>input_sequence_82608
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-------ATGGTTCTAAGGGATGACAAGGGCAATATCATATTTTCATCTTGCCGGGAAGCTCTTGAACCAAAATTGTGTG
CGTCCATGGGAGGGCTCTCTTTTGTTTTACAAAATAGTGATTTTTCTATTATTATTGAGATGGATTCCATAGTTACTTTC
AAGTTGATTCAAGCCCGGGATGTGGCTAGAACAGTCTATGCTCCGCTCATCAAGGAAATTAGATACCTTTTTTGTCTTCA
GGATACTTGTATTACTCATGTTAACGGTGTTCAGAATAATGTTAAGAGTGGTAGTTTAGCTAGGTTTGCTAGAACTGAGG
GCAGAACTATGACTTGGTTAGGGTCTGGCCGGACGTTGCTTTATCTCTAG------------------------------
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>chr3D_1_TraesCS3D01G498200
TACCGTGAAAAATTGAGTCATGCACCCAACTGTGCACACGCCACGGTCGCCTCTGGACCAAGCTCAAGAAGACAAAAGAG
TTGCGTGTCACTACTCCTCGCAGTGGTGGTATGCAGATCTTCGTGAAGAAGAAGAACAACAAGCAATCTTACAAAGACAA
AGCTTGTGCATGGTGGTGGTATGTATAGTGATCTTTGTCTAGAAGATCTTCACACTCGTCTAGCAAGCTCACTCAAGACC
AGCAAGAATCCTATCAAGACATCTGGCAA---CGATCGCCGGCGAAGACCCGTGAGTGACCTCACCCGACAACAACTGTC
CTTAGCTGGCGTGCAATCAGCCAACCTTCGACAGCAAGCTACCGCCTGACATATGCGTGGTGCAGTCGTTCTGTGCTCGT
AGGACCCTCGTGCCACGCGGTCGGTGGGCAGGCGCGCTAGGCGATGGACAAGC--------------------TGCAAGG
GGTGACTCACTCACCCACGCCGGCGCATGGTGCACACCTG--TGCAAAGACGTTTCACGCCTCGAGCAGGTGTCACCATA
GTCGGTGCTGACAAGACAGGAATTCATTCCCGGAAGATAGAAGATGATGACACATTGCCACGCATTTAATGCACCCGCCT
ACCTGGTCGCTCTAAGACCGC-TTCCTTAGCCTCGAAGCCATCTGTGGTACCC-TTGG-ATATAAAAGGAGGTCCAGGCT
GGAGGAAAAAGGGGG--AGG--ACACGATGAGCAGAAGAAGAGAAAGTAG-----------AA-CA-GATGGGACACTTG
TTAGAATACCAGTAGGAGCACACTACTCTTCCTGTTCTCAGGAAGGACTTGTAGCTCTAATCCACACATC--AAAACACA
TAAAAAGCAGGAGTAGGGTAAATCATCGTGTCCATTTCTCATACTTCAGTAGTGTAGGTTTGTGCCTTCGTGCTGCATCC
CCGAAGTAACAAAAGGACGTCGACCGTCCATGGTGTCACACGCGTGTTCTGCACACGCTGCCCGACAATGGTACCGCTGG
AGCAGGTATGGTTCTAAGGGATGACAAGGGCAATATCATATTTTCATCTTGCCGGGAAGCTCTTGAACCAAAATTGTGTG
CGTCCATGGGAGGGCTCTCTTTTGTTTTACAAAATAGTGATTTTTCTATTATTATTGAGATGGATTCCATAGTTACTTTC
AAGTTGATTCAAGCCCGGGATGTGGCTAGAACAGTCTATGCTCCGCTCATCAAGGAAATTAGATACCTTTTTTGTCTTCA
GGATACTTGTATTACTCATGTTAACGGTGTTCAGAATAATGTTAAGAGTGGTAGTTTAGCTAGGTTTGCTAGAACTGAGG
GCAGAACTATGACTTGGTTAGGGTCTGGCCGGACGTTGCTTTATCTCTAGCTTTTAATGATTATAAGGACTTGGTGATTG
AGTAATACAAGTTTTTTATCCGCAAAAAAAAACTGATTTTATGATGAAATTTTGCATGCACAAAAACATTTCTTAAAGTA
TGCCGCCCCAAAAAAAAAATTTGATGTCGATCACATGCTGCTTCATGTGCTGCACTGCACGTATTGGTGCGCTCTGCCAT
GGCCGAACGCGATGCATGCAGCAGGCCGTAGCTGGCTAGATAGAGAGCACTATCTGGCTCAGTCTGAGTCCCTGCTTCCC
GCAAACCCACACTTTACCCTGTCCCCTCCAAGAAATCACGACGGTGCCGACCAGCAAATGGGGTGTGGAGCTGAGCGCTG
AGTGTCATCGTCGAGTTTCATCCCAACAACCAACATACTTCATGGACTACAGTCTTCGTGCACTCTCATCACCAAGCACC
GACCGACGCTGCTTACCCAGAAACATGCATGGATTGATGCCAGTGCCTAGCTGTAAGGTGCATGCCACCCACGTGGTGTG
CAGGCTCTAATGGTCGCCGGTGTATATCAAGAACTGTCCAAGGAAGTACTAGCTCAGTCTGAATTTATTAGTTCTCATCG
TATTTTAGATTAAAATTTGACCACATATTCAACTAGCAAAATGTTAATTTATGTCATAAAAAATTATATTATTGAATTTA
TATTTGAATGTAGTTGCCAATGGTTTTTTTACACATAACTTAAATTTTTATTGTTAAAATTATGGTCAAACTATGACTCA
