGGCTGACTACTTGTGT
GCTTGGCTGATTCGCTGGCCCCGAGTGATGTGTGCTTGCTGCTTGGTATTGCTTGCTTGCTGATGTGTGATGCTACTGTA
CTGCCTACTGCTAGGGAAGCTGCATCGTATCTACTCCACTCAATACTGTGCTGCCCGTTTAGAAACAAACCCACTCTAGC
TCAGGGCATATTTGTATAGCACAACAATGCAATTTTGTATCCCTGTGTGTAGCTAAACTAGTGGTTTTAGAAATTTAGCA
TGAAGATGTTTGATCTCATCTCCCACATTCTATTATGTTTGTTTTATTACATGCGATTTTATTAATTATTTATATATACT
CACCGTATCGCTATATTGATGTTTCTAAAAATTGCCGTATCTCGTATCGCCGTATCCGTATCGCGGTATCGATGTCACCG
TATCGGTGCTTCATAGCTCAAGATGGCCACCGGCCGCATGAGCGGGTTCAAGGCCGGCAACATCGCCAGCATCCCGTCCA
AGTGCGGCGTCAGCGTCCCCTACGCCGTCGGCGCCTCTGTCGACTGCTCCAGGGTGAGCTGATCTGGAGAATGCAGATCA
CCCGTGACCGGCATTTAGCTCGATCGGTCGACGCTGATGAGTTAAGGTTACACCTCTATA-AATATACATGTCTATATCG
AATAAAAGCTGAGGACGTGGGCATAGCCCAGTGGTTGGGGGCGCATGATTGTAAACCTAACGACCAGAGTTCGATCCACA
TCGGGGACGAATTTCATAAACCGTGGGTGCTAGTGCCCTTGGAGTTTCATTTTTTTTTATATCGAATAAAAGCTTGGGTC
TCCATGCATGATGGGTTGTACGAC---GTGTCGTCAGGCCCTGCGCGTGGTGTGCATGCATGTACGTCGAGCCAGCTCTC
GACGGCCACGACTGAATCTATGTTTCC-------TTCCGTGTGTGCAAGAGTGACAGTGTCGGTGGATATATGTGTCAGA
GTTGTTAACTTT-ATCTCTTGTGGAGTGCAAACTCTTGCATTAGGTACTGGCACAGGCTAAATCGTTCTCCACTAAGGAC
A------TTAAAGCATCTACAATCAGCCAGGG-ACACCAAATTC------------------------------------
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>chr4D_634
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--------------------------------------------------------------AAATCAAAGGAATCAACT
TTAATAGCAGGTGGTGTAATGGGGTGCTCTTCCCCACCAAAGGTTAGCACTTGTCTAATTCAAAGACCATCATTAATCCA
CTCAACTAGG-TCCTCGTGTTAGCTAGGCTGCCGCTTAGTAATACCACTCCATT-----------------------CAT
CTGCCCGCAACGTCCAACAACCTCTGCAACCTCGTCAAATTGATATATCCTGCGAGCGGCAATTTACTTGACACCAGGTA
TGCTTCAGTGTATTCCAATCCTATCTCTTCTTTCCCCGAAACCTGGCCTATTTAAGCTCCTACAGTCCCCGGCATAGGCT
ACGTACCTAGCCATTTGATCGCTACCACCGCTGTCCGCTGCTTCCATTACACTACTGTAAAAGCTCG-TAAGAGAAGAAA
TATGGCTCGCGCAGCAGCTGCTAACATCGTGGTGGTCGCTGTGGTTGCGGCGATGCTCCTCGCGGCGGCGCACACCGCCG
ACGCCGCCATCAGCTGCGGCCAGGTGAACTCTGCCTTGGGACCCTGCCTCACCTACGCGCGTGGCGGCGCTGGCCCGTCC
GCAGTCTGCTGCAGCGGCGTCAAGAGACTCGCCGCTGCCACCCAGACCACTGTTGACAGGCGCGCCGCGTGCAACTGCCT
CAAGAT--------------------------------------------------------------------------
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------------------------GGCCATCGGCCGCATGAGCGGGTTCAAGGCTGGCAACATCGCCAGCATCCCGTCCA
AGTGCGGCGTCAGCGTCCCATACGCCGTCGGCGCCTCTGTCGACTGCTCCAGGGTCAGCTGATCTGGAGAATGCAGATCA
CCCGTGGCCGGCGTTTAGCTCGATCGGTCGACGCCGATGAGTTAAGGTTACACCTCTATAAAATATACGTGTCTATACCG
AATAAAT-------------------------------------------------------------------------
-----------------------------------------------------------------------GCTTGGGTC
TCCATGCATGATGGGTTGTACGAACGTGTGGTGTCAGGCCCTGCGCGGGGTGTGCATGCATGTACGTCGAGCCAGCTCTC
GACGGCCACGACTGAATCGATGTTTACTCTTTATTTCCGTGTGTGCAAGAGTGACAGTGTCGGTGGATATATGTGTCAGA
GTTGTTAACTTTTATCTCTCGTGGAGTGCAAACTCTTGCATTAGGGACTGGCACAGGCTAAATCGTTCTCCACTAAG-AC
A------TCAGAGCATCTACAGTCAGCCAGGGCACACCAAAT--------------------------------------
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>SNPs
----------S-SSS---------------S-----------------S--------------------S-----S----
--S------------------------S-----------------------S------------------------S---
-------SS----------------------------S-------------S----S-------------S-S----S--
------S-------S-----S-S-----S-------S--------S------SS-----------SS-------------
---SS---------S---S---S--------S--------S---------------------------------------
-----S----------------------------S--S-------S--S----------S--S------S-------SS-
-----------SS-----------------------------------------------------S-S-S-S-SS----
-SS------S-------S---------------SSS--------------------------------------------
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------------------SS----S-S----S------------S------------S---S----------------S-
--S-----------------------------------------------------------------------------
------------------------------------------------------------S--------SSSS-------
-----------------------------------------S--------------------------------------
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--------S------------SS-----S---------------------------------------------------
----------------------------------S---------------------------------------------
-----S-------------------------------------------------------------S------------
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----------------------------S---------------------------------------------------
----------------------S---------------------------------------------------------
S--------------------------------------------------------------------------S----
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-------------------------------S------------------------------------------------
----------------------------------------S-----------SS-------------------S------
-----------------------------------------------------------S-----------S--------
-SSSSSS--------------------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_361
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---------------------TCAGTTGGTGCTGGTCTTCG---------------------------------------
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>reverse_4685
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--------------------------------------------GTGGTCACGTGGCTACTTGA----------------
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