AAATACGAGGAGGGCTAGTAAACCAGGGTAGTAATAGATAAGTCGCTCCAGCGCTGATGGATCCGTGCGACTATTAATCA
TCAACATGACGTTTGTAGATCTTCATAACATCGATAGTGCCTGTACGCGCTTTTCTACACGTGAGCGGGGGCGTAAATGA
CATGTGGAGGGTTCATTGGTACACTTCATATTTTGTGACGAATTTGGCTGTAAATTTAACAAACAAAATATAAGTTCTCT
GTATTAAGAA
>chr3D_1
TACCGTGACAAATTGCGTCACACACCCAACTATGCACATGCCACGGTCGCCCCTGGACCAAGCTCAACAAGACAGAAGAG
TTGTGTGCCACTACTCCCGTCAGTGGTGGTATGAAGATCTTCGTGAAGAAGAAGAACAACAAGCAATCGTACCAA-ACGA
AGCTTGGGCTCGGTGGTGGCATGCA----GATATTTGCCTACAAGATCTCCATACCCATCCAGTAAGCCCACTCAAGACC
AGCAAGAATCCGATCAAGACATCCGGCAATGACGATCGCCGGCCAAGACCCGTGAATGATATCACCCGACAACGGCT-TC
CTTAGCTGGCGTGCACTCAGCCAGCCTTCAACATCAAGCTATCTCCTCACCTACGCGTGGCACAACCGTTCTGCGCTCGC
AGGACCCTTACACCACCCGGC--------------------CGGTGGGCAGGCGCGCCAGATGATGGACAAAACGCAAGG
TGTAAATCACTCACCCACGCGGCCGCATGGTGCAC--GCCTCTGCCGAGACGTATCATGCCTCGAGCAGGTGTCGCCAAG
GTCGGTGCTAACAAGACTGGAGTTCGTTCCCGGAGAATAGAAGACGATGACACCTCCCTAAGCATTTAATGTACTCACCT
ACCTGGTTGGACCTAGATCAC-TTCCTTAGCCTCGAAGCCAT-TGTGGTACCCCATGGAATATAAAAGGAGGGCCAGACC
AGAGGAGAG--GAAAAAGAGGAACACGATGAGCAGAAGAAGATCAAGTAG-----------AA-CATGGTTGGACACTTG
TTAGAACATCAGTAGGAGCACACTACACTTCCCATTCCCGGGAAGGACTTGTAGCTCTAATACACCTATG--AAAACACA
CAAAAGGCAGGAGTAGGGTA------------------------------------------------------------
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>chrUn_6
-----TGACAAAATGCGTCAAGCACCCAACCGTCCGCC--CCACGGTCGCCCCTGGATCAAGCTCAAGGAGGCAGAAGAG
ATGCATACCAATATCCTCTTCGGTGGTGGTATGCAGAACTTCGTCAAGAAGAACATCAACAATCATATACATCAA-GCAA
AGCTTGTGCTTGGTGGTGGCATGAG----GATCTTTGTCCAAAGGTTCTGCATGAA----CATCAAACGCTCTCAAGATC
AGTAAGTACCAGATCAAGACGCA---CAACAACGATCGCCGACCAAGACCCGGGAAAGATCCCACCCGACAACAGCTGTC
CATAGCTAGCGCGCACTCAGCCAGACATCGACAACAAGCTACTGCCTCACTTACGCGTGGCGCAGTGGTTCTACGCTCGC
AGCGCTCTCGCGCCACGGGAC--------------------CAGCGGGCAGTCATGCCGGACGATGGTGAAGATGCAAGG
GGTGACTCACTCACCCACGCCGCCGCATGGTGCACACGCCTATGCCGAGACATGTCGCGCCTCAAGCATGTGTCACCAAG
GTCGTTGTTGACAAGACATGGGTCCGTTCCCAGAAGACAGAATACGATGACACATCATCACTCATTTAATGAATCCACCT
ACCTGGTCGGATCGAGACCAC-TTTCTTAGCCACAAAGCCATCTGTGGCACCCCTTGG-ATATAAAAGGAGGGCCGGGCC
ACATGAAAG--GAAG--GAGGAAGGAAATGAAAAGAACGAGAGCAAGTAG-----------AACAA-CGTTGGACACTTG
TTAGATCGTCAGTAGGAGCACACTGACTTGTCCATT-CCTGAAAAGATTTGTAGCTCTAATCCAGCCGT--AAACACACA
CAAAAAGCAGGAGTAAGGT-------------------------------------------------------------
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>chr6B_19
------------------CACGCACCCACG-GTGCGCC--TCACGGTCGCCAC-GGACCAAGTTCAAGAAGAGAGAAGAG
CTGCGTGCCATCATCCTCCCTGGTGGTGGTATGCAGATCTTCGTGAAGAAGAATATCAACAAGAAGATCTATCAA-GCAA
GCTTTGGGCTCGGTGGTGGCATGCA----AATCTTTGTACAACAGGGATTGCGTCCTCCTCCGACGTCCACA--AAGTTC
AACAACTACCCAACCAAGACAGCCGGCAACAACGACTAGG---CAAGACCCGAAAC-GACCTCACCCGACAACGGCTGTC
CACATCTGGCGCGCACTCAGCCAGCCTTTGATAGCAAGCTATTGCCTCACCTACACGCGGCGCAGTGGTTCTGCGCTCGC
AGGGCTCTCGCACCACGCGGC--------------------CGGTGGACAAGT--------------------CGCAAGG
GGTGACTCGCTCACCCACGCTGCTGCATGGTGCACACCTG--TTC----------CGCGCCTCGGGCAGGCGGCACCTAA
GTCGGTTGTGACAAGACAGGGGTCAGTTCCCGGATGACAGAAGGCGATGACACCTCATCGCGCATTTAATGCTCCCACCT
ACTTGGTCGGATCAGTAGCCTTTTCCTTAGCCTCGAAGCCATCTGTGGTACCCCTTGAAGTATAAAAGGAGGATCGGGCC
AGAGAAGGAAAGGGG--GGTTGGACCCAGG------------GAAAATAG-----------CA-AA-GGTTGGACACTTG
GTAGAACACCAGTAGGGATAAACTGTCCTCCCCATTCATGAGAAGGTTTTGTACCTCTAATCCACCCATCAAACACAC--
CAAAAAGCAGGAGTAGGGTA------------------------------------------------------------
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>chr3D_355
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-------------------------------------GCTACGGCCTCACCTACGCGTGGCGCAACGGTTCTGCGCTCGC
AGGGCTCTCGCGCCACGTGGC--------------------CAGTGGGTAGGCGCGCCAGGTGGTGGACAAGACGCGAGG
GGTGACTCACTCACCCACGCCGCCGCATGGTGCACACT--TATGCTGAGACGTGCCATGCCTCCAGCAGGTGTCACCTAG
ATTGGTTTTGACAAGACAAGGGTCCGTTCCCGGAAGACAGAAGGCTATGACACCTCATAGCGCACTTAATGTATCCACCT
ACCTGGTTGGATCAAGGTCACTTTCCTTAGCCTCGAAGCCATCTGTGGTACCCCTCGAAGTATAAAAGGAGGGCTAGGCC
AAGAGGAGG--GGAG--GGGTCGAGAGAGC------------CAAAAAGAGGCAAATAGCTAA-GA-GATTGTACACTTA
GTAGAATGCCAGTAAGGATACACTATCCTCCCCGTT-CCCGGGAAGGTTTGTAGCTCTAATCCACCCATCAAAACACACA
CAAAAAGCAGGAGTAAGGTA------------------------------------------------------------
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>SNPs
--------S------S----S-----------------S------------S----------------------S-----
-------S---------S-S------------------------------------------------S---S--S----
---------S---------S---S-SSSS------------S----------S--S-S--S-------S-----------
-----------S-----------S-------------------S-----------S------------------S-----
---------------S-------S-----------------------S--S--S------S------------S-----S
----------S---------SSSSSSSSSSSSSSSSSSSSS--S------------------------------------
----------------------S----------------------SS------S------------------------S-
---------------------S---S------------------S----------SS-------------------S---
---------SS-S------S----------------------------------------------------S------S
S---------S------S----------------------------------------------------S---------
--------------------------S-----S----S-S-------------------------S--------------
S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_954
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------------------------------------------------------TAGGTTTGTGCCTTCGTGCT------
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>reverse_1915
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--------------------------------------------------------------------------GGTGTG
CAGGCTCTAATGGT------------------------------------------------------------------
